Array 1 12538-11287 **** Predicted by CRISPRDetect 2.4 *** >NZ_SIWA01000003.1 Salmonella enterica subsp. enterica serovar Ouakam strain AC3 contig00003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 12537 29 100.0 32 ............................. TCTGCCCGGTGTTTCCCCAGCGGATGCACAAC 12476 29 100.0 32 ............................. CAAGTTATCACCTGAATGAGTTATATAGCGTT 12415 29 100.0 32 ............................. CGGCCCTGCGGATCAATCCCCTGTTTATCAAA 12354 29 100.0 32 ............................. AAACTGCTGGAAATTGTCGCCTATTGGGAAAT 12293 29 100.0 32 ............................. CAGATCGACCGACTTGAGGTTGAAGTGGTTGG 12232 29 100.0 32 ............................. AGCATGGCTTTAAACTCATCAATGCCAGCGTC 12171 29 100.0 32 ............................. GTGTAGAATGTGAAGAATTAGTGATGTACGAA 12110 29 100.0 33 ............................. CGTAGCCCGGCAATACTGAACGCCTGGCACGGC 12048 29 100.0 32 ............................. GCGCAGATTGGAACTTTGACCAGCGACCAGAT 11987 29 100.0 32 ............................. CTTCTCCAGATTGGCCTCAGTAAAAAAATGAT 11926 29 100.0 32 ............................. GGCTAACCCATGACCACTATTACCAGAGAACA 11865 29 100.0 32 ............................. GGGATCCGCTGCGCGTGGCGTCCTGGTACACA 11804 29 100.0 32 ............................. CGTAGCCCGGCAATACTGAACGCCTGGCACGG 11743 29 100.0 32 ............................. ATTGACGATTTTTCGTTAATAACGTCGTTATC 11682 29 100.0 32 ............................. GTCAGTTGCCCGAACCGCTTTCCGGGACTGTA 11621 29 100.0 32 ............................. TCCCAGGACAACGAGTACCACGTCGCCAACAA 11560 29 100.0 32 ............................. TCTACGAATTAACAGGCTGGACAATCACGACA 11499 29 100.0 32 ............................. CCCGCGTTTAAGTCGATCCTCGAAGACGACGA 11438 29 100.0 32 ............................. CAGGTCACTAAAATTTGTAGGGTTATCCACAG 11377 29 100.0 32 ............................. ACAACAAAAACGCCGGGCATAACCAGGCGAAA 11316 29 100.0 0 ............................. | A [11289] ========== ====== ====== ====== ============================= ================================= ================== 21 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCGATACCAGAACCTGAATCCCTGGGGGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGTCGCCTTGCCATCTGGTTACTTGAGGTTCGTGCCGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCATCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCTTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 31143-28796 **** Predicted by CRISPRDetect 2.4 *** >NZ_SIWA01000003.1 Salmonella enterica subsp. enterica serovar Ouakam strain AC3 contig00003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 31142 29 100.0 32 ............................. GAGGGGGGCGATCCGGGGTCGGGTAAAATCTG 31081 29 100.0 32 ............................. TCGGCATCATTCCAGTGATTGCGCGTCGCTAT 31020 29 100.0 32 ............................. GATCGTGATTACGCTAAATATTTAATGAGAGG 30959 29 96.6 32 ............................C GACCCTGTCCAGACTCGACCACTCCCGAATCC 30898 29 100.0 32 ............................. CTGCAGGCTGCAGCGGAGGAGACATTCCATTT 30837 29 100.0 32 ............................. CGCTGCATTGAAATTATGCAGCCCGGCATACG 30776 29 100.0 32 ............................. GCGTATGAAAACGGCTACGGCGGGCGCAAACA 30715 29 100.0 32 ............................. GTTGCCCACCAAATCAATGACAATACTGACTT 30654 29 100.0 32 ............................. GGGGCTTCTCCGCCATCGTAGCGGATTTCAGA 30593 29 100.0 32 ............................. ATAATTACTCACGCATTAGCTGGAGAACGGTG 30532 29 100.0 32 ............................. TGGCGATCCCTATCGGCGAGGAACTGAAACGA 30471 29 100.0 32 ............................. GATGATGTTACCGGTGCTGATGTGCTGGATAC 30410 29 100.0 32 ............................. GCGCATAGCGATGCGAAATCAACGAAAATATA 30349 29 100.0 33 ............................. GTTACTTATAATTTCTTTCATAGACCCGGCACC 30287 29 100.0 32 ............................. GGTGTGATATGTGTGAAAACAAACATGTACTC 30226 29 100.0 32 ............................. CCGTGATAATTTTCGCGATATCTGTCCACTGC 30165 29 100.0 32 ............................. CCGCTACGTCAATCGCACCGGAGCAGTTACCG 30104 29 100.0 32 ............................. GGGAGAATAGCCCGTGCGGTATTGGGGGAAAG 30043 29 100.0 32 ............................. GTGACCAGTTCCAGTTGCGCCGCGATTTCGTT 29982 29 100.0 32 ............................. ACGCTGGCTGAAAACGGTTTTTCGGTCCGCCT 29921 29 100.0 32 ............................. ATTAAAACGAGAGATGAAAAATTTCATATTTA 29860 29 100.0 32 ............................. CCTGGCCCCCTTCCTCCGCGGTTAATTAATGC 29799 29 100.0 32 ............................. GTCAGCAAATTAGTCTTCTCTTCAACTGGAAT 29738 29 100.0 32 ............................. CGTTTTGAACACTCTACCACATGCTCTAAACG 29677 29 100.0 32 ............................. ACACCGGACAGATTGAACAGGATTGTGACGTC 29616 29 100.0 32 ............................. GGTTAAATCCGAGGTGACGCATCCTGAGGTAA 29555 29 100.0 32 ............................. GACGATGTTACCGGTGCTGATGTGCTGGATAC 29494 29 100.0 32 ............................. AGCCTGCTCCCGCCGCCTGATTTTGTGGAAAC 29433 29 100.0 32 ............................. ACGATTCAGGACGTGCTGATTTCTGGGTTGGT 29372 29 100.0 32 ............................. CACGTTTCCAGCGCGCGCAGTACGTAGGCGCT 29311 29 100.0 32 ............................. CCGGTAGTTCTGTCTGTGCTGCCAGCGGAGAC 29250 29 100.0 32 ............................. TTACGAATGAGAACCCATTTAGAGGTCGAATC 29189 29 100.0 32 ............................. GAGGTAAGCGCCGATCAGGAGAAATTAAATAA 29128 29 100.0 32 ............................. TCTGTGTTGCTGCAAAAACGTAGGTGCCAGGG 29067 29 100.0 32 ............................. TATTTTTGCGGGATCAGTGTCGGCTCGAGCAC 29006 29 100.0 32 ............................. GCGGCAGTATGACGTACCAGCTTATCTACGTT 28945 29 100.0 32 ............................. GTATCGAAACGGCGCTTGCCGCGTACCAGATT 28884 29 96.6 32 ............T................ GCTCACAGAGTTACATCCTCGATTACGGTCTA 28823 28 86.2 0 ...........AT...........G-... | ========== ====== ====== ====== ============================= ================================= ================== 39 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGAATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCATTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //