Array 1 1103-208 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDFO01000076.1 Companilactobacillus halodurans strain TMW 1.1920 seq76, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 1102 37 97.3 29 G.................................... TTTTGAGACTATTTATATATATTTATACC 1036 37 100.0 29 ..................................... CCTGTTTTGACCCACTTGTCATCTTCTTT 970 37 100.0 29 ..................................... ACTTCATGAGTTAGGAATTCAATACAAAC 904 37 100.0 29 ..................................... TCGGTATAGTTATAAGTGTTCCAAGGAGC 838 37 100.0 29 ..................................... TCCCTTAGTGCCACAAGGGATACAGTGTA 772 37 100.0 29 ..................................... TAAATTCAGGCGTTAACAATATCTTAATT 706 37 100.0 29 ..................................... GGGTGAAAGCTAATCCTAATATTTGCTTG 640 37 100.0 29 ..................................... CTATCAGTAATCTTCATGACAGGGTCAGC 574 37 100.0 29 ..................................... CAATGTTTACGTTAAATTCTTCATGAAAC 508 37 100.0 29 ..................................... TTGTAATTGTTCCCGAGGGAGCGACACAG 442 37 100.0 29 ..................................... AAGGTGATTGAGTGAATAGTATATTAACG 376 37 100.0 29 ..................................... TAAATTCAGGCGTTAACAATATCTTAATT 310 37 100.0 29 ..................................... TCAAAGTAATGTAGGCTGGCTCTTTATTG 244 37 86.5 0 T...............G...........T..AT.... | ========== ====== ====== ====== ===================================== ============================= ================== 14 37 98.8 29 AGTTTTTGTACCCTTAAAGATTTAGAAACGATAAAAC # Left flank : TAGAATTTCAGTTGAAGAGTTTAAGCAAAACTTCTTGGGTAATCTTATATGATATAAGTGGTTTTGTGGCACCTGAAGATGAAGCCAACTTTATTCTGAGTCTTAAAAAATTAACTCTGAATTATGATTTAAAAATCATTTATTTAGGTAACAATCTTGAGAATGTTCCATTAACGTCAGGTGATTTAGAAAAAATAATTATTAGTGCTGATGAATTTCACCAGTTACTACCAAGTGACGAATTAAAAAAGTCAGTCAGTATGCATTATCCTAATAAATATGTGGTAACGGAAATGAACTTCGTAAATTCAATAAGACGAATTTCTCAATATATTGGCAATGATGAAATCAATTTTATTCCAAGTAAAGATTTGGTATTATTGAAGGTAGTAAATGAGATTTTGGGTTACGAGACGTCGCTTGATCCAGAAAAATATTTGCTATCTGATGCAGAGACCAAATTTTTGGAAAATTAATAATAATTCAATTTTTTGATTTGA # Right flank : CTAAAACCCAGATCTAAATGATCTGGGTTTTTCCGTGCACAAACCATATAAACAAATCAATAAATAAAAACAAAAAAACTGTTACGAAAATTACAAGAACAAGTTAGCCACTTGTCCAAAAATAAATACGAAATATATCAGTACCAGAAAAGTACATTTCTAAACTCCACAGAAACTAGTGAATAGTTCCCGTGGAGTTTTGTAGTTT # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTTTTTGTACCCTTAAAGATTTAGAAACGATAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 1 39125-38492 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDFO01000022.1 Companilactobacillus halodurans strain TMW 1.1920 seq22, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 39124 37 100.0 29 ..................................... AGAACTCTTGCAAGCAAGAAGAGGAAGAC 39058 37 100.0 29 ..................................... ACTTTTTGCTTTTTTTTTGCTTTCTTTTG 38992 37 100.0 29 ..................................... TTAGCATTGGCAGAATACTAAGACCACGC 38926 37 97.3 29 ....................................A ACTCGAATGATGATACATAATTATCGTGA 38860 37 100.0 29 ..................................... TTAACTCCAAAAGACAAACTCAAAATTAA 38794 37 100.0 29 ..................................... GAACAAAATGCAGAAAACAAGTTAAGTTA 38728 37 100.0 29 ..................................... AACAAGAAAATTCTGGAACGTTAAAACAT 38662 37 97.3 29 ....................................C TTAGATTTGAAGAGATAAGCGGATTAACT 38596 37 100.0 29 ..................................... TGAGTACAATTTACCTGCTTGATAGCGCT 38530 37 94.6 0 ...................C...............T. | TC [38496] ========== ====== ====== ====== ===================================== ============================= ================== 10 37 98.9 29 GTTTTAGAACTATGTCATTTTATTTACTTATGAACCT # Left flank : CACAATGGCTATTTAACATTAATGGTTATTTTAATTTAACTATGTCATTTTATTTACTTGTGAACGAATACAGTGTATCTCATTTCCATATTTATATCAATATTTTAGAAGAAATTCTATGAACTAGTGAACTATTTAATCCAATCGTCTTATAAAGCTAATACCTTGATTATTTAAATTTTTAAATGGATCTTATTATGCAACCATACTATTTGCTATTAAACCTTGACGATATATTAGATATAGTAAATAATAAAAAATATAGATATTATCAAAAGATAAGATGGATATGATAAATTAACGGTGGAATTGTGCTTTATTTCGATTTCATAGATAATAATCTTTTCTTTTCAACATTACAGATGTTTACTGATAAATGATAAATCTAAATAGAACATAAAATCACGTGGAGGCTTTTGATTTAAGACTTATATCTTTAAAAATTATTTCTAATTATGATAGTGACAAGCCAATTATTAGAATTTGGTTAGAAAACAACG # Right flank : TATGATAACAATTTTATCAAATTTAAGTTACAGCCCTCTTATCCCACCTATTAGAATCTTGCTTATTCTATTTTTCCTTTAATTTTAATAGAGTATTTTTTAGTAAAAATACTTAACATAAATATTTTATAGCATTTAATAAGTAACAATAAGAGAGAGCCTGCATTGAAATATATCAAAATGGATTCAGTAATCAAAAAAAGATTACTGAGTCCATTTTTTAATTTTTATCCAATTTGACTAGTTCCATCTGCGTAATTTAAAGTAACGCCTGATTGAACATTGAAAATATAGACGTTAAAGCGAACCGAATTATCACCGATTGATTGAGCTTCCATTTGCACGCCGCGAGGCAACAATTCATTTCCTCTAAAGACTGGCGTGACACGATATCTGATGTAATGGGAACTACTTTTCTTCAAATAATAAGCAATATCCATTTCATGAGCTAACATTTCCGGACTATTCAATGAACGAGTTCCTGTCATCAAGTTTTTAGG # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAACTATGTCATTTTATTTACTTATGAACCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.68%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //