Array 1 327037-326709 **** Predicted by CRISPRDetect 2.4 *** >NZ_AKXC02000057.1 Leptospira interrogans serovar Grippotyphosa str. 2006006986 ctg7180000004636, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 327036 37 100.0 36 ..................................... AAAAGAAAACTAACAACTGGTGGATTTTAGTTCTTC 326963 37 100.0 37 ..................................... ATAGGATTGTTGCAATCAATGCAGTTTGTGACGACGG 326889 37 100.0 35 ..................................... GACTATCTCAAGTTGCAAAGGATGAGTTTTTTGAA 326817 37 100.0 35 ..................................... GACTATCTCAAGTTGCAAAGGATGAGTTTTTTGAA 326745 37 97.3 0 ....................................C | ========== ====== ====== ====== ===================================== ===================================== ================== 5 37 99.5 36 CTGAATATAACTTTGATGCCGTTAGGCGTTGAGCACA # Left flank : AATTGGCAAAAGTCACCGAAGAAGAAGACAATATATTTTATCTGACTCTTTGCACCAAGTGTGCTTCGGGCGCCCATACCCAAGAAAAAAAATCCGCGTGGCCAGAAGCTCCAAAAACATTAAAAATTCTATAATTCAAGTATCTCTTCAGGGCATAGACATAATTCTACTTAAAAAGCAAAACTAAATCTTTGAATCTATATTTAATTCCAAGACATATCCAATCTTTACTCGGATTCAGAAATAGACCCTATCTAATTGATTGCCCAACGCTCGTTTTTCTTTCTTGTGAAAATTCCAGCTAAATTTATAATCGGTGACGAGCTTAAACATACTTGAATCTTAATATTTGAAACAAAATGATCCTTGGAAACAAAATATGCACTTCTGAAAAAACCGAACATGAAAAATAACGATAAAAAACGATATACTTGTTCTCCTCCTTTGAAAACACTCATATCCACAATTTATGCTTATAAAAGCCATTTAAATAAAATGCT # Right flank : TAGAGTGGCGTGAATTTTTGCATGAGTTGACCCTTTAACCTAGTGACGAATTATTGGACACATTTTTACGCAGCATTTACTTCAAATTGCACAGGACTCACAAAGTCTAATGACGAATGAGATCTGTGTCTATTATAATAAACTTCTATATGATCAAAAAGTAATTCTTCGGCTTCTTGAATTTTATAAAAGTAATTATATTCCATTTCTCTTTTCAGAGAACCAAAGAAGGACTCGGCAACTGCGTTGTCCCAACAATTTCCCTTTCTACTATTACTCCTTCTGAGTTTATTATTTAACAGATACCTTCGAGTTTCGTACGAACAATAATTGGATCCTCGATCCGAATGAAAAACTAAACCCTTAGGAGGATTTCTACATTCGATTGCTTTGGAAAGAGCGGTGCACACTAACTTAGAATCATTAGAATTTGAAATCGACCAACCCACTACTTTTCGAGAATAAAGATCCAGTATTACACAAAGATAAATCCACCCGAA # Questionable array : NO Score: 2.83 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGAATATAACTTTGATGCCGTTAGGCGTTGAGCACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.00,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 1 384585-384344 **** Predicted by CRISPRDetect 2.4 *** >NZ_AKXC02000051.1 Leptospira interrogans serovar Grippotyphosa str. 2006006986 ctg7180000004653, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================ ================== 384584 28 100.0 44 ............................ GATTGAAACAAATTTCCCACGCGTGGGAAATTTGGCTCATTCGA 384512 28 100.0 43 ............................ CATTGAAACAAATGTAAACTCAGATTTACATTTGATTGAAGCG 384441 28 96.4 43 ......................A..... AATTGAAATGTCGGTAAAGTGGCCAAAGGCGAAATGGAAGTTC 384370 27 75.0 0 ....T..C......C....C.T..-..T | ========== ====== ====== ====== ============================ ============================================ ================== 4 28 92.8 44 GTTTCTTTCTCTTATTCAAGAGGAAGTG # Left flank : ATAGAGAACTTCCCCAATTGTTCTTAAAACTAAAAACTTTGTAAATGTTTACTGTTAAGTCGGATTGTTTGTTGAGTTTAGATTCAATTGTTTGTGAATTGATCTCTTTTAAAATCTCTAAAAGTTGTACAAACCAAAACACGTTTGTTAAAAATTTTAATTTGAGATGACTTCTAAAAAATTCTTTTGTTCCTTTTCCAAAAATTTCAGTTAGACGAACTTTGCCTCATGGATAGTCAGTCTTTCATCAATCTATCCTAAAACCCTGTTATAAGTTTGTCTTTGATAAGCCGATCTTTTAGAATGAATTGTTTTTTGCGAACCTGTTTCTCCCGGTAAATTACGGACCTTTCGCGCTCTTGCATGGATTCGTTGTTTGGCGATGTAACGGTTCCGCTTAACAATTGTGTAATATGGTAAAAATAGGTTCGCGATTATTATGTTTAGAAAGCTTAATAGAGCATTTTATAATACATTATTTTCAACCCTATTGAGCCGCC # Right flank : CCTACAATTTCAGAATTTGTTCGTAAAATTGTGATTTGCAGTAGTTCCCACATCATTTTATAGAGGCTTTGTGGTAGTTCCCACAAATCAGAGCTTGTCCCAAAACCTCAAAGAATTTTACGCAATAATTCTTTAGAAATTTTTAATAAAATGCAGTAGCTCCTAGAGATAAGTTCTCATTTGGCAATTTGCGAGCTTTCGAGTAGTTCTAATGTCGTTCCATTTTCGTAGTAGTTCCCACAAATTAAGTCACATTGTGAATATAGGTTTTAAATTCAATTTTTGTAAAGTTTTTCGAACTAAAAAGTTTTACTGATTTTTATAAAATTAAATACCGTGAATTTTTATCCTAAAACCCTGTTATACGGTTTTGAATGGATCTTATTCTAGAAAAATCATACATCTAAATCACGTTTACTTTCATTTAAATACAATGTGTATTCTTTAGTGATCGTTACCCAGTGCTAAATAATAAAGAACCCAATCTTAATCATTTATAC # Questionable array : NO Score: 2.50 # Score Detail : 1:0, 2:0, 3:0, 4:0.64, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTTTCTCTTATTCAAGAGGAAGTG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.70,-3.80] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //