Array 1 88334-90436 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXTF01000003.1 Salmonella enterica strain BCW_3391 NODE_3_length_213629_cov_3.04401, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 88334 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 88395 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 88456 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 88517 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 88578 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 88639 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 88700 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 88761 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 88822 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 88883 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 88944 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 89005 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 89066 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 89127 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 89188 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 89249 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 89310 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 89371 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 89432 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 89493 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 89554 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 89615 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 89676 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 89737 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 89798 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 89859 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 89921 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 89982 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 90043 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 90104 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 90165 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 90226 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 90287 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 90348 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 90409 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 35 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 106569-107373 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXTF01000003.1 Salmonella enterica strain BCW_3391 NODE_3_length_213629_cov_3.04401, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 106569 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 106630 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 106691 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 106752 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 106813 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 106875 29 100.0 32 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATT 106936 29 65.5 13 ..............GA..C.TTCC.G.GC ACGTTACTCGATC Deletion [106978] 106978 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 107039 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 107100 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 107161 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 107222 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 107283 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 107344 29 96.6 0 A............................ | A [107370] ========== ====== ====== ====== ============================= ================================= ================== 14 29 97.0 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //