Array 1 98087-100250 **** Predicted by CRISPRDetect 2.4 *** >NZ_MATK01000020.1 Salmonella enterica subsp. enterica serovar Typhimurium strain STy02 contig27, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 98087 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 98148 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 98209 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 98270 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 98331 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 98392 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 98453 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 98514 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 98575 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 98636 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 98697 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 98758 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 98819 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 98880 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 98941 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 99002 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 99063 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 99124 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 99185 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 99246 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 99307 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 99368 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 99429 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 99490 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 99551 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 99612 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 99673 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 99735 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 99796 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 99857 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 99918 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 99979 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 100040 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 100101 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 100162 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 100223 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 36 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 116383-117187 **** Predicted by CRISPRDetect 2.4 *** >NZ_MATK01000020.1 Salmonella enterica subsp. enterica serovar Typhimurium strain STy02 contig27, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 116383 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 116444 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 116505 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 116566 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 116627 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 116689 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 116792 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 116853 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 116914 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 116975 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 117036 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 117097 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 117158 29 96.6 0 A............................ | A [117184] ========== ====== ====== ====== ============================= ========================================================================== ================== 13 29 99.5 36 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.23, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //