Array 1 54-449 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZFW01000020.1 Salmonella enterica subsp. enterica serovar Virchow strain 82-1040 NODE_20_length_108162_cov_2.50099, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 54 29 96.6 32 .............T............... TCGGCAGCTACTTCAGTGTTAGGCGGCATCCA 115 29 96.6 32 .............T............... CCACGGCGCAGGAAATCTCCTTTGTAACAGGG 176 29 96.6 32 .............T............... GTCTTATAAATTGGGCTGATAGTGCCGCTGAT 237 29 100.0 32 ............................. GTGATCGAGTATTGCTCGTTGTCGGCGTGGGC 298 29 100.0 32 ............................. AGTAATCAACTCAATGCGCTCACAACGCAATG 359 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 420 29 96.6 0 A............................ | A [446] ========== ====== ====== ====== ============================= ================================ ================== 7 29 98.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGCGCTAGCGGGGATAAACCGCGTGACTACTGCAACTTAAATCACGACGAAATG # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 94619-95622 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZFW01000018.1 Salmonella enterica subsp. enterica serovar Virchow strain 82-1040 NODE_18_length_113124_cov_2.47918, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 94619 29 100.0 32 ............................. AGCATGTTGGCCGCAACAGCGATTTGCTCTAC 94680 29 100.0 32 ............................. ATCTCAAGAGAAAGAGAAAAGGCTCTAAGGCA 94741 29 100.0 32 ............................. GGAGAAAATAAAACGCCGCTTATCGCGTTCGC 94802 29 100.0 32 ............................. CGATCTCCTGACGCTCCGCGACCAGTTCAAGC 94863 29 100.0 32 ............................. ATAATTCCTGTAAATGACCAATTCAGAGATAT 94924 29 100.0 32 ............................. AGAGCTGATCGCCACGGCGTTTAAAACTGCGA 94985 29 100.0 32 ............................. TGATTGCCACACTCTGGACATTCAGCTTGATA 95046 29 100.0 32 ............................. GCCTACGATTTAACAGGCTGGACAATTACGAC 95107 29 100.0 32 ............................. TAACCAAAGGTTACTTTATTATCTCTCGCATA 95168 29 100.0 32 ............................. ATAATTGGTAGCACCGGTACGGGGAAATCAAC 95229 29 100.0 32 ............................. CGAGATTGGCCAACGGCTCGATTACGACTTTA 95290 29 100.0 32 ............................. GTGGTAATGGTGCCCGGTCCGGCCGGGTCGCA 95351 29 100.0 32 ............................. CCTGAGGAGATATTCACCTTCCTGCATTTCAT 95412 29 100.0 32 ............................. CGGGAGTACGGCAGCGCTGGCGGGCGTGATCG 95473 29 96.6 32 ............T................ ATTGGTGAGGGGATTATTGAGCGGCGGTCAAC 95534 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 95595 28 93.1 0 .......................-.G... | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCTGGCCAGGATTAAGCTTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 111880-113067 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZFW01000018.1 Salmonella enterica subsp. enterica serovar Virchow strain 82-1040 NODE_18_length_113124_cov_2.47918, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 111880 29 100.0 32 ............................. TAACTTTTCACATCTCCCCTCATCACGCGCAA 111941 29 100.0 32 ............................. CCATCTCACCGCTCAGCTATCTACGGCGAAAT 112002 29 100.0 32 ............................. ACGATTTGCGTAGCACGCTGCGCACATTAATC 112063 29 100.0 32 ............................. CGCTGGGAAATATCCACGAGGTCTCGCGGCTG 112124 29 100.0 32 ............................. ACTGGCAGCACATAACCGGTTCGGACGCAGCC 112185 29 100.0 32 ............................. AGATTGAGCGCCGCACTAACCAGCGCATGATC 112246 29 100.0 32 ............................. GTTGGCAGCATGATCGCTAAATCTAAAATGCC 112307 29 100.0 32 ............................. TAACCTGATTGCCCTGTGATTCCGCTTTCTGA 112368 29 100.0 32 ............................. TTAGCCATCCCCATACCAAAGTTAAAGTCGTA 112429 29 100.0 32 ............................. CCTGGCAAATTATTTCCTGGATACTCGATATC 112490 29 100.0 32 ............................. GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 112551 29 100.0 32 ............................. GAGAGGCCGACTCAGCAACCAAAAAAGGGAAG 112612 29 100.0 32 ............................. AACGCGCAGCGCAGCAAAAAGCCGAGCTGGAG 112673 29 96.6 32 .............T............... CCATTCACGCCATACGCCGCCGTCACATAGCG 112734 29 96.6 32 .............T............... AGCGCGATCGTTCCGTCGTTTCGTGCGACGAA 112795 29 96.6 32 .............T............... TCCCCGAGCTTAGTTAGGTTTCGCTGAACGTG 112856 29 96.6 32 .............T............... TTGGCAGCGTTAACAATCCAACCCCTGAGAAC 112917 29 100.0 32 ............................. GCTTATCTGGAAAACCAATACGGATACGTAGG 112978 29 96.6 32 .............T............... CGTGACTACTGCAACTTAAATCACGACGAAAT 113039 29 96.6 0 .............T............... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGCAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATACATAGTTTTAGT # Right flank : CGTGACTACTGCAACTTAAATCACGACGAAATGTGTTCCCCGCGCTAGCGGGGATAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //