Array 1 239073-240955 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANDW01000022.1 Streptococcus agalactiae LMG 15090 ctg120000851168, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 239073 36 100.0 30 .................................... TTGGAAAGATGGCAGAGGGGTTAACGCAGC 239139 36 100.0 30 .................................... TTTTGAGTTTTCAACTTATAGAGTGTATTT 239205 36 100.0 30 .................................... ATCTGGAAGCGGTCAAGAAAGCCCAGTATG 239271 36 100.0 30 .................................... ACGGCACTTTTAACCGTCTCTCCGCTTCTT 239337 36 100.0 30 .................................... ATGGTCAGAAATCGAAGAAAACGAAGTCGT 239403 36 100.0 30 .................................... AACTAAACAAACGCATTGTGTTTTTAGCTT 239469 36 100.0 30 .................................... CTTAAGCTTGATTATAGTATATCACCATTT 239535 36 100.0 30 .................................... CCTCTATCGAGGTTTCTTACGGGTAGGGTC 239601 36 100.0 30 .................................... GACGAATTTAGATAACAAAAAAGCCACTGT 239667 36 100.0 30 .................................... ATGGTCAGAAATCGAAGAAAACGAAGTCGT 239733 36 100.0 29 .................................... CTTATGGGAGTTCTTGCAATATTAGTTGT 239798 36 100.0 30 .................................... GTAACCCGTCTTTTCCATCAGTCCCATCTT 239864 36 100.0 30 .................................... TTGGAAAAAACACGAAAGTGATATTACTTT 239930 36 100.0 30 .................................... TAAGAATTTTAGATACTCTACTTGAATGCT 239996 36 100.0 30 .................................... AAATTGCTCTATCAGTCAATAAAGCAAGAT 240062 36 100.0 30 .................................... TCATATTGAGTGGTTGTTTAATTAAATTGA 240128 36 100.0 30 .................................... TGAATTCCACGCCACCAAGTAAACCTGTGA 240194 36 100.0 30 .................................... ACAAGAAACAAACAGCCTTGATGACTTAAT 240260 36 100.0 30 .................................... GGGTCCAAATCAGCAATCTATGCTAAAAAT 240326 36 100.0 30 .................................... CAACCCTATGTTTGATAATATTTTAGACGT 240392 36 100.0 30 .................................... AAGTGAAGTTGAATTTTATTTGAGATACTA 240458 36 100.0 30 .................................... TAATACTTTTACAATATGTGTTTTCACTAC 240524 36 100.0 30 .................................... AAGTGCCACAGTTTGTGGCTGATTGGATTG 240590 36 100.0 30 .................................... CATTCAAGGACTACCCTCAACAGTAACTCT 240656 36 100.0 30 .................................... ATAATATATTATATAATAAATATAGAAATA 240722 36 100.0 30 .................................... TTCTATCTTCTGAAGATATTTCACAAGTGA 240788 36 100.0 30 .................................... TCAGCGAGATGCTCTAAGTAAGCATGTTGA 240854 36 100.0 30 .................................... TCTTCTTTTTAATTCTTCTAACACTCCATC 240920 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 29 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : ACGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTACGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTGGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGA # Right flank : CATCTTCTTTTGACCTAACAAAAGGATATGTGTTTTAGAGCTGTGCTGTTATTATGCTAGGACATCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCAATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCTAGGTTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTTCTTTGTCATTAATACTTGCAAGCTTACAAGGAAAGCAGTGGAGAACCTATCCATAATCAACTAACAGCTATG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 167312-166752 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANDW01000003.1 Streptococcus agalactiae LMG 15090 ctg120000851149, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 167311 32 100.0 34 ................................ ATAGTCCCACATATTGCTATGAAAAAACGGAAAA 167245 32 100.0 35 ................................ TACTATATTTCCATTTATGTTCTGTCTGAAAAGAC 167178 32 100.0 34 ................................ TAAGTCTCGCTGTTACGCTTGACGCAGAGCAAAC 167112 32 100.0 34 ................................ TATTTTATATTAAAAATAAGACTACCATAATTAT 167046 32 100.0 34 ................................ AGGCAAAAGTCAACGAGCTACTCAAACAGCCAAA 166980 32 100.0 35 ................................ TAGCTGATAGCCTGCAATATACAACCATCCGTTTT 166913 32 100.0 34 ................................ ATCATATCTCTATAATTTCCTTTCATATCAACGC 166847 32 100.0 33 ................................ TAATAATGATTATTTTTTTATTAATTCATTATC 166782 31 78.1 0 A....-.............T..A.T..C..C. | ========== ====== ====== ====== ================================ =================================== ================== 9 32 97.6 34 GTCGCACCCTTTGCGGGTGCGTGGATTGAAAT # Left flank : CTAAAGCAATACGTGGTGATTTGGAATCCTATCCACCATTTTTAATCTAGGAGTAAAATTATGATGGTTTTAGTAACCTATGATGTCAATACGAAGACTGTAGCAGGTAGGAGACGCCTTCGTCACGTCGCAAAACTTTGTGTTGATTATGGTCAACGTGTACAAAATTCTGTTTTTGAGTGTTCAGTGACTCCAGCTGAGTTTGTGGAGATAAAAAACGAGTTGCTGACAATCATCGACCAGAAATCAGATAGTATCCGATTTTATTTACTTGGTAAAAATTGGCAAAATCGTGTGGAAACTATTGGCAAAAATGATAGTTATGATCCTGATATAGGGGTATTACTTCTATAAACATTTATATGTGAATTCGGGTCACACATGAAAAAGCGGAGTATTCGCGCTAAAAAAAAGAAAATAGTAGTCAAAATCTAGTTTTTATTGAACCAACTTGTTTAATAAATTCTTGGTTTTAGTTATAAACGGTGCAATCGCGCACT # Right flank : ATTTTAAATCTTTCAAATTATGCTATTAAAATTGTCTAACTTTTAACAGAGATGCGATTAAATTGTATTAATCCCTAAAAAGATAAATTGCTAGTTCTTATGCTATAATAACTCTATCAATGTCAAAGGAGTTTTTATGTCAAAGGTAAGGTATGGTGTTGTGTCAACGGCAAAGGTGGCGCCTCGTTTTATTGAAGGAGTCCGCTTAGCAGGAAATGGTGAAGTTGTGGCTGTATCGAGTCGAACTCTTGAGTCTGCGCAAGCTTTTGCCAACAAATATCATCTCCCAAAGGCTTACGATAAGTTAGAGGATATGTTAGCAGATGAGTCAATTGATGTGATTTATGTGGCAACAATTAATCAAGACCATTATAAAGTTGCTAAAGCAGCTCTGTTAGCGGGAAAACATGTGTTGGTAGAAAAGCCTTTCACCTTGACTTACGACCAAGCGAATGAATTATTCGCTTTGGCAGAAAGTTGTAATCTGTTTTTGATGGAGG # Questionable array : NO Score: 9.14 # Score Detail : 1:0, 2:3, 3:3, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTTTGCGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.50,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.01,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //