Array 1 3709-2686 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADKQD010000007.1 Clostridioides difficile strain CDI-28 20170785_7_length_114744, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 3708 29 100.0 37 ............................. ATGATAGAAGGTGAAACAGACCCGGATACCATATTGG 3642 29 100.0 37 ............................. TAAGCAAAAAAAGGAAGAACAATATCTCGAAAAAGTA 3576 29 100.0 37 ............................. TCATATTTTAAACTGTTGTCTTGTTTAATATATGGTA 3510 29 100.0 38 ............................. AAAAAATTTACTAATTCAGTATAATATTTATTATCTGA 3443 29 100.0 40 ............................. TAGATGATATTTCTCTATTTTCGTGTCTATATGATGCAAT 3374 29 100.0 36 ............................. CTGATAGAATTTATGACTTTGAAAGAGGCAAATTTG 3309 29 100.0 38 ............................. ATTGAAAAAACTGGCTTTCAGCTTGAAATTTTGTGAAC 3242 29 100.0 38 ............................. ACAGCTTCCTTGGTATTATCTGATATACTTTTTCCAAA 3175 29 100.0 37 ............................. TTGATTTCGTATTTACCTGCATTTGAAAAAGGATATT 3109 29 100.0 38 ............................. TCATTTGTATTCCAAAGATGTACAAGTCCAGCTACTAG 3042 29 100.0 37 ............................. TTATTAATTTTTCCGCTTCCGCTTGAAGTTTTGACTC 2976 29 100.0 37 ............................. TCTTTATCAATAGAGATTCCGTTATCTGAATTATATC 2910 29 100.0 35 ............................. ACGTGTAGAGTAGACAATACAGGTTTTTGGGTAGA 2846 29 100.0 36 ............................. TCTAGTTTTTTCTCTTTAGAAAAAATAAAAACAACT 2781 29 96.6 38 ............................T TAAAATTGTGTTTTCTCTTTCATACACCCACTTCATTA 2714 29 89.7 0 ...................T...A....T | ========== ====== ====== ====== ============================= ======================================== ================== 16 29 99.1 37 GTTTTATATTAACTATATGGAATGTAAAG # Left flank : CCTTGAGATTGTAAAGTAACAAAGTGAAAATGTAGAAAGAGAAAAAGAAATGGAAGGAAGAAAAGTATATAGATAAAGAGATATAACACGTATTTTGATTTAACTGTATAAGATGAAAAATTTGATGATTTTGAATAGTTTAAAAAATTGTTAATGAAAATAAAAGACTTGTTGAGCTAAAGTGCGATTACATAGGAAGGATGCAATAAAAAGAAAAAGGAATCATTGGAATAGAGAATATAATAAATACTTATAAGAATGTAGATGCTTTTAGTTTGTAAAATTATCCCATTTTTATTTTATAGTATGAGTTTTATGATATAATAAAAATATAAAAGTTTTGCAGTGAGCGATTTTTGTGATAAAGTAGGGTTTAATAGTTGAAATATAAAGCGTTGAGAGTGTATGATAACTGTTATCAATTGCACTATTGCTCGCTCACTGCAAGTTTAGGAGAATTGTATATGTATAAGTATTGGAAATACTTAATTTATTTTGGG # Right flank : GTTTTTTCTTATTAAATAAAGATTGAGTCACTTTATATTTAATAATACATATTCTAAATTGATTTTGTTTTTATATAAGAGAATTTGAATAATATGGAAAAAGATGATTAATAAATTATTAATTAGGGTATAAAATGATATAAATAGAATAAATAAGGGGTGGATGAAATGCTTGTATATAATAAAAGTTTTTATCCTAATGACATATTTCCAAGATTAGATTTTTCAAAAATAAAAAAACAGTTAAAATTGATAGATAATGACCTGTCAGATTTTGGAAGCATATGTATAATAGAAAAAGAACATTATACGATAAGTGTAAACAGTATAGGTGAAATAAATGTGTATTATGATTTAGAGTACGAAAATAAGGTGTATAGAATAGTTTATGAGATTGAAAAGTTATTTAAATCTCAAGTTGGAAGGTTTAGTATATCTACATACAGAAATTGATAATTAAAAAAGTAGAAATTAAAAAACTTAATACTAAAGATATAGAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATATGGAATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [85.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 86359-84352 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADKQD010000008.1 Clostridioides difficile strain CDI-28 20170785_8_length_113277, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 86358 29 100.0 38 ............................. AAGTAGTGATGACTCATTTCTTGCTAAAGAAACTATAC 86291 29 100.0 37 ............................. CTATCTGAAGAATTTAACTTTGTTAAAAAACACCCTT 86225 29 100.0 36 ............................. GTTTTAGAAGAATCTAAATTATCAGATTTAGACAAC 86160 29 100.0 37 ............................. AGTTTAGAAGGAAACTTCTTTAAAGGTGTAGAGACTA 86094 29 100.0 37 ............................. CCTAGTTCTTTATTTGTTATTAAAAGTAATTGATTTT 86028 29 100.0 36 ............................. TATTTATACCTACTTAGTTTTAGCAGCTGACGCTTT 85963 29 100.0 39 ............................. ATTATTATCGTCCAACATCATATTTAAAAAATTTTGAAG 85895 29 100.0 40 ............................. TGGTAGGAATAAGCGTTAGTTTGGCGACTGGGTACTTATT 85826 29 100.0 37 ............................. AAAAAAGAAGATAGGGACATGTATAAAAAGACAGTAG 85760 29 100.0 38 ............................. GTCTTAATAAATCTTTTCTTATAGAGTTTTTTAAATTA 85693 29 100.0 37 ............................. ACAGGCAAAGAAGGATTTTCAACTTTAGGAACTGTAA 85627 29 100.0 37 ............................. TATAAATAAATAAACAAAAAACAAAAACAATTATTTT 85561 29 100.0 36 ............................. ATAATTAACAGCACAAAAAGTAGAAATCGGAAGTAA 85496 29 100.0 37 ............................. CAACCAAGCAGTCGCAGAGTTTTCTTTCATATTAAAA 85430 29 100.0 38 ............................. AAGTCACACAACCCCCAAGCATTTAAAATTAGTTTAAG 85363 29 100.0 36 ............................. GTATATGTAATTTTTATAACTGATGGAGATAATTTT 85298 29 100.0 36 ............................. CGAAAATGGACTGTTTTATCTTTAGGAGTAGGTGAA 85233 29 100.0 36 ............................. AAGTAGATAAAATAAGTTTAATAGGAATAAGCCAAG 85168 29 100.0 35 ............................. ATTGCAAGTTTATTGTCATTAAATACTTGTTTCGC 85104 29 100.0 37 ............................. AAAAAGGGTTGCACAAAAAATGGGTTGCAAGAGTTGG 85038 29 100.0 37 ............................. TTAATAGGCAAATCATAAGGAGGATTATTCTCTCCAA 84972 29 100.0 37 ............................. GAAGATATTTCTGTAAAAATCAATAAAAGATTAAAAG 84906 29 100.0 38 ............................. AGATATTGTTTAAATTCTCTGACTAGGAAAATTGATGG 84839 29 100.0 38 ............................. GAGGAATATCTTTAACAGTAATCAAATTTTTAACCCTA 84772 29 100.0 37 ............................. GCGATTAATTGGTCAATCTTAATATTTTGTTTCTCAT 84706 29 100.0 39 ............................. AAGACTGTCTTAAATAAAAAGAAAACAGAGCCACAACAG 84638 29 100.0 34 ............................. GTTCATCACTAGCAAAATCAGCTACTACTCTACC 84575 29 100.0 37 ............................. AGGATAAAGAAAAGACTCACACAAGACACAGTGTCAG 84509 29 86.2 36 .........C............GA...G. AGAATATTAGCAATATCAACGAGTATTTAGAAACTT 84444 29 79.3 35 ............TA...CA....A....A TTGTAGAATAAACAATAGCATATACTAAAACATCC 84380 29 75.9 0 ACC.............A.CA...C..... | ========== ====== ====== ====== ============================= ======================================== ================== 31 29 98.1 37 GTTTTATATTAACTAAGTGGTATGTAAAT # Left flank : CATTTTATAAATGATGAAAGGTACAAAGTTTTAAAGGTGTGGTGGTAAGTATGTTTGTTATTGTTACTTATGATATTGTTGAAGCAAGGTCGTTAAATAGAATTAGAAGGATACTTAGAAAATATTTGACTTGGACGCAAAATTCTGTTTTTGAAGGCAATATTACTGATGGAAAGTTACATAAATGTATTTCTGAAATAGAAAATATTATTGATAATAGCGAGGATTCAATCTATGTTTATGAGATAAAAAATCCTAATTCAATTAAAAAGAAATGTTATGGGATTGATAAGTATTCTGATGAAATGTTTATATAGGTTTGCAGTGAGCGATATTTATGCTAAAATAGGTGTTAACAGTTGGAATATAAGGGATTGAAGGTGTATGATAACTGTTATCAATTGCACTACTGCTCGCTCACTGCAAATTTTGATGTTTTTATTGAATTATAATTGCTTGATTGAAGTATTTTCAATGTATTCAATTATACCTATTTTGGG # Right flank : AAAATACACTTACCTATAAACATTATAAAATCAATACAAAAATGAGGTGAAACAAAATTTATGATAAAGAAATTAAACAATAAAGACATAAATAAAATCATGGAAATATGGGAAAAAAGTACAATCAAAGCACATGACTTTATAAGTAAAGAATACTGGCAAAATAACTATAATACTGTTAAAAACGAATATATACCTATATCAGATACATTTGTATATGATGATAGAGATGAAATAAAAGGATTTATAAGCATAATAGATAAAAGCTTTATAGGAGCTTTATTTATAAAACCCAAATACCAAAATCTAGGTATCGGAGGTAAACTTTTAGATTATGCAACTAAAAAATATAAAAGTCTAAGTTTAGCAGTATATAAAGATAATAAAAAAGCAGTTGTGTTTTATAATAAAAAAGGTTTTAATATAGTAAAAGAACAAGTAAATGAAGATTCAGGATTTAAAGAGTACATAATGGAATATAGTAAATAATATGATTACAT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [17-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 72853-73142 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADKQD010000011.1 Clostridioides difficile strain CDI-28 20170785_11_length_98329, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 72853 29 100.0 36 ............................. TGGTATTAGAAAGTTTGCTGATAGAATCTAGCATAC 72918 29 100.0 36 ............................. TATAGTTGTAACCGCTGATTTTAAGGAATTAAACCC 72983 29 96.6 37 ............................G CCAAGTTGAAAATTTAGAATCTATGTCTTTACACCAT 73049 29 89.7 37 .................CA.........G ATGGGAGCATTAACTTTAGCATTTGGAGCATTAGCAG 73115 28 86.2 0 ...............T....-.CT..... | ========== ====== ====== ====== ============================= ===================================== ================== 5 29 94.5 37 GTATTATATTAACTAAGTGGTATGTAAAT # Left flank : GGAGGTACAAAGTCACTAGAAAACTTTCATCAAGAGTCCACAGATATTGAGGATTCTAAATCAAGTGATAATGTACAACAGGATGCCTAGTGAGATATTAAGAATTAAAGATGAATATACTTCTTTTTGTTTCGATGAAGCTTGTATGTTTTTAGTAGATGCTATAAAAAATGATAAAAAGCTTAAATTTGAAAATGATGAAAAGAAAACTATAGATAAAAATGAGAGAAAAACTTTTGTCCAAATAGCATTAGAGAAAAAGAAAAAAGTTAATAGGTAAAATATTCTAAATGAATAGAGTGAATTAATGTTAATTTATGATATAATGATAATATAGATATTTTGCAGTGTTCAATTTCTTATATACATTGGATGTAATCATTGAAAGTACTATGATATAAGCATATTTTGTGATATATCAAAAACACTACTGGTTACTCACTGCAATTTTAATATGGTTTTATATGTGTAAGGATTTAAAATGCTCAATTTATTTTGGG # Right flank : TTTTGAACAAATACAGAAAACACTTATTTAAATAGTAAGTGTTTTTGTTGTGCTTAAATTTAATCAGTTATGTGAAATTATTATGGAATAATATTACAAATAATTAATGAAAAAATTATTAATATATTATATAATTGAACTAGAAAATACATTTAATTTATAGTGAAGGAGAATGTTATGGCATTATTTGGGGATAAAGTTGATAAAGAAGATAAAAAGAAATTAAAAGAGCAAGAAGAAATACAAAAATTCATGAATAAGTATCAATTACAAGATTTAAATGAAAAAGATTTAACTATTTTAAGAAGAATAGCAGATGATTTATTTGCAACTGGACTTATAAAAACAGGATTAGCATTGAGTTTTACAAAAATAGAAGAACAAACTAAAATAAATTATCTTAGTGCTTTAGTTGAGCAAAACTGGATGATAATTAGACAATTATCTCAATTGAATAGCAATATAGAAAAACTTGTAGAAGATAAAAAATAATGGACTGA # Questionable array : NO Score: 5.70 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTATATTAACTAAGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:78.57%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 15397-16148 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADKQD010000009.1 Clostridioides difficile strain CDI-28 20170785_9_length_104464, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 15397 29 100.0 37 ............................. CTTTCAGAAAAGGGCAATAAGGAATCTTTAAGTGTAG 15463 29 100.0 37 ............................. ACAAAAGAGTGGACTATAGATGTTGTAAACTTCTTAA 15529 29 100.0 37 ............................. AACATCCTTCCAACTCCGTCACTATTTGCAGCGTCAG 15595 29 100.0 37 ............................. ATGTTTGGCGACATTGTGGGAATAGTAGTTCTTTTTT 15661 29 100.0 37 ............................. GTTCGACTTGATTCAAATTAAGTTTAACTCTTTCTTC 15727 29 100.0 38 ............................. ATTTTTCAAACAGCTTTTGGAGCTGTATCTTCGATTGT 15794 29 100.0 36 ............................. ATACTTTCAGACTGAACTTCCTTATCGCCTTCTAGG 15859 29 100.0 37 ............................. TTTTTCAGTTCTGAATCAGTTGGAGATGCTGTTGCAA 15925 29 100.0 37 ............................. TTACTTGACTGGAAGCTTCTGACTCTTGTATATGTTT 15991 29 100.0 35 ............................. AAAGTACTGTTTGCTGATTCGGTAGCGTCTTCTGA 16055 29 100.0 36 ............................. ATTGCTGCTTCTGCCAATTCGGGCATAGTAGCAGGG 16120 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 12 29 100.0 37 GTTTTATATTAACTATGTGGTATGTAAAT # Left flank : AAGCACTGATTTTTATGTGGTTGTATTGTATGAGAGTTCTGGAATAGATTCATATTGGGTTTTTATAGATACTGATACATGGACTGTTCATGATATACAGCGTTTAAATCAAAATGAAGAATTAGTATCATATCATGATGTAAACCCAAATACAGAAGCAGATAAGCATTATAATAGAGATGTTGATGACGTTAATATTATATTTGTTCCATCAGAAAATAATCCTTTTGATAATGATGTAGATGGAATAAATTAAATATTTATTATAAGGAGTTAAACTATAAATTGATATAAATATTTAAAAATAATGTATTTATGATATAATAAAACTATGGAAATTTTGCAGTGAGCGATATTTATGATAAAATGGGGCTTAGCAGTTGAAATATAAGGTATTGAGGGTGTATGATAAGTGTTATCATTTGCACTACTGCCCGCTCACTGCAAATTTAAGAGAGTTGTATATGCGTAGGCATTGAAAATACTCAACTTATTTTGGG # Right flank : TAATTTTTAAATAATAGAAATAGACTAGTATTTAGCTAGTCTATTTTTTTCTTTTCTTCTTTTTAATTCTTCCATTATAAATATAGCTGCTATAACTAAATAGTTAACTTCTAAACCAATTGCTAGGTCAACTATTGTAGTAACAGTTACATTTTTATAATTACCTTTTTCTAATTTAGATATATAACTTTTGTTATAATTAATTTTCTCTGCTAACTCTAATTGTGTTAAATGTCTCATTTTTCTCAGTTGTCTTAACATAAATTTAAATCACCTTTTAATATATTTTTTAGTAAATTCAGATAATTATATTATGTGCATTTTTGTGGGGAAAAGTTTCCTATTAGTCGATTTTTTTGTTGGAAATTTGTGCTAAAATATAAGTAAGAAATAACTCTAGCTAGATAGAGAAAAAATAGAAAATTGTAGATTTTGATAAGCCTTGCAATTAAATTTATATAAGTGTGAGAACTTTATTTCCAAAGATGGGAGGATGATTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [66.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 50716-51072 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADKQD010000009.1 Clostridioides difficile strain CDI-28 20170785_9_length_104464, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 50716 29 96.6 37 A............................ CTTAAAGCTGTTGTAGATTTTGTAAGTAATGGATTTT 50782 29 100.0 37 ............................. GGTGCTTATATAAACTTTATCTCAGCTAAGAGGGCAA 50848 29 93.1 37 ...............T.......A..... ATTGCAATAACTGGGAAAGATATAGCAGAAGCATTAA 50914 29 100.0 36 ............................. ACTAGTGATTGTGTCTGAGCACCATTTAAAGTTTTA 50979 29 100.0 36 ............................. AAAAGAGCTGCAACAGCTATGAGAAAATATGGAATA 51044 29 89.7 0 A......................A....T | ========== ====== ====== ====== ============================= ===================================== ================== 6 29 96.6 37 GTTTTATATTAACTAAGTGGTATGTAAAG # Left flank : GAAGCTAAGAAAAAAGAGGAAATAGAGAAAAAATCCTCAGAGGAGAACAAAGGAAACATGGAAACGAAAAAACAAACATTAACTGGTGAAGAATTAAAGAAAAAAGTTGATTCTATAATTCCAGCAGAGTATAAAGGAAATTACTACACAAATGATGTACTAGATACAGATGGTAGCTATGTACTTAGTTTACAAGTTCAAAATGCAAGTTTTGACAACGAAAGTAGTTGTAAGGCATTTACTAAAGACTTGATTAACAAGTTAAAAGAATTCAGAATAGATTCAGCAGAAATTTATTTCGTGGGTTCAAGCGGTCAAACAACATATCAAATTAACATAGATGACTTTTTGAAAGTTCAAGATAATATTGATAGCATAGACGATATGGAGTTTTTCTCTTTTAAAGATTTTAAAAATTAGAAACAAAATAGAGACATTTGCTTAAATAGCATGTGTCTCTATTTTGTCAAATTATGTTATAATAGTACTTAAGAAATATA # Right flank : TACATTGTAGGTGGGTGGTGAAACACCACATACATTGTTTTATGTTTAAAATTAAATAGAAAAAGGAAGCACTTACTTTTTGGTATGTGCTTTTGTTTTGTCTTATATTGGAAATTTGTCTAAAGATAAATTATAATGATTATATAGATATTTATTAGGGGGATTATACTATGGGATTATTCAAAAAAAAGGAAAAAGAAAAAGGAATTTGTATGATTTGTGGTAATGAAGGAAATGCTTTAAAAACTGTAGATAATGAGTTTTTGTGTGATGAATGTTTTGAAAAATGTAGAGGCGAAATAGCTGTTCTTGGAAAAGGATTAAAAAAACTGACAAGTAAGGAAGTTATGAATGCTGTAGAGCTATGTAGAGATAGTTTTGGAAATTTTGTTAAAAACACATTAATACAAATTGTATATTTAGGAGGTCATCCTTTATTTAATAGAGAAGAGATGATTTGTCTCTTAATTAGAAGTGACAAGATAGTTGTTAAAGCTTTT # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:78.57%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 3 53710-54525 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADKQD010000009.1 Clostridioides difficile strain CDI-28 20170785_9_length_104464, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 53710 29 79.3 36 GAG..........A.T............T GGAGTAAACATAAATACTTTTGGTCATGGTTACACA 53775 29 96.6 36 G............................ TTCATTGTTGGCACTATATGAGTACCATTTTTACTA 53840 29 100.0 37 ............................. ACTAAAACATATTTAGTACTACCTTTTTTCTTAACTC 53906 29 96.6 37 ...............T............. TCTTCAACTTCTTGTGCAACTTTTTTAGCTGCTTCTA 53972 29 96.6 37 ...............T............. GTTTTTATTGAAGTTTTTACTGTATTAGAATAAGCTA 54038 29 93.1 36 G..............T............. AAAAATACAATAAAAATATCTATAAATATGTTATTA 54103 29 89.7 37 G..............T............T TTAAATGATGCAGCAAAAGGTGCAAAAGACACAGCAG 54169 29 100.0 36 ............................. GCTGGAATTAATGCGACTACAGTAGAAGAAAAGAAA 54234 29 100.0 37 ............................. TTGTAAACATATAAGTTGCCTTGAATCATATAAGCAT 54300 29 100.0 37 ............................. GTCGCAACAAAAGCATGATAAGATTTGTTTCCACCAA 54366 29 86.2 37 ................A...C......GT CAGCATTCTAAGTGGGTGGTAAAACACCATATACCTC 54432 29 89.7 37 G............A.T............. TTTATAAATTTATCTATAAAGGTTCGAAATACCTTAC 54498 28 79.3 0 G..............T....-..TC...A | ========== ====== ====== ====== ============================= ===================================== ================== 13 29 92.9 37 ATTTTATATTAACTAAGTGGTATGTAAAG # Left flank : CTCAGATGGCTGTTTGTGAAATCATTAAAAAGATAAAATTAGAAGAAAATGAAGTTAAGGAAATTTGGGAGACAAATGGTTCTTGGACTGGTACTGTAAATAAGTATACACAAAGTGTAATAGATAAGGTTAAGTGCTGGATAGATGATAATAATAAGCCTGCTAAGATACAGGGTGAAAAGAAGAATTATCATGTGGTTTATAAGATTGAGTAAATTCTATTGTATTAAATAATTTATTTTAGTTTAGTCTTGAGGGGGATTAATACAATGTATGAGAATTTACTTGATATGGATAGGATAGAACTTATTAAAGAACTTGGAAGTATCTTTGAAAAAATGAGAAATGAAAATCCAGAAAGATTTTATAGATTTGTAAATTTAGTGAAAGAAGAAGTTAGGAAATCAGAAGAGAAAGAGAATAAATAACATAGATAAAGCACTTGGATATTACATAGTTTCAAGTGCTTTGTTTGGTATAAAATGGTATAATAGAAGTAA # Right flank : ATTAAATAAAGAAAAGGAAGCACTTACAAACATGTAGGTGCTTTTGTTTTGCTCAAAATTGGTCGGTTGAGTAAACTAATTAGAAAAAATTAGTAAAAACCTATTGAATTATTGGCAGACATCAATTATAATAATAAGTGTCAGCCAATAATCATACAGGAGGTGATTACTATAACTAAAAATAAGGTTGGCAGACCTAAAATGGAAACTGCTATGAATAAAAGAATTACAGTTAGATTGGATAGTAAGCATGAAGAAATTTTAGAAACATATACAAAAAAATATGGTATTACTAAAAATGAAGCTGTAAGAAAAGGTATTGAGAAGTTAGAAGAGAAGGAATAAAAAATAAGGGTCACTCTCCCCGACCAAAGATTGAGTAACCCCTATTGATGTATACTACAAATATACTAATGTTAGTATACATCATTCCTTAAAAAAATTCAAACTTAAGGAGTGTAATATTATGAAAAATTTAATAGTAAAAGAGTTCAATGGAA # Questionable array : NO Score: 5.40 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.49, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTATATTAACTAAGTGGTATGTAAAG # Alternate repeat : TTTTATATTAACTATGTGGTATGTAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:81.48%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [4-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 4 56326-56877 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADKQD010000009.1 Clostridioides difficile strain CDI-28 20170785_9_length_104464, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 56326 29 100.0 37 ............................. CAAAATGTCTAAAGAATTACCACCATCTTTTTCGATA 56392 29 100.0 37 ............................. TAGTCTTATTTTCAGCGCAGCCATTTACTACAAGTTT 56458 29 100.0 37 ............................. CGATATGCATCTGTATAAGTTTGATGTATTTCATCAA 56524 29 100.0 36 ............................. GTTGAATTTATGGATGATGCAATGGCAGCTCTTAGA 56589 29 100.0 36 ............................. AAAATAATTATATTCTTTTCTAACCTGTCAAGAAGC 56654 29 96.6 36 ...............A............. TTTTTTGAGGATGAAAAAGAGGAAACAAGAACAGCA 56719 29 96.6 37 ...............A............. GTTTATATGTTAAAAAGAAGTGTGGAAGAAGTCGAAA 56785 29 96.6 36 ...............A............. TCTTCTTTTGAGATAAACAGTAAAGTAATAGTAAAT 56850 28 75.9 0 AA......C...........-.CT....A | ========== ====== ====== ====== ============================= ===================================== ================== 9 29 96.2 37 GTTTTATATTAACTATGTGGTATGTAAAG # Left flank : AGATTGCAGGTGAAAAGAAGAATTATCATGTAGTATATAAAATTGAGTAAATTCTATTGTATTAAATAATTTATTTTAGTTTAGTTTTGAGGGGGATTAATACAATGTGTGAGAATTTACTTGATATGGATAGAATAGAACTTATTAAAGAACTTGAAAGTATCTTTGAAAAGATGAAAAATGAAAATCCAGAAAGATTTTATAGATTTGTAAATTTAGTGAAAGAAGAAGGTAGGAAAAAAGAAAAGAAAGAGAATAAATAATATAAATAAAGCACTTGGATATTATGTTGTTTCAAGTGCTTTATATGTTAAAAAATGGTATAATATAGGTAAGAGTTTTGCAGTGAGCGATTTTTATGTTTAAGTATGGTTTAACAATTGGAATACAAGGTATTGAGAGTATACGATAAGTGTTATCAACTGCACTACTCATGGTTCACTGCAAATTTGAGAGAGTTTTATGTGTGTAAGTATTGTAAATACTCAATTTATTTTGGG # Right flank : ATTAAAAATATCAAAGAACACTTACTTAAATAGTAGGTGTTTTTTTAATTGAAAGGATGTGATGATAATGAAAAAAGTAATAAATAGGAAAAATATGTAAGAGTTATATGTTATAATATTCATGCAAGGAAAAAATGATTGAAAAAGTGTAAGAGTAGTTATTTCCATATTAAACGCCAAATTCCATAGTGGAAGGAGGTGGAGCGATATGGTAATAGATTTTTTATTAAGTGTACTAGCTGGTGTTGTATCAGCTTTTATGTATGAGAAAATAAAAAACTACTCAAACGCCAATAAGAGTAGTTTAAAAAAGTAATTAATTTTTAATCTGAATTGGAAATAACTGCTCTTGTATAAAGTAAATCATTATTTCCTTGCTTTTATTATAGCATAAATTAGAAAAAATATGCAAATAAATAAACAATGCTTATTAAATTTAATAGGCATTGTTTTTATTTTAATATTAAATAAGGAAGTGAATATATGATGAGAAAACTGCA # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGGTATGTAAAG # Alternate repeat : GTTTTATATTAACTAAGTGGTATGTAAAG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 175046-175538 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADKQD010000003.1 Clostridioides difficile strain CDI-28 20170785_3_length_176772, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 175046 29 96.6 38 ................T............ AAGAATGTCTAAAGAATTACCACCATCCTTCTCGATAT 175113 29 100.0 37 ............................. GACACAAAATCTTTATGTTGTAGGCGGTGGAGCATGT 175179 29 100.0 36 ............................. GGTCCAAATACTTTTGATTGCAGTGGGTTCACTCAA 175244 29 100.0 38 ............................. ATGTCAGTCACTAAAGTAAAATATTGTTGTTCTGCCAA 175311 29 100.0 38 ............................. AAAGAAATTATGACTAGCTTTAGCTTTGAAACATACGA 175378 29 100.0 37 ............................. GTAAAAAGAGAATGCAAATCCCAAGGCAAACTAAAAG 175444 29 100.0 37 ............................. GATAGAATCGGAGAATGGCTGTCTAATACATCAAAAA 175510 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 8 29 99.6 37 GTTTTATATTAACTAAGTGGTATGTAAAG # Left flank : CTATTAACTTATGAAATATCTGTAAATGAGTAGATATTTCATAAGTTAATATTTATTGTTTGTATAAAATATTTGGTAAAAATAAGTAAGTTTTATATGTTATAATAATTGTAGCAAGAATAATAATCTAAAGTGGCAAGCATGTCAGCTGGTGTTATATCAGTTTATATTTATGATAAAATAAAAATCTCCCAAACGCCAATAAGGATGATTTAAAAAAATAATATTTTCACTTAAAAATAATCACTCTTTATAGGAGTAAATTATTTTCTTGATTTTATTGTACTACAAATTGGTACAGATATTTAAAAATAATATATTCATAATATTATAAATAGTTTTGCAGTGAGCGATATTTTTGATAAAATAGGGCTTAACAGTTGAAACATAAGGCATTGAGGGTATATGATAAATATTATCATTTGCACTATTCGTGGTTCACTGCAAATTTGAGAGAATTGTATAGATGTAAGTGTTGGAAATACTCAATTTATTTTAGG # Right flank : GACAGATCTAATATCAAAATAAGGTTATGACTTTTAAAAGCATAGCCATATCAATAAAAATTTAATTATCATTTAAAAAATAAATTTTTATTTAAAGAATACACATAAATATTTCCAGACTTAACTCTCTTAAACCATTTTCATATCCTTTAGTAGATACTTTTGTTATTTTTTAATCTTTAGTAACTTATTCTTGAGTGAATCTCTTATTTTTTCTAAGCTATTTCAAGCTTCTCAAAAAATTCTATATTTATATTCATCACATATATAATACAATTAATTCAGTTTTAATTGCCAATATTTAGTTTTTCTGTATCTGATAAACCAAGAATATAATCAGTATATAAACCAAAAATTTTAGCAAATATTATTAACCCATCGTCTCTTGTTGGTCTTTCACCAGACTCTATTCTATTCATAACACTTGTATTTATATTTGTTTTTTCAAGCAATTCTTTTTGAGAACTATTCATATTTTCCCTAGTATATTTAATTCTTTG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 23553-24244 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADKQD010000042.1 Clostridioides difficile strain CDI-28 20170785_42_length_32504, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 23553 29 100.0 37 ............................. CATCAATTTTCCTCCGCACGAAAAAATCAGAAGGGGA 23619 29 100.0 37 ............................. ACTGCAGATATCGAGTTATAACTTGAAGGAACATTTA 23685 29 100.0 38 ............................. CAGACATCAACACTAAAAGCAAACGGTTTATTTACAAC 23752 29 100.0 37 ............................. TGTATATCATTAATACTAGTATCCATTTTTTGTAATA 23818 29 100.0 37 ............................. TATAAAGAGCTTGGGGTAGCAAAAGGTGTTACATATG 23884 29 100.0 38 ............................. GAAAAAATAATTATTACTGTTTCATCAAATGCAACAAG 23951 29 100.0 36 ............................. ACTGATGTTTGAAATGTTATATCCTGCACAACTCCT 24016 29 100.0 37 ............................. TATTATCTATAATCTGAGAAGGTGTATAGTCTAAATT 24082 29 100.0 38 ............................. TTATTTATCTTGTACATATTCTTTAGTGCAACTGCTAC 24149 29 100.0 38 ............................. CCATCTTTTGTTGCTTTACATAAATTTATATTACTTAC 24216 29 93.1 0 ........C..............A..... | ========== ====== ====== ====== ============================= ====================================== ================== 11 29 99.4 37 GTTTTATATTAACTATATGGAATGTAAAT # Left flank : TAACTATAATAAAAATAGATATCTATTTTTAGATTAAAAATAATATATCATAAATAAAATAATAAGAGGTAGATACAGTTTTAAGGGAATACAAAAGTTTTTAATTAAACTATGCTTGTTCAGATAGATATTTATTTAAGAAAAAAGACTATTAAAAGCAATATACAAGAATGATATATTAGATTGATTAAACAAGCATAAATATTATGTAAAAAACTTTAAGTTATAGAATTTAAATCCAATGTAGATAGATTACGTTTTTTCTTGCTTTTATTATGGTATAAATTGGTATCAATATTCAAAAGTAATATATTTATGATATAATAAAATTATAGAAATTTTGCAGTGATCGATATTTGTGATAAAATTTGGCGTAACAGTTGAAATATAAGGTGTTGAGAGTGCATGATAAGCGTTATCAATTGCACTATTGCTCGTTCACTGCAAATTTAAGAGAGTTGTATACGTGTAAGTATTGAAAATACTAAGTTTATTTTGGG # Right flank : TTTTTATAATTTTCTTTTAATGTGTTATCTTATGATTATCTAGTTATATTAGCATACAAAAATATAATAAAATTACACTATATTATAAAAACCAAAAGGTAGTATAGAAATCCTATTACCTTTTTATTATTAATTTTATCAGTGTTTTATTATAAATAGCTTACATAATTACACATTTTTTCTGATTAAATAATATGATGCTATTGTTATAATAGATACTAATGCTAATGATGTTATTGCAGTATCTAATCTTCTTATTAATAAACTCATTTCTATATATTCAAGTTCTATTAAATATTGATAAAATATTTCTAGTTTAACAGCTTTTTCTCTATCTATATTTCCATACTTTAACTCTAATTTATCTAAAGATTTTTTATTACAATAATTAACTTTATGTTTAATTAAATATCTTATTGTAGCACCTATTACAATTTTCACTCTAACAAGCATAAATATAATATTCCATCCAAAAGTTAAGAGGGTATATCTTTTTTTAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [71.7-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 18381-18933 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADKQD010000059.1 Clostridioides difficile strain CDI-28 20170785_59_length_19150, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 18381 29 100.0 35 ............................. CCTATTGGGTTTGCTTGGAAGTTTCCTTACAACTT 18445 29 100.0 36 ............................. AGAGAAATTTTATTCAAAAGTATAACTTCATCAGTA 18510 29 100.0 37 ............................. ACAGCTCCTAGACCACTTAATTGCGTTATTAATTCTT 18576 29 100.0 38 ............................. TCATGAAATAGGAGAACAGGATTACGATAACATGGACG 18643 29 100.0 36 ............................. TATCATAATCAACTTCAAAAAGAGCAGCTCTACCTT 18708 29 100.0 37 ............................. CTATTGTAGTTGTACCTTTACCTCTCATTTTTGCTTT 18774 29 96.6 37 .................A........... CTTATACTTAGTTAGAACTATATATCGACACAAATAT 18840 29 82.8 36 .C.............CA..A...A..... TGCAATTTTTATTCGTTGTCCAATCGCTTGAAATTT 18905 29 96.6 0 ...............C............. | ========== ====== ====== ====== ============================= ====================================== ================== 9 29 97.3 37 GTTTTATATTAACTATGTGGTATGTAAAT # Left flank : CTATTATTATATATAACTGACACTTAAGTGACATTTAAGAAAAATATAATGCTTACTTACATAAAATGGAATGTTATTTAAAGAGAACTTTGATTATATTTTCAAAAGCTTTTTTATCCATATCGTTTAAAACAAGAAAATATCTATTCATAGTTATTTTTATATTAGTATGTCCTAATCTTTCAGAGATGATTTTTATATTAGTTCCAGCTAGAAGAAGAATTATTAGAATAGATAATATAGTAAGTATTTACAAATATGTAGGTGTTCTTAAATTGATAAATTATTCCATTTTAATTTTATAGTTTGAATTTTATGATATAATAAAAATATATAAATTTTGCAGTGAGCGATATTTTTGATAAAGTAGGGTTTAACAGTTGCAATGTAAGGGATTGAGGGTGTATGATAAATGTTATCAATTGCACTACTCATGGTTCACTGCAAATTTGAGAGAGTTGTATGTGTGTAAGTACTGAAAATACTTAGTTTATTTTGGG # Right flank : TTGCAACAAGTATAGGTAAAATACCCCAATAATTTATACAGCATTTTCTACTTTAAAATATAATTATTTTTTATCATTTGTAGTAAATAATTACCAGATAACATTGACTTTAGTTTTAATGATTAAAATATAAAAGTAGAATAATTATAAAAAGTATTGAAAAGTTTATAAATATATATAATAAAACTTAATGACAAGATATTAGATATAAAAAATA # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //