Array 1 284252-284104 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZID01000001.1 Xanthomonas albilineans strain HVO005 Xal-HVO005-G1-Mol001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 284251 28 82.1 32 CC.AG.G..................... TTTGACCGCGAACTCATGCCCGTCTTCCCGCT 284191 28 100.0 32 ............................ AATGCGCTGGAGCAGCGGCTGAGAGCAGTCGA 284131 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================ ================== 3 28 92.8 32 GTTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : CGGCGTGCCATTCACCGGCTTCCTCTACGCAGGGCTGATGATCGACACCAGTGGCGCGCCGAAGGTGATCGAATTCAACGTGCGCTTCGGCGACCCGGAAACGCAACCGGTGATGCTGCGCCTGCAATCGGACCTGGTCGATCTGGTCGAGGCAGCGCTGGATGGGCGTCTGCATGCGACCCAAGCGCAGTGGGACCCGCGCCCATCGCTGGGGGTGGTGCTGGCCGCGGCACCGTATCCGGACACGCCCGTCACCGGCGAGCCGATCACCGGCCTGGAGGCGGTGCCCGCCGATGCCAAAGTGTTCCATGCTGGCACCGCGCTGGATGCGCAGGGGCGCGTGGTCAGCGCCGGCGGCCGCGTGCTGTGCGTCGCCGCGCTGGGCGATAGCGTGGCCGATGCGCAGCGCCGCGCCTATGCCGGCGTGGCCCGGATCCACTGGGCCAGCGCTTTCCACCGCCACGACATCGGCTGGCGCGCCATCGCGCGCGAACGCGGCG # Right flank : ATCAGGCGCTGGATCGCCACGCCAATGCCTACCATTCACTGCCGCACCCGGTGACGGTGATCGCGTCGCGCCAACCACGGGTGCGCTATCTTGTTGCGGTGCACACAGCCTCGCTCGAATCCCACCTCAGCCGCCTCTGGGCACATGAAAAGGCCAGCTACGGCCTGCGCGTGTTCATCGCGCTGGCCGCGGCGATGGGTCTGTGCTGGCATCGCCAGCAGTTGGATGCGCTGCCGGCGATTTTCCTCGGCACCATCGCCAGCGCCATCGCCGAAACCGACGACAACTGGCTGGGGCGGATCAAGTCGGTGCTGCTGTCGCTACTGTGCTTCGCCGCGGCCGCCGCCGGCGTGGTGGTGCTATTCCCGTATCCGCTGGCGTTCGCTGCCGGTCTGGCGCTGTCCACCTTCGCCCTGACCCTACTCGGCGCGCTCGGCGAGCGCTATGCGTCCATCGCCCAGGGCACGGTGGCGCTGGCGATTTACGCGATGATCGGCATC # Questionable array : NO Score: 3.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.64, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: F [36.7-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 377050-376902 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZID01000001.1 Xanthomonas albilineans strain HVO005 Xal-HVO005-G1-Mol001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 377049 28 89.3 32 AT....................A..... AAGACCTTAAATCCTTCGGTTGTCTCTTTAAT 376989 28 100.0 32 ............................ TTGTAGAGAACGTGCAGGATCACACCGACCAG 376929 28 85.7 0 .T......................AGC. | ========== ====== ====== ====== ============================ ================================ ================== 3 28 91.7 32 GCTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : TTGGTGGTTGCATGAACGCTCCAATCACGTCAAAAACCAAGTGGTTTTTGCACATTTTTTGCTTATTTCTTGAACAGGCCATCAATGCCACGCAAAGCCCCCACGCCCTGCCGCCACCCTGGTTGCAGGAAGCTGGTTTCGGATGGTTCTGGCTACTGCGCCGACCATCAACGTGACAAGGTGGGCTGGCACAAAGACCGGCGTAATGCACATCAACGTGGCTACGGCGCGAAGTGGCAGAAACTGCGCGCCTTCGTCATGCAACGCGATCAAGGACTATGCCAGCCATGCAAACAGTCAGGACGCTTGACGCCAGCCGTGGCGGTGGATCACATCGTCCCAAAGTCGCAGGGTGGCACCGATCATCCAAACAACTGCCAGGCGATCTGCCATCGCTGTCACGTACTCAAGACGGCCCAGGAATCGCATCAGGGACGCGAAGGTGTTTGATACAAGACAATTTGGGCAGATGCACAATGACAACGATCATGGCATGCTCG # Right flank : ATGCTCGGGGCATCCATCGGACTCGATGCTGGGTAGGGGGGGGCAAATCCTTGCGATGCAATCGCAAAAGACCGCTCGCCCCATCAATTTTTCTCGCGTGCAAAATGAAACAGGGGGGGGTCCCCCCTGCAAGGAATCAATATGGCCGGACGCAAGCGTCTTCCCACCACCGTCAAGCAGATCAAAGGCACGCTGCAAAAGTGCCGCACCAATCTGGGCGAACCCAAGCCACAAGGTGATCTGACAGAGCCACCCGACTATATGAGCGAGGGTGCGAAGTCAGCCTGGCGCTACGCGCTGGAATGCGCGCCACCGCATCTGCTCAAGCGTCTGGACATGTCGGTGCTGGAAGTGTGGGCCTGCGCCGCTGATCTGTATCGCAAGGCACAGACCGGCATCAACAAGAGCGGATTGCTATTGAAGGCACCCAACACCGGCGTACCGATGCAGTCACCGTATCTGTCCATCGCCAACAAGCAGGCGCAGATCATGACCAAGGC # Questionable array : NO Score: 3.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.59, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 2684339-2684548 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZID01000001.1 Xanthomonas albilineans strain HVO005 Xal-HVO005-G1-Mol001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2684339 28 100.0 33 ............................ ATGCAATGGTGGTCATCAAGCCCATTGAGGACG 2684400 28 100.0 32 ............................ ACGTCAAGATCGGTGACCGTTTCTATGCCCCA 2684460 28 100.0 32 ............................ CTTGTGCTCAGCCGGGTTTGTGTGCAAACCGT 2684520 28 96.4 0 .........................C.. | A [2684543] ========== ====== ====== ====== ============================ ================================= ================== 4 28 99.1 33 GTTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : ATGCCAGCCATGCAAACAGTCAGGACGCTTGACGCCGGCCGTGGCGGTGGACCACATCGTCCCAAAGTCGCAGGGTGGCACCTATCATCCAAACAACTGCCAGGCGATCTGCCATCGCTGTCACGTACTCAAAACGGCGCAGGAATCGCGTCAGGGACGCGAAGGTGCCTGATGAAAGACAATCTGGACAGATGCATAATCACAACGGTCATGGAATGCTCGATTCACTGCCGTTTAGGCCGCTCAGAGAACTGTCTGCACTCGCATGTAGCCATGACGCTATGATCTGGGAGCCAATTTTGGCAATAGGAAGAGGGGTTCTACATGAAAGCTATTTTGTTAGCGGCAGCACTGATGGCTGCCATCGCCCCAGCGTTTGCGGATGTTCACGTGCGCGGCTATCACCGTTCGAACGGCACATATGTAAAGTCGCACTATAGAAGCTCCCCCAGCCATAACCACACCAGCCACTCTCACCGGAGTCGATAATCCTGAGGATT # Right flank : ATGCTCGGGGCATCCATCGGACTCGATGCTGGGTAGGGGGGTCAAATCCTTGCGATGCAATCGCAAAAGACCGCTCGCCCCATCAATTTTTCGCGCGTGCAAAATGAAAAACTTTTTTTTAAACAGATCCGTGTCAGAGCTAAGCGTTGCAAGGGACTACAAGGCGAACTTGGTGCAGATCGGACAGATCGATGTGACGCCATGGACTGCGGCAGCTCACGCGGGCATGACCCCAGCCAAACCTGTACAACTGGAACCCTATGCGCGGCCGTAAACCTCTGCCTGTGGCAATCAAGAAGATCAAAGGTACGCTGCAAAAATGCCGAACCAACCCGTATGAGCCCCGTCCCGAGGGTCAGTTGGGTGAACCCCCGGAGTACATGTCTGACATTGCCAAGGAGGCATGGATCTATGCGGTAGAGAACGCACCGCTGGGTTTGTTTTCTTCCCTTGATGCCACGGTACTGGAACGTTGGGCCAATTGCGCAGGTCTGTACCGC # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 3244417-3244974 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZID01000001.1 Xanthomonas albilineans strain HVO005 Xal-HVO005-G1-Mol001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 3244417 31 100.0 36 ............................... AGCCAAGTGGAACGTTGCAATTGCCCATTGTGCCCA 3244484 31 100.0 34 ............................... CCATCTCCTTTTCCGCTTCCCGAATCGCCAGATC 3244549 31 100.0 36 ............................... GCACCATTGCCGAAAGCAATGATCGGCGCGAAGTCG 3244616 31 100.0 35 ............................... TTCGCATCCGTGATGTCCTTGGGGTTGGGCTGTGG 3244682 31 100.0 36 ............................... CCCCGTCCAGGTGACAGGGTGACATCGGTGATGGGG 3244749 31 100.0 34 ............................... TTTGGCCCATTGCCCGGCCATTTTCACCATCGGG 3244814 31 100.0 34 ............................... ATCGTTAGTCAGGCTGAGGTCGCGGTAGATAAGC 3244879 31 100.0 34 ............................... CTTGTCATTTCGCACGCTGGTGGTGGCTAGGCTA 3244944 31 90.3 0 ............A......C..T........ | ========== ====== ====== ====== =============================== ==================================== ================== 9 31 98.9 35 GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Left flank : GCACTTGCGCGGCGACCTCGATGGCTACCCCTCCTTTTTCTGGAAATAAAATGGCAGTCGTCACATGATGGTCTTGGTCAGCTACGATGTCAGCACTAGCTCACCGGGAGGCGACAAGCGCCTGCGCAAGGTAGCCAAAGCCTGTCGCGACCTGGGTCAACGCGTGCAGTTCTCGGTCTTCGAGATCGAAGTGGACCCGGCGCAATGGACCGCACTACGACAACGCCTGTGCGACCTGATAGACCCGGACATCGACAGCCTGAGGTTCTACCACCTCGGTGCAAAGTGGGAAGCCCGCGTCGAACACGTCGGCGCCAAACCCAGCCTTGACCTCAAAGGCCCACTGATCTTTTGACGCGAACCCCAAGCGACCGGGAATTCACCCGCAGGTTCGCAAAANCCCCCCCCCGGACACAAGAGCATGCAATCGCCCGGTCGAGATGCGATTCGCGAAAACAGGTTTTTTCCTCAAGCACACGCCAGGCTTTATCCTGACGGGG # Right flank : CGAACACCTTGGATTACTCCACCGTCACCGACTTAGCCAAATTGCGCGGCTTGTCCACATCGGTGCCGCGCGCCAGCGCAGTGTGATAGGCAAGCAATTGCACCGGCACGGTGTGCAGCACCGGGCTGAGCAGGCCCGCGTGACGCGGCGTGCGAATCACGTGTACGCCTTCGGATGCGTGGAAATTGCTGTCCTGATCGGCGAAGACGAACAGTTCACCACCGCGTGCACGCACTTCCTGCATGTTGGATTTCACCTTTTCCAGGAGCGCATCGTTGGGCGCGATCACCACTACTGGCATGGTCGCGTCCACCAACGCCAATGGGCCATGCTTGAGTTCACCAGCGGGATAGCCTTCCGCATGGATATAGGTGATTTCCTTGAGTTTGAGCGCGCCCTCCAACGCAATCGGATAATGCAGTCCGCGACCGAGAAACAGCGCATTGTGCTTGTCGGCAAAACGCTCGGCCCACACCGCGATCTGCGGCTCCAGGTTGAGC # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.20,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 5 3429010-3429817 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZID01000001.1 Xanthomonas albilineans strain HVO005 Xal-HVO005-G1-Mol001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3429010 28 100.0 32 ............................ ACCTGGAAAGCGTGACCGCCGCTTCCGAGGAA 3429070 28 100.0 32 ............................ TGACACTTAGTTAAGCTTTTCATGGATCACTC 3429130 28 100.0 32 ............................ CTACGGCGACGATCAGCGTCGTGGCTTGTGGC 3429190 28 100.0 32 ............................ ATTGCAAACTATCAAAGCGAGTTTTCTTCTTA 3429250 28 100.0 32 ............................ GGGATGCCGAGGCCGAAGCGGCAGCAGTGATG 3429310 28 100.0 32 ............................ ATCGTACCTCGCTCAGGAGGTCGGCGATGCGA 3429370 28 100.0 32 ............................ CAGCAAGCAAAGCGCCTAAGCAGCCGCATCGT 3429430 28 100.0 32 ............................ AAAGAGGATTACCGATGGCTCACGCACCGGGA 3429490 28 100.0 32 ............................ ATGCACCCTGCTTGTCATCAAGTCGCGGCAAG 3429550 28 100.0 32 ............................ GATGCGCCAGGCCATCGAGGAAGGCGGGTTAA 3429610 28 100.0 32 ............................ TGGTGGCCGCATCCGCGCAGCACTTGCGCAGG 3429670 28 100.0 32 ............................ ATTAGAGCAATATATGTGCTTGCCATCTATGT 3429730 28 100.0 32 ............................ CGGCTGAGACAAGGCACAAGGAGCCGGTCATG 3429790 28 82.1 0 ......................TGTC.C | ========== ====== ====== ====== ============================ ================================ ================== 14 28 98.7 32 GTTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : CCCTGCACCATCTGATGGCAACCACCTGGCTGCATGGCGTTCGCGACCATGTGACCATCACCAGCATCGGTGCCGTGCCATCCGAGGCAGTGCACCGACAAGTGACGCGTGTGCAGGCCAAAAGCAGCCCCGAACGCCTGCGTCGGCGTGCCATGCGCCGACATGGGATAAGTGAGGATCTCGCCGTCCAACGCATTCCAGATTCGGCGGCAGAACAGTTGCGACTTCCGTTCGTCGTACTGGGCAGCCGCAGCACCGGCCAAACCGCGTTCCCGGTCTTCGTACGGCATGGCCCCGTACAGCAAGACCCCGTACCTGGCGACTTCAGCAGTTATGGACTCAGCCGGGGAGCCACCGTTCCCTGGTTCTGACCCTTTTTTCTTACGACCAAACCCACCAAGGAAAAACAAACACTTAGCAGCCGCCCCAGAAAAAGGGGTTGGCTGCTTTTCTTTATGCGTTTATCTTTCAAGTCAAAGACTTGGATAATAGAACGCCTA # Right flank : CCAGCACTTTCAATCTTCATCTTCATGGCGTTGCGCATAGAAATTTGCTGCCGCCTCGATCAGGTAGGTATAGCGTTTCACCATCGCCTGCCAGGCCTGCGCCTCCACTTGGTGTTCGGCGTGGATATCCTCCGGCACCTCGCTGACCTCATCGATCAACTTTGGGACTTCGTGATTCCACCAACGCAGCATCAGGTCTGGCCGCTGATGCGTGCGAATCAGCGACTCCACCAGCGACTGCATCGCCGCGAATTGCCGCACCGTGCGAATGCGCTGGCCTTCCAAGAAGTGCGTGCGCTCCTGTTGCTCAGCCAGCGCCTCTTCCAGGGCATCCAGCCGCTGGCGGAGGTCAGCAGGCCCTCGACCGAAAACTCTCATGCGATTACTCCCCGCCCAGCGCGAGCCGGGGCACCTGCGGTGCTTTCAGCAACAGCTTCTTGAAGTAGCTGTCCTTGTAATAAAAAATCTTGTTGGCCAGGATCGGATAGCCAATGCCCTCA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //