Array 1 156780-156925 **** Predicted by CRISPRDetect 2.4 *** >NZ_JGDT01000017.1 Bacteroides fragilis str. 3-F-2 #6 gbf3F26.contig.16, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ===================================== ================== 156780 24 100.0 37 ........................ AACAAAAATACTAAGTATTTGTTTGATAAGCAAGGAA 156841 24 100.0 37 ........................ GCTTTTTGTGGCTTGAGTTATGTACCTTCATCATGAA 156902 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ===================================== ================== 3 24 100.0 38 ATTCCCAATATATTGTGAATTTGA # Left flank : CGTGTCGGTATGTGCTGTAGCTAATAAAATACCAAAATCATCTTTTTCATCAATCTGCAATAATCTTGCCTGAACGATGCGGTTGTGCCCTTCTGACAGCATGTTGGCAAAAAAAGGAAATAGATAATGGGAAGTATATTCCTGTTGTTGTTTTGTCAATGTCAGGCTTATGGAGGGCTTTGATGGATCATTGAAATATTCGTCATCATAGCGAAATTTATATTCGTTAGAAGATAATTCCGTAATAATGCCTACCCGTTCTTTATTCAAGTATACGACTCCTTGTCTCATAGATATCCCTCCTTATTTTTAATTTTCAGAGAAAGTTCTAATCCTAATACCTCCAATATGGCATAGAGCTTTTGAAAATTAATATTTATTTCTCCATTTTCAATTTTTGTTATAGTATTGATACTGATTTGTGCTAAATCGGCAAGTGTTTGCTGATTTATACCCAACATTTTTCTTCGTTGGCGAATCTGTATTCCAATTTGTTTCAT # Right flank : ATTACGGCTATTTGTACTTTTGATTTTAGAATGACAGAGATTTCTTTTTGTTTGTAGAGTGTTTCTCAATTAACATTGTTAACGCCATTTCTCCGTTATTTTATTCTTGTGTGCAAATAACAAGCCTTTTGCATTGAAAACACTTGCTATTTGCATTTAAAGAACAAGCTTTAACGTAGCGTTAAAACAAAGCTTTGGGCGAGAGAAATCTTGTGCTTTAAAAACACTGTGTTTTAGTTCGTTAAGCACACTTTTTACTTCTTTGTTTCGCTGAATCCCTTTCTGGTCAAAAGCCTGTATATTTGCTTTTTTGTCAACTACAAATAGGGGACTGACACTCTCTGCTACCTTCTTTTCGTCTTGTTTAGCGCCGCTATCAGGTATCTTCCTTTGGCTCCGATGTCGCTCCAGCAAGTGTTGGCAATCAGTTTCCATACCGTCGTTCCCTTCCTCCCATAGTCCGACAGCCTGAGTATGGAGTTTACTTCCCCGGTGTCGGT # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCCCAATATATTGTGAATTTGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 749-1946 **** Predicted by CRISPRDetect 2.4 *** >NZ_JGDT01000171.1 Bacteroides fragilis str. 3-F-2 #6 gbf3F26.contig.172, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 749 47 95.7 30 ...A......A.................................... GATTCGAAGATATGCAAATGTAGCAAGTAT 826 47 100.0 30 ............................................... CCATCGACAGTAGTCATAAATTGTAAGTCA 903 47 100.0 30 ............................................... CCAAAGACGCCAGGTATTCCTTTACCTTTT 980 47 100.0 30 ............................................... CCCTACCGTTGCAATAGCTACAATCATGTC 1057 47 100.0 30 ............................................... TATGCTGTCCTGCTGTACGTGCGGCAATCT 1134 47 100.0 30 ............................................... AGTAGTCATCAATTGAAGATCAGGGCCGGT 1211 47 100.0 30 ............................................... ATAACCACGAGTAAGATATGAATCAAGCAC 1288 47 100.0 30 ............................................... GATATCACCGGTTACTTTCTTAATCAACTT 1365 47 100.0 29 ............................................... TTTCCGGTTGAAATTAGAGCGTGAAAAGT 1441 47 100.0 30 ............................................... CACCAGCCTCAGAACCAAGAGAACCAACGT 1518 47 100.0 29 ............................................... TTACCAATTTGATTAACAACACCGCCGGC 1594 47 100.0 30 ............................................... TGCGTGTGAAGGCAGAAGTATCCACAGGTT 1671 47 100.0 29 ............................................... TTAGAAGAAGCAAGTTGAACATTGCATTT 1747 47 100.0 29 ............................................... TTAAAGAACGAAAAAAACGAGTGGATCAC 1823 47 100.0 30 ............................................... AACACTTTAAAAAAGTACGCAAATGGTTTA 1900 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 16 47 99.7 30 GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC # Left flank : TCCAGGACGAAAATAACAAGGCTTCTGCTTCTAAAAGCCTTGTTATTTGGAGACAAAAGACTTGATTTAACAGGGGGTTAAATCAAGTAATAGGAAGAGAAGAAAAGAAAGGAAGAAAAGAATTGAAGATGAATACAATAGAGAGACAAAGGAGTGTTTACTGGGAAAAGGGATAAGTGCTGGTCCGAAAGGGATAGTTGTGATTAAAGCAAGTATGGGGGCAGGGAATTTTAAAAAGCAAGGTTGGGAATGGAAGCGGGAGGAGCTTACTGTTAAAGACCAAAGGACAAATTACAAAATATTATCCAATTAACAAACCGATAAACAATCTATTAAATGGTTATTCACAATTCGAAACAGCTTCTAATGGTAACTATATTTAAACCGTCTAATCAGATACACTTAGTAGCATACTTTTCAATTACTAAGTAGAGTACTTTTTAATTATTATCTACACCATCATAAACAGCATATACTATCTGATGAAGACAAAGCGATGC # Right flank : TTACTCCGCATAACATAATGTTCTTCAACAAGTTAAGAATAAATTAGAAAAAAGAAAAAGAAGACTGTTTCCAACACAAAATCTCGCATTAATGCGAGATT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.96%AT] # Reference repeat match prediction: F [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.20,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.78 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 13644-13097 **** Predicted by CRISPRDetect 2.4 *** >NZ_JGDT01000063.1 Bacteroides fragilis str. 3-F-2 #6 gbf3F26.contig.63, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 13643 29 100.0 34 ............................. GAACGAAAAGGCGGGCTGGATTTCAGCGGACTTC 13580 29 100.0 36 ............................. GGAAATGGCGGAAGGATTGGCCGTCAGGGTAACTGA 13515 29 100.0 37 ............................. TTAATCATCACATTGATCTTCTTAATCGCTTCATCAG 13449 29 100.0 34 ............................. CCGAGTACTTGTACATCGTACAGTTTCCCTTGCT 13386 29 100.0 34 ............................. ATACACGCCGGTCTTCGGTTCGATGGCGAATACG 13323 29 100.0 36 ............................. TAAATAGCTCGGCAAGTTTTACGATCTGTGTAATTG 13258 29 100.0 37 ............................. GTCCTAAACGAAGGTCAACAAACCAACTTTCATCGTT 13192 29 100.0 37 ............................. TTGTGCAAAATGCAAGATATTACGATGTGCTGCACTG 13126 29 93.1 0 .........................G.C. | A [13102] ========== ====== ====== ====== ============================= ===================================== ================== 9 29 99.2 36 GTATTAATTGTACCTTATGGAATTGAAAT # Left flank : ACCGTTTAAAATGTACTGGTAGATATGTATGTTATTTTTGTTTATGATTTTGGAGAAAAGAGGGTCTCAAAGATGTTGAGATTATGTCGTAGGTATTTGAATTGGATTCAGAATTCTGTATTTGAAGGTGAACTTTCGGAAGTACGTTTAAAAGAGCTATTATTATTAGCAAAAGGGGTTATGAACCCCGAAGAAGATTGCATTATTATTTTTAAAGGGGCTACTCAATGCTCTTTGGAAAAGGAAATAGTGGGCAAAGAACTTGCTAACATTGATAATTTTTTGTAAGACGGTTGTCGAAGTAATTTGTTATTGTGAATTATCAATGGTAAAGTAACGGAAACGCTCTATGACATGTTGATATATAGATGTTTAGTACCTATGTCGCTAACCTATGTTTTTTATATTATTCTTGATCGACACATTATTTCTAAAGAAAAGCAATTTTCTGCAAAAGCATTTGGCTTATTACTAAGTAATTGCGTTGATTGATGGGTAGA # Right flank : AAGGAAGATCTATATTTAAAGGTTGGCTTAAAACTCTATCGGATGAAATTTTTTCTTCCTTGCTAGCAACATCCCCCATTATCCTTTGGGAAATGTTTTTATTTATCCTATTTCCTTTTTATTAGAAAACAATCCTTATATTTGTCCGTGTATTATTAATTTGATGACAAATGACACTTATGAAGACATTGAATTTTATGAAAACGCTATTCTTATTGGTAGCTATAGTAGGCCTAAGCTCTTGTGGTGACAAGTATTATTCAGATGATTATCTACGAAATAGCAATGCAAAGCTCTGTGGCAAAACCTGGGTGAATGATTCGGAGAAGAATGATGTAGACGAGTGGGTTCGGCATACATTGAAGTTTGATGATAACGGCCGGCTGGCAGAGACTTATGCCTATTATCATGTAAATGAAAGTCAGCCTTACCGCACGGAGACCAATAATCTGACCTGGTCGTGGATAGACGATACGATGGAAGGTATTGTTTTTGACTAT # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTAATTGTACCTTATGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 1 499-1696 **** Predicted by CRISPRDetect 2.4 *** >NZ_JGDT01000097.1 Bacteroides fragilis str. 3-F-2 #6 gbf3F26.contig.97, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 499 47 95.7 30 ...A......A.................................... GATTCGAAGATATGCAAATGTAGCAAGTAT 576 47 100.0 30 ............................................... CCATCGACAGTAGTCATAAATTGTAAGTCA 653 47 100.0 30 ............................................... CCAAAGACGCCAGGTATTCCTTTACCTTTT 730 47 100.0 30 ............................................... CCCTACCGTTGCAATAGCTACAATCATGTC 807 47 100.0 30 ............................................... TATGCTGTCCTGCTGTACGTGCGGCAATCT 884 47 100.0 30 ............................................... AGTAGTCATCAATTGAAGATCAGGGCCGGT 961 47 100.0 30 ............................................... ATAACCACGAGTAAGATATGAATCAAGCAC 1038 47 100.0 30 ............................................... GATATCACCGGTTACTTTCTTAATCAACTT 1115 47 100.0 29 ............................................... TTTCCGGTTGAAATTAGAGCGTGAAAAGT 1191 47 100.0 30 ............................................... CACCAGCCTCAGAACCAAGAGAACCAACGT 1268 47 100.0 29 ............................................... TTACCAATTTGATTAACAACACCGCCGGC 1344 47 100.0 30 ............................................... TGCGTGTGAAGGCAGAAGTATCCACAGGTT 1421 47 100.0 29 ............................................... TTAGAAGAAGCAAGTTGAACATTGCATTT 1497 47 100.0 29 ............................................... TTAAAGAACGAAAAAAACGAGTGGATCAC 1573 47 100.0 30 ............................................... AACACTTTAAAAAAGTACGCAAATGGTTTA 1650 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 16 47 99.7 30 GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC # Left flank : AGGGGCGGAAAGAACAAAGCTTTGGCTTCGAAAAGACTTGTTATTTGGAAACAAAAGGCTTGATTTAACAGAGGGTTAAATCAAGTTATAGGAAGAGGAAAAACAAAAGGGGGAAAAGGACTGAGAATGAAGGAAATAGAGAAAAAAGGGGGTATTTTCTGGGAAAAGGGATAAGTGCTGGTCCGAAAGGGATAGTTGTGATTAAAGCAAGTATGGGGGCAGGGAATTTTAAAAAGCAAGGTTGGGAATGGAAGCGGGAGGAGCTTACTGTTAAAGACCAAAGGACAAATTACAAAATATTATCCAATTAACAAACCGATAAACAATCTATTAAATGGTTATTCACAATTCGAAACAGCTTCTAATGGTAACTATATTTAAACCGTCTAATCAGATACACTTAGTAGCATACTTTTCAATTACTAAGTAGAGTACTTTTTAATTATTATCTACACCATCATAAACAGCATATACTATCTGATGAAGACAAAGCGATGCG # Right flank : TTACTCCGCATAACATAATGTTCTTCAACAAGTTAAGAATAAATTAGAAAAAAGAAAAAGAAGACTGTTTCCAACACAAAATCTCGCATTAATGCGAGATTTTGTATTCTAGAACAACTCCAATTGCTGTCCCGGCGTATTGACATCTTGCACTTTCTTTCCATAAAAAAGCTCTATATCTCCAAATTGTTTATCTGTAATACACATGATTCCGACATGCCCAAATTCTGGGAGAAATGATTTAACTCTTTTTATATGTACTGCTGCATTCTCACTACTGCCACAATGACGCACATAAATGGAAAACTGAAACATCGTAAAACCATCCTTTTGTAGATTCTTTCTGAAATC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.96%AT] # Reference repeat match prediction: F [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.20,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.78 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 299-1496 **** Predicted by CRISPRDetect 2.4 *** >NZ_JGDT01000098.1 Bacteroides fragilis str. 3-F-2 #6 gbf3F26.contig.98, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 299 47 95.7 30 ...A......A.................................... GATTCGAAGATATGCAAATGTAGCAAGTAT 376 47 100.0 30 ............................................... CCATCGACAGTAGTCATAAATTGTAAGTCA 453 47 100.0 30 ............................................... CCAAAGACGCCAGGTATTCCTTTACCTTTT 530 47 100.0 30 ............................................... CCCTACCGTTGCAATAGCTACAATCATGTC 607 47 100.0 30 ............................................... TATGCTGTCCTGCTGTACGTGCGGCAATCT 684 47 100.0 30 ............................................... AGTAGTCATCAATTGAAGATCAGGGCCGGT 761 47 100.0 30 ............................................... ATAACCACGAGTAAGATATGAATCAAGCAC 838 47 100.0 30 ............................................... GATATCACCGGTTACTTTCTTAATCAACTT 915 47 100.0 29 ............................................... TTTCCGGTTGAAATTAGAGCGTGAAAAGT 991 47 100.0 30 ............................................... CACCAGCCTCAGAACCAAGAGAACCAACGT 1068 47 100.0 29 ............................................... TTACCAATTTGATTAACAACACCGCCGGC 1144 47 100.0 30 ............................................... TGCGTGTGAAGGCAGAAGTATCCACAGGTT 1221 47 100.0 29 ............................................... TTAGAAGAAGCAAGTTGAACATTGCATTT 1297 47 100.0 29 ............................................... TTAAAGAACGAAAAAAACGAGTGGATCAC 1373 47 100.0 30 ............................................... AACACTTTAAAAAAGTACGCAAATGGTTTA 1450 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 16 47 99.7 30 GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC # Left flank : ATTAAAGCAAGTATGGGGGCAGGGAATTTTAAAAAGCAAGGTTGGGAATGGAAGCGGGAGGAGCTTACTGTTAAAGACCAAAGGACAAATTACAAAATATTATCCAATTAACAAACCGATAAACAATCTATTAAATGGTTATTCACAATTCGAAACAGCTTCTAATGGTAACTATATTTAAACCGTCTAATCAGATACACTTAGTAGCATACTTTTCAATTACTAAGTAGAGTACTTTTTAATTATTATCTACACCATCATAAACAGCATATACTATCTGATGAAGACAAAGCGATGCG # Right flank : CTTACTCCGCATAACATAATGTTCTTCAACAAGTTAAGAATAAATTAGAAAAAAGAAAAAGAAGACTGTTTCCAACACAAAATCTCGCATTAATGCGAGATTTTGTATTCTAGAACAACTCCAATTGCTGTCCCGGCGTATTGACATCTTGCACTTTCTTTCCATAAAAAAGCTCTATATCTCCAAATTGTTTATCTGTAATACACATGATTCCGACATGCCCAAATTCTGGGAGAAATGATTTAACTCTTTTTATATGTACTGCTGCATTCTCACTACTGCCACAATGACGCACATAAATGGAAAACTGAAACATCGTAAAACCATCCTTTTGTAGATTCTTTCTGAAATCGGCATAAGCCTTTTTTTCTTTCTTAGTCTCAGTTGGCAAATCAAAAAGAACAAGCACCCACATAATACGATATTCATTAAAACGATCCATAATCTATCGTTCGGGATAGGAAATTCTCCGAAGCTCTCCATTGAAACATTTATAAAGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.96%AT] # Reference repeat match prediction: F [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.20,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.78 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //