Array 1 103202-103951 **** Predicted by CRISPRDetect 2.4 *** >NZ_VHEN01000005.1 Acinetobacter baumannii strain MRSN489678 MRSN489678_contig00005, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================== ================== 103202 30 100.0 30 .............................. TTCCGCAACTCGCTACTTCCCTGATGCAGA 103262 30 93.3 30 ............................TG GAAGATTTGCTTATGGCGTTCTGGAAAGAA 103322 30 100.0 30 .............................. TGCTTAGTAATGCGCAAAAACGGTCATCCA 103382 30 96.7 30 .............................A ACTTACACTTCTCAGCGTCAAACCATGCGT 103442 30 93.3 30 ............................GA TTACATCCACGAAAAGAGCTTTAATCAGGA 103502 30 93.3 30 ............................TG GCAGAACTTTTCATGACGCTCATTCTCTAA 103562 30 100.0 30 .............................. ACCTATCAACGTTAAACCAACGATTGCCAG 103622 30 93.3 30 ............................GA TGCAGAAGATGTTTTAGAACGTTATGACGA 103682 30 100.0 30 .............................. TGGGATGTTATGAATATTCGACATTACCAA 103742 30 100.0 30 .............................. CAAAATAGAGTTGGCCTTCCTGTTTGGCCT 103802 30 96.7 30 ............................T. CAAACGCTTCAACCAGCCACGTCTTTGAAG 103862 30 93.3 30 ............................TC TTCCGCCAAATTCTAGGAGGTTAACATGCT 103922 30 96.7 0 ............................T. | ========== ====== ====== ====== ============================== ============================== ================== 13 30 96.7 30 GTTCATGGCGGCATACGCCATTTAGAAAAT # Left flank : GGCAAATGGCTAGAACGATTCATTGATTATGTACATATCACTCAACCGAGAGAAGTGCCTCGAGCCAAGATTACAGGTTATGCGCATTACTATCGAGTTAATCATAGAATGAGTGTTGAGGAACGTATAGTTCATCAAGCACAACGTCGTAATATTTCTTTGGATCAGGCTAGACAGCATTTTAAACAATATGTTGAGCAACCAGTGGTTGAACCATACGTAAGTTTAAAAAGTCTCAGTGCAAAACGTGAGGAAAATGTAGATCGCCCCTATCGTTTATATATTGGTAAATCACTTGTTGATGAGGCAAGGGATGGGATGTTTGGAACTTATGGACTAAGCCGAATGACAACAGTCCCAGAGTTTTGACCCAATATTTTTTCTATTCTTTAACAGCTCAATAAAATCAATAAGTTACAATAGGTCTTTTTTGATTGGGTAAAATGCCAAAATCCATGATAAACACTTGTTGTAACTTATATTTTTACTATAATTTTATA # Right flank : GTGCATACTTATTGCCGCCAGCAAGT # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.62, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.10,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [80.0-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 32-3243 **** Predicted by CRISPRDetect 2.4 *** >NZ_VHEN01000006.1 Acinetobacter baumannii strain MRSN489678 MRSN489678_contig00006, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 32 30 93.3 30 ............................CA GAAGTAAGTCTTGCAGATGCACGATCTAAA 92 30 96.7 30 ............................A. CCGCCGATAAAACCCTTACCCGATACGCCC 152 30 100.0 30 .............................. TGAAAGACTTGAACGTGGTCAAGTCCTCCT 212 30 96.7 30 .............................G TTGCGCTGTTTTTGAACGTGTAATTGGATA 272 30 93.3 30 ............................CC AAAGCGGTTAAGCCTCCAAGATTTGCATAC 332 30 96.7 30 ............................A. GGTAATACAATTCAATCTCACTACAAGAAT 392 30 96.7 30 ............................A. ATATTTTACGTGTTGATTCAACTACGGGTG 452 30 100.0 30 .............................. TGGGGTAACTGGTGCCTTTAAGTTGTTTTG 512 30 100.0 30 .............................. CCAAAGTCTTGTTCAATATCTTGTTGTTGA 572 30 100.0 30 .............................. GCTCATCAATACAGCTACAAGAAAATTTGT 632 30 93.3 30 ............................AG CATAAGCATAAAAATTATGTGTGAATATCA 692 30 93.3 30 ............................AA TATGCAACAATAGGAAATTGCTCAGCATCT 752 30 93.3 30 ............................AG TTACATCATTGCTTTTAGTCTTTTCTATCT 812 30 93.3 30 ............................GC ATAGGCATTTACTCCCGCTGTGAGTGAAGG 872 30 96.7 30 ............................A. CTGCAAGACCACTGATAGTTGTTGAGAATC 932 30 96.7 30 .............................G TGGCGTAGCGTTTCCAAAGTTGCCCATTGG 992 30 93.3 30 ............................CC AAGCGTGACCAACTCACCAGTTGTCACAGG 1052 30 100.0 30 .............................. TTGAAACTTATAGGCTTGGCTTGGGTTATC 1112 30 96.7 30 .............................G AAAGGGATTTAAAAGCAGTTACATAAAATT 1172 30 96.7 30 .............................G AATTGGATTTCGTAAATCATTGAGCAAGTT 1232 30 93.3 30 ............................AG CATCAAGTAGATCAGCAGTTACCTGTTCAG 1292 30 100.0 30 .............................. CTGTATTAGTGGCCTTCATGTGCATTAAAA 1352 30 96.7 30 ............................A. ACATGCCCACGTTGAAAATCGGGTACCAGT 1412 30 96.7 30 ............................G. ATTAAAACTGCTTATAAACTTTCTTAAATC 1472 30 100.0 30 .............................. GAAAAAAAGCATCATATTGTTCGGGGCAGG 1532 30 96.7 30 ............................A. TTTTTCTGTTAACTCTAAAATACCCTTCCG 1592 30 96.7 30 .............................A AAAGTAGAGAGTGGCGGTGATTCACTAAGA 1652 30 96.7 30 ............................G. TGTCTGATCCGACAATTTGGCTGAGTACGT 1712 30 100.0 30 .............................. GTACAACAATATGACCCGTATCGATGTAAC 1772 30 93.3 30 ............................AA CAATTGCCTGAGTGGTATGAGCCACCAGTA 1832 30 100.0 30 .............................. TGATAGCTAAAGTAGAAATCAAAGTCGCAA 1892 30 100.0 30 .............................. TTATTGCTGGGAATGAAACATCAAAGCAAA 1952 30 100.0 30 .............................. CTCATCGTGAAGGTTTTGCAAATATGCCTT 2012 30 96.7 30 .............................G TCCGAAATTCAGATGGTGAAGTGACATATG 2072 30 100.0 30 .............................. CAACCTACGCAAGTATTATGGGAACTATTT 2132 30 96.7 31 ............................G. CTTTATCAGTTACGATGGCATGAGTTTTTGT 2193 30 96.7 30 ............................A. ATCTCGCAGATTTGGACAAGGTCACGAATA 2253 30 100.0 30 .............................. CAACTGTGTAACCAGATTTCGCTTTAAAAG 2313 30 96.7 30 ............................A. CAATGTAATGCTCAGGCGATGCCTTATCAT 2373 30 100.0 30 .............................. GGACAAAGATTATGACTGAGAAAGACGAGA 2433 30 100.0 30 .............................. GGATGTGCAATTTGGTCAAGATGTGGGGAG 2493 30 93.3 30 ............................CG AACACGACTTGAACCAAAGTTAGAAAAATA 2553 30 93.3 30 ............................CA ACTAAAAGCTATTTATGGGGGTAAAAATTT 2613 30 96.7 30 .............................G TCATTGGCCGGCCATTCACAACCCCGATAA 2673 30 93.3 31 ............................CC AAAAAATGAGGAAATTGGACAATATCCAACA 2734 30 96.7 30 .............................G TTGAACGAGTTATTCATAAGTGCCCGAAAT 2794 30 93.3 30 ............................AG CGGAAATCTTTTCAAGTGCGTAGGGGATAA 2854 30 100.0 30 .............................. CTCCAAGTAAAGAATAAAACAATATACCGC 2914 30 96.7 30 .............................C AAGGCGATCCACCTCCCGTCACAGTCATTT 2974 30 93.3 30 ...........T.C................ TGCTAAAAGGATTTATGCTTTAAAATACTT 3034 30 86.7 30 .......A.....C...T..........G. TGGCGTACGGATAACGGAAGAAAGCATAAG 3094 30 86.7 30 .......A.........T..........AA ATAACCACGGTTGTGGTAAGTCACTTTTAC 3154 30 80.0 30 .......A.A.....T.T..........GC GTTCAGGTTGAGGAGATGAAGTGATGTGAT 3214 30 70.0 0 ...T...A...T.....T..C...AGCG.. | ========== ====== ====== ====== ============================== =============================== ================== 54 30 95.6 30 GTTCATGGCGGCATACGCCATTTAGAAATT # Left flank : GTGGCGCGTTCAAGCGTGCCATTGAAGCATAG # Right flank : TAAGATAAAAAAACAAATGATCACTGCTTAGTATTCTTTATCTTTAAATTTTAAAGAAGAAAATATATTCTGAGCTCAAGATATTTAGTGGTGAAATTTTTATGCGCGGTTTATACCTCATTACCAATGATGACCCAATCCAATTATTATTAGAAAAATTAGACGCCGCACTCGCAACCCGTCAAATCGCAATTTTACAGTACCGCCGTAAAAAAGTAGACAAAGCCGACCAACCTGCTGAAGTTGAACAGATCAAACAATTATGTGAAAAATATCAGGTTCCTTTTGTCATTAATGATGACCTAAAACTGGCTGCTCAGTTTGGTTTAGGTGTGCATTTAGGTCAAAGCGATGGCGAAATCACCGATGCAAAATCGCAGTTACCAGAAGGTGTTATTATTGGCCGTACTTGCTTAAACTCATTAGAACTTGCCCAAAAAGCTATTGCCGATGGTGCAACTTATGTTGCCTTTGGTGCGGTTTATGCAACTGCCACTAAA # Questionable array : NO Score: 5.42 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.38, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.10,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-20] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //