Array 1 422357-423849 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGESQ010000002.1 Salmonella sp. 3203110320160052 NODE_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 422357 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 422418 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 422479 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 422540 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 422601 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 422662 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 422723 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 422784 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 422845 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 422906 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 422967 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 423028 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 423089 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 423150 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 423211 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 423272 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 423334 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 423395 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 423456 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 423517 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 423578 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 423639 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 423700 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 423761 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 423822 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 439981-441762 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGESQ010000002.1 Salmonella sp. 3203110320160052 NODE_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 439981 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 440042 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 440103 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 440164 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 440226 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 440287 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 440348 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 440409 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 440470 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 440531 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 440592 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 440653 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 440714 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 440775 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 440836 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 440897 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 440958 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 441019 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 441081 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 441184 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 441245 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 441306 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 441367 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 441428 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 441489 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 441550 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 441611 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 441672 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 441733 29 96.6 0 A............................ | A [441759] ========== ====== ====== ====== ============================= ========================================================================== ================== 29 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //