Array 1 71095-70731 **** Predicted by CRISPRDetect 2.4 *** >NZ_PUFN01000018.1 Companilactobacillus farciminis strain ATCC 29644 261, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 71094 36 100.0 30 .................................... TATTTAACACTCACAACAGTAACCCAAGTA 71028 36 100.0 30 .................................... TAGCCGAAATTACCGCTTGGTTGAAAGCTC 70962 36 100.0 30 .................................... ATATTTGATGCGTATTCAACGTTTAGTTGA 70896 36 100.0 30 .................................... TACCTGCGAACATTAGTCTAGTGCCCCCCC 70830 36 100.0 27 .................................... AATAATTATTTCTAAAAGTATCAAGTA 70767 35 86.1 0 ...........CA........C.-...C........ | CT [70757] ========== ====== ====== ====== ==================================== ============================== ================== 6 36 97.7 30 GTTTTTGTACCTTAAAGAATCTAGAAATAGTAAAAC # Left flank : AATTTCGTTTGGAAAATACCGGTTTACCAGTTTGGTTGATACTTTATAACTTAGATAGTTTTATCGCTCCAAGAGATATCGACTATTTATTGATTAAAGTTAAGGAGCTAATGAAAGAGTATGATTTGAAATTAATTTATTTGGGTAATAGTTTGAATAATATTCCACTAGATTCAAGTGAAATTGATGGTGTAGTGTTAGCGGCTGATGAATTTAACCAGTTACTGCCAATCGATGAATTGATGGAATCTATCAAGCTGCATTATCCTAATAACTTTAATATGTCCGAGAATGAGATTACTGATTCATTAAAAAGAATTATTCCGTTTATAGGAATTAAGGAAAAAGTGTTCATATCTAATAAAGATTTGGTATTATTAAAGGTAGTGAACGATATTTTAGGATATGAGACGTCGTATGATCTAAAATCTCAATCACTAACGGGTGCAGAAACCAAATTTTTGGAAGATTAATTGACGAATTAAGATTTTGAATTTGAG # Right flank : CCAAAGAAGACTAGATCATGGTGGAATCTAGTCTTTTTATTTTTGCAAAAGTGTCATTAAATTTAATAATATTACATTTTTTCTAATTAATTTTAACTTTAACCATAAATACCTATTGCCCAAATTAATATTCTCGTTTATGATAGTCTCAAAACTTTCCAAGGAAGAGGGATCACTATGAAGGCAATTTTGACAGTAATTGGTCATGATCACGTTGGTATCGTGGCTAAAGTTTCAACTAAGTTGGCTGAATTGAACGTTAATATTATTGATATTTCGCAAACTTTGATGCACGAGAATTTTACAATGATGATGATGGTAACGCTCGATAACTCAACTCAATTTGACACGGTACAACAAGAGTTAGCTGGTCTTGGTCAAGAAACCGGTTTGGATATTCGCATTCAACGTCAAGAAATTTTCGATGCGATTCAAAAACTTTAGGGGGATCAATGATGGAAACTAATTCGATTTTAGAAACAATCCAGATGGTCTCTGAA # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACCTTAAAGAATCTAGAAATAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 39439-38808 **** Predicted by CRISPRDetect 2.4 *** >NZ_PUFN01000029.1 Companilactobacillus farciminis strain ATCC 29644 264, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================== ================== 39438 37 97.3 29 ....................................G CGAGCAGCCTTTTCGAATTCATAAAGTTA 39372 37 100.0 29 ..................................... ACTGATTGCTTGGCTTTCTCATCGGTTGC 39306 37 100.0 29 ..................................... GGAATACCATACAAATTGGCGTAATAGCG 39240 37 100.0 29 ..................................... TGTGTATCATCAACCAAACCAATTGCTAA 39174 37 100.0 29 ..................................... CGTCAAGGTCAAGTTCCTTCTTGATATCC 39108 37 97.3 29 ..............C...................... AGTGGAATCATTTCTTCAATTCCTTCTAA 39042 37 97.3 30 .....................T............... TATCCTGAATTGCTTTGAAAATACTTATCC 38975 37 97.3 29 .....................T............... AATAATTACACCGGCATGCGTGAATCCGT 38909 37 83.8 29 ...........T......C..T.......G.T..T.. AGCTACAGTAAGGACAAAGATACAGTTAA 38843 36 81.1 0 ...C........C.C..........T-.C......T. | ========== ====== ====== ====== ===================================== ============================== ================== 10 37 95.4 29 GTTTTAGAAGTATGTCTTTCTATTTACTTAAGAACCT # Left flank : AATCTCAGTTCATTCAATCTCAATGCAAGTAGTCAAATGAGAATTATTTTAAAAAAGATAATCGAGGATTCACAAATAATGCTTAACGAAATTGAAAAAGTTAATGCCGATTTAAATAGCGTCGTTTTTGACTCCATTACTAGATATTCATTGCCCTTAACCCTTGATATGTATGCCAATTACGAGAAACTACTAAAATCAAAGGACATCAAAATAGATTTTAGTAGTTGGGCTAATTACTGTGATAAAATTATGGATGTAATCAGTTTTTATTCTGATTTCACTAATAAAAAAATGCTTATTTTTAACAACATTGGTCGCCTATTGAACGTTAATCAGTTAAATGAGATACATGCTTATCTAAAATCCGTTGATTTAAAGCTAGTTTCTTTAGAATCTTACCCTATGATTTTTAAGGAGGAAAAACTAAATGCTAAAGTCTATTCAATCGATAATGATCATGTTAGGTTTGATTATTAGAAGTTGATTAGAAAACAACG # Right flank : GCTATACTTATCCTTGTTAAGAGATTCAAATCAATAAATCATTTTTAGTATGCTTACAAGTACGTCATCTCAATTACTTGCCTTAGAAGTAAATCATCTCAAACAAAAAGCTCTAGTACAGAATCCCAAAAGATTCCAATACTAGAGCTTTTCATTTTTTTATTTCAAACTCTTCATAACATAATCACCCAAAGTCCGGACACGTTTCAAATCGTCTTCGTCTGGATCTTGATCAATCTTCACGGAGTCAGCGACTTGTTCGCCGTTACTGGAATTCAGTCGCATCGTGAAATAATCTACCGCACGACCAAAGTGAATGTGTCCTTTGGAGCTTGATCCTAACACGGTAAACTTAGTTCTTTCCAAGTCAACATCGGCCAAATCTTCATAAAAATCTTGAGCTTCTTCTGGTACTTCGCCGTCATTATAAGTGTATGTGTCAACAATTACAGCATCGTATTCAGAAAGTTCATAAGCATCGGTATCGATTATTTGTTCTA # Questionable array : NO Score: 2.72 # Score Detail : 1:0, 2:0, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAAGTATGTCTTTCTATTTACTTAAGAACCT # Alternate repeat : GTTTTAGAAGTATGTCTTTCTTTTTACTTAAGAACCT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.40,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //