Array 1 612422-609815 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ969506.1 Streptococcus sp. DD13 scaffold00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 612421 36 100.0 30 .................................... TGCAAGAAAGGCTACTTGATAGATGAATTC 612355 36 100.0 29 .................................... TTTAGCTACAGCTGTACCCCCATTAGTTC 612290 36 100.0 30 .................................... ATGATTTAGAAAACGGTCACTTGATTGTTA 612224 36 100.0 30 .................................... ATCAACGTTTCAGGTAATTTGTCACTCCTT 612158 36 97.2 30 ............C....................... TTTGAGTGATGAACACGCTAATGAGTTTGT 612092 36 100.0 30 .................................... CTAAGGCCTCGGACGGAACGCCTCAAGGAA 612026 36 100.0 30 .................................... CTAAATCAAAATTTATCAACCTTGAATATT 611960 36 100.0 30 .................................... CGACGCAACTGGATACGAAGGAGCCTACCT 611894 36 100.0 30 .................................... ATCAAAGATTTCAAATCAATCCCAACGTAC 611828 36 100.0 30 .................................... TCGATACATTCCGCTCTCTGTCAGACGATT 611762 36 100.0 30 .................................... TGAAAGTTTCTCGAAACTTATTAAGCAATT 611696 36 100.0 30 .................................... CAGGTTCTAAAAATATCTTTGATGAATACT 611630 36 100.0 30 .................................... TGAAACGATTTTTTAATAAAAAAATGCTTC 611564 36 100.0 29 .................................... CTTGCCTTGCTTCTCTGAATTGGCGGTTA 611499 36 100.0 30 .................................... CCTTGAAGTCTCACAGCCATTTCTTAATGA 611433 36 100.0 30 .................................... CTATTGTGGCTGGTTTCAATCGTTTATCTT 611367 36 100.0 30 .................................... CTTTGAGCTCCTTCGAAGTTGGCCGTATCT 611301 36 100.0 30 .................................... AATGGGCTCAAGTTGGTTTACGGGCGATAG 611235 36 100.0 30 .................................... CTAGCCCCTCTTGCTCTGACAAGTAATCTA 611169 36 100.0 30 .................................... TTGTACCAGCTGGGATAGTTGGTTCAAGCT 611103 36 100.0 30 .................................... TCAAGGTAAAATTGTTGTTGAAGGAACATC 611037 36 100.0 30 .................................... GAATCCATCGACTATCCGGTCTATGGCCTA 610971 36 100.0 30 .................................... TTAATGAATAAAGCTATTCCAGCTAATTCT 610905 36 100.0 30 .................................... ACAAGGACGTTACAGAGCTACGATTTACCA 610839 36 100.0 30 .................................... TCCGTTACAAGGGTTCGTTCGTTGCCGATT 610773 36 100.0 30 .................................... TATTAAAATAGTATTCGTAAGCTAAAGAGT 610707 36 100.0 30 .................................... TTCTCAAAATCTTTGTGAAGTCGTCTAGCT 610641 36 100.0 30 .................................... CGTTAATGGATGGAGCAGGGATTCCGAAAT 610575 36 100.0 29 .................................... CAAGGCGTGGATATATGATGCCGACCCTA 610510 36 100.0 30 .................................... CGAAAAGCAACTTGCCGACACACTGGCCCA 610444 36 100.0 30 .................................... TACTGTACGCGGAATCAGCCGAATAATGGG 610378 36 100.0 30 .................................... ATCTTGGCTCTTGGGGTAGCCTTTACCATA 610312 36 100.0 30 .................................... CGAGATATGCTATACTACTAGTGAGCCTTG 610246 36 100.0 30 .................................... AAGCTTTGACCGAAATTGAAGAAATCATGA 610180 36 100.0 30 .................................... AAAAAAACGGTCTGAAAACTTATTTGACTA 610114 36 100.0 30 .................................... GACGGATTCGGTTTCGATACGTAAAACAAC 610048 36 100.0 30 .................................... ATAACAGATGTCAACGCAGTGATGGACATA 609982 36 100.0 30 .................................... ATTTATCCCGATTCGGAGACGCTTGGGTGT 609916 36 100.0 30 .................................... GACCTGCAAGCAGAAATGGTCGTCGAACTT 609850 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 40 36 99.9 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : TGGATGATTATTTATCTTATAAGGAATTTGTTGAGTGTTGTGAACAATTAGAGCGATTAACCAATCATTGTAACATGTTATACACTATTTCATTTCCTTCAAATGAAGGATATCTTCATGTCACGAAAGAAGTACTAGAGGAGATTAATATTGTTTCAGATTACGTTGATCATTTTTATTCATTAGAATTTATGTATGAACGTTTTACTAATCAATATCCAGTAAATCAAATGCCTAGTAAACCAGAATTTTTATCATCTTTAAGGAAGATTGGGCCTTATTTATTTAGTTCTGACATTCTTCATATGAGCTTATCAATTGAGGATCAAGTAGCATTGAGAATATTAAATAATTTATACCAGTATGAAATGAAAATAAAATTCCGTATTGAACCAGTCAACCCAATGTTATTGAAGTATTTAGAAGAATAGTATTGACGAGTTAAGTCTAAGACCTTATAATGGTTTTGAGCTACAAAAACCAAAATTGACGAATTTGAG # Right flank : CTAGTATCAATAGCAATATCTCTCTTGCCGTTTTTGTACTCTCAAGATGGCCAAAAAGTCCGTGTTTTCCAGTTAAGACATTTTCGTGGCCTATTATTAAGTTTGTTTTCCCACAGCTGAATGGTTTGATCATCAACCAATGATAGATCACTTCCTTTTGGAAAATATTCTCCTAGTAGTCCATTGGTATTATCAGTGCTTCCTCGTTGCCATGGTGAGTGAGGATCTGAGAAATAAACTTCAATGTTCAATTGGTCACTCAATTTCTGATGATAGGGGAACTCTGCCTATGACTACTATGAGCAGTATAAAGTCAATAAGAAACTCTGTGGTTGGAATAAAACAAGGCTTACGCAATCAGAAAAAGAATTTATCCAAATTCATTTGGAACAAAATTGGAGCCTTGATGTTATTAAAGGGGACCTATCCAGATAAGATTTCTTGCTCCATGAGAACACTCTATCGTTTAACTGATATTGGTGTTTTCGATAAAATGGACT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.5 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 826977-826284 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ969506.1 Streptococcus sp. DD13 scaffold00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 826976 32 100.0 33 ................................ TAGTTATTTAACCTCACATTCAACCTTGAAGTT 826911 32 100.0 35 ................................ TGATTATATTATATCACGGTATGCCGTGAGTGTCA 826844 32 100.0 35 ................................ CAAGTTGATTTACAATCTGGTTATCATGCTCCAAT 826777 32 100.0 34 ................................ GTTTTACTTAGGATTGGAACAGGGATCTCCGCTG 826711 32 100.0 34 ................................ TACCGTCTTAGACGTTTTCAAAACATATACAGTG 826645 32 100.0 33 ................................ ATTTTTAAAGAATTTAGGGTCAATTATTGTTCC 826580 32 100.0 35 ................................ CTTGAGGGGTCCCGTCCGAGGCCTTGGAAGCTCCG 826513 32 100.0 34 ................................ GGAACAATCCCCAAGGAATATATCCCTGGTGAAA 826447 32 100.0 35 ................................ CATCTGGATTCCGTCCTACAGGGTCCAAACTCGGA 826380 32 100.0 33 ................................ AAGGTATTTAAGACGGGTAAAAATAGAAATGTT 826315 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 11 32 100.0 34 GTCGCACCCTTCACGGGTGCGTGGATTGAAAT # Left flank : GCTAAAGCGATTCGCGGGGAATTGGAATCCTATCCTCCATTTTTAATATAGGAGTTGCTATATGATGGTATTAGTAACGTATGATGTGAATACGGAAACTGTAAAAGGTAGGAAAAGACTGCGTCAGGTCGCAAAAGTTTGTGTGGATTATGGACAGCGTGTTCAAAACTCCGTTTTTGAATGTTCAGTCACTCCTGCCGAATTTGTTGAAATAAAAAGTGAACTCTTGTCAATTATTGATTCAGAATCTGACAGTATTCGTTTTTACTTACTTGGTAAAAATTGGCAGAATCGGGTTGAGACGCTTGGTCGAGATGACAGCTATGATCCTGATGTTGGAGTTTTACTTTTGTGAAAATTAAGTGCGAATCTAGGTTAAACATCAAACCTTGGGAGATTCGCGCGAAAAAATGTTGTTATAGTGATGAAAATCTATGTTTTATTACGAGATGTGGGGAATAAAACTTTGAATTTTGTCACAAACGGTGCAATATCGCGCC # Right flank : AGTTTTTGTTAAAAATGGAAAATAGAGTTTGGAGAAAGACTAGGATACTAGCTAAAAATAAAATCACACCGCTTTCGCTTCTATATCAGAAGCAAGGCTTTTTTTCGCTCTTTGCCAACTATAGTGGTTAGAAAAAGTTAACATCTGGAGATGACCAAGTTGGTTTTCTCCTTTTTGATGTTGAGAGCGATGAGAATTCTAGTGTTAAAGTTGTCAAAGTTGCGGAAACCAAAGGTATTTACTTGATGAATTTGATGAGGTTCTTGGTAGCTTCCAATAGGACTTATTTTTTCTGGTTGCTAACTAGAATGGATTAGAAGTGGATAACTACGCTAGATCAGTCATCAAAACAACCATTATGCGTGCTTACCGTGAACTAGCTAAACTGGAAAAGCACAGGGCGGAACAAAAAGAAATGCGTGAAAAATTTATTTCATCCGTCAAAAGTGGTATAATTAAGACAGAAATAAATAGCGAGCATTTTGAAAGACACATCAGAG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTTCACGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.50,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //