Array 1 493740-492384 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP028922.1 Paenibacillus sp. CAA11 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 493739 32 100.0 33 ................................ TGTGAAGGTTAATAAAACAGGTTGTAGTACTTC 493674 32 100.0 34 ................................ TGAACAACAACATTCATCCCCACACTTGATGATG 493608 32 100.0 34 ................................ ACCAACTAAAATATCCTCATAATATACTTTCACA 493542 32 100.0 35 ................................ CCTGGTCAGATGTAAACATCAAGCGGACAACGGCA 493475 32 100.0 33 ................................ TGGTAAGGTTACCGACAATCGCTTTGTAGTACC 493410 32 100.0 33 ................................ AATAAGCTGCTTCAGTTTTTGGCTTATCCTTTG 493345 32 100.0 34 ................................ TGGCGTCGCATGACGGTGGTCGACCACATGCGGC 493279 32 100.0 35 ................................ AAAGCAGACGGTGATAAGGCTGTAGTGATAAGGAA 493212 32 100.0 35 ................................ TTAGCCACCCCTCAAAAGAAGGGAAGGAACCACCT 493145 32 100.0 35 ................................ ATGCCAACCTCTTAGCTTTGCCATAGCTCTAGCTT 493078 32 100.0 35 ................................ CAGTCATTGAGAGTAAGCTTGAGACGCTAGATCAA 493011 32 100.0 34 ................................ CGCAAAAGGATGGAGCCGAACTGTCAGACGAGGA 492945 32 100.0 35 ................................ ATTTGTTTTGGCATACTCCAGCAATTCAGCCTTTG 492878 32 100.0 35 ................................ CATCAAACGAATCTTATGAAAAGGTTGTCTGTGAC 492811 32 100.0 35 ................................ ACCAGCTTAATGGTGGGTACTGGATCGCATAGATG 492744 32 100.0 35 ................................ CTTCACAGAACAACTTTCCACTGACGAGAGAAGCT 492677 32 96.9 35 .......................A........ TCGCTAGATACTATTACCTGTCCTTTGTAGTCCAT 492610 31 90.6 33 ..-..............G....A......... TGATTTTGGTTATCTTTTAACTTATCAGTTGTT 492546 32 93.8 34 ...........C...................C ACCAAACCCAATCCGTTCGGAGCAGCTGGTGGCT 492480 32 87.5 33 ...........CG.............CA.... ATTTCTATTGAAACGGTGATCGTAGCTGGTCTG 492415 31 75.0 0 ..AC..T...C.G..........-.....T.G | A [492398] ========== ====== ====== ====== ================================ =================================== ================== 21 32 97.3 34 GTCGCACCCTATATGGGTGCGTGGATTGAAAT # Left flank : CCTTTACGGCCTGCAAGTGCTCTATGACTGTCTGAATAGAGCCATCCTTCTGCCTGATATGAGCTATGTACTTCATAACAAGCCTCCTGAACTAAGACTAAGTGATCAGTAAAATAGACGCTGATAAGGTGAATAGTCTTATTTAGTTGTTCGACAAGAACCGAGCATTTCCTTCCAAACTTTTCATTTAAAAGGAAAAAAACGACTAATTTCAACGAATTCTAGGCTGCTTTAAACGACTGACAGAAAAACTACTTGGCATAATTTGGGGAATAGGTTATTTTAAACTCAGAAACCAAGCATGCATGGGAGGAAGAAGTGCGAATGTGAAGCTCCCATAAAAAGCCCAGGGCTTTCGCACCTCAGAATTTGTCGAAATGAGTGGAGATTTACTCAGTCTGCAAAAAGTCAAGACTGAATTAAGACTCTTTTCGCATTGAAAAACATGAAGATGTATGGAGTTAATGCTGCAATGAGATTGATTCCTATGCATTTTCGCT # Right flank : TCGGCAACCATAGCCCCTAGGAATGTTAGCGGTCAGCGTCGCACCCCACAAGGGCGCGCAAATACGATAAAGGAGAACCCAATATGCAACCCGTACTAAACCATTCATGGAATTTAACTGAAACAGAAGCCATCGAGCTACAGCAGGAATTAGCAAGACAGGTTGTCAAAGAGGATTGTTACAGCAGCATTCAATATGTAGCTGGAGTAGATGTGGCTTACAGTGAGCACAGCGATAAACTTATCGCCGCTGTTGTGATTCTTGAATCGGATACGCTGAATTTGGTTGAATCGATCGTGGTAGAGGATCATGTGCAATTTCCTTATATCCCAGGTCTATTCTCCTTCCGGGAGCTGCCGCCCATTGTAAAAGCCTTCGATCAACTAAAAAATACGCCCCAGCTCGTTGTCTGCGACGGCCAGGGAATTGCCCATCCCAGACGGTTTGGATTAGCAAGCCATTTGGGGCTGCTCTTTGATGTGCCCGCGATAGGATGCGGA # Questionable array : NO Score: 9.12 # Score Detail : 1:0, 2:3, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTATATGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [19-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 502300-504344 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP028922.1 Paenibacillus sp. CAA11 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 502300 33 100.0 36 ................................. TAAATCAATTATAACTCTGTCTTTTGATTTTTACAA 502369 33 97.0 32 ................................T GGAACAGTATTTACCTGGTAGTTAAAACTCCG 502434 33 97.0 36 ................................C ATCTTAACGGATAATTACCACCCTGCACATTTAAAA 502503 33 97.0 37 ................................T AATCCAATATTTATAAAGAACCATCGAAGGTAAAACG 502573 33 100.0 34 ................................. ATCTGATAATCTCCAGGCTTCAAATTATCAACAT 502640 33 97.0 34 ................................T TTAAAAACTTTTTGCACAAGAAACAAATCATCCA 502707 33 100.0 32 ................................. TATAATCCGCCAGAATTCATAATGAAATACAG 502772 33 97.0 35 ................................T GGAACAGTATTTACCTGGTAGTTAAAACTCCGAAC 502840 33 100.0 36 ................................. GATCATAAAATTTGAGATCAAAATCCATAGGTAAAC 502909 33 100.0 36 ................................. ATCCGTGCTGGCATATCCAAATTCGCACAATAAACA 502978 33 100.0 35 ................................. CCTTTAATGTCATAAATTATAGGTCGATCATCATA 503046 33 97.0 33 ................................C GCAAAAATCCTAAACCCAATGCGCCAATAAACT 503112 33 97.0 34 ................................T TTAAAAACTTTTTGCACAAGAAACAAATCATCCA 503179 33 97.0 36 ................................T ATTAAGGAGGGGTAGTATGTCCTATCAAGCAAAAAC 503248 33 97.0 34 ................................C CCCTATTATCGACCTCATAAATGAAGCCCCCGGA 503315 33 100.0 33 ................................. TTGAAAGGTTCTCCAGCAGCCGCCCGATCCAAT 503381 33 90.9 34 ..........AC....................G TTTTATTTTCTTGGACAATATGCGAATAAGCTGC 503448 33 90.9 34 ..........AC....................C TCCTCCCCATCTCACATATATCCTGTATATTACA 503515 33 93.9 33 ..........AC..................... TATTTCCGGGTGCAGGAATCCAACAGGGATACC 503581 33 93.9 34 ..........AC..................... TAATTCGCTTTATGAGCTCAGAAGGGTTAACAGC 503648 33 93.9 34 ..........AC..................... TAAGCGTCGTGGTGAACCTTGAAAGGATAAAGGT 503715 33 90.9 33 ..........AC....................T TACCTCTGAATCTATAATCTCTCATATCTTGTA 503781 33 90.9 35 ..........AC....................C TTTTCCTGCATCGATCTCCGCCTCCAATATCCGTT 503849 33 93.9 34 ..........AC..................... GAATTGACGCATCATATGGCACACAATCTACAAC 503916 33 90.9 34 ..........AC....................C CTTTTTGTTTGGCGTTAACATGGCATACAAAAAT 503983 33 93.9 32 ..........AC..................... TCATCATTGGATCGCATTATTGAAGCTTTAAA 504048 33 90.9 35 ..........AC....................T TTGGGCTGAGGGCTTAACGCCGGAAGAGATCGCAG 504116 33 90.9 33 ..........AC.........A........... AGTAAAGCACGTTCCTTATCTCCCGGCTTAATG 504182 33 93.9 33 ..........AC..................... GCCGGGAGATAAGGTGGTAATCACCGATGCAAT 504248 33 90.9 31 ..........AT....................T ATGGTGTAGGTCGCGACGTCGGATGACTCAC 504312 33 78.8 0 ......T...ACAC.........C......T.. | ========== ====== ====== ====== ================================= ===================================== ================== 31 33 94.9 34 GTCGCACCCCGAGTGGGTGCGTGGATTGAAATA # Left flank : CTTGTGGAAGTAGGTGTATCGCGTGCTGGTGCTTATAACCTATGATGTCAAAACCTCAGACCGTGAAGGAAGAAGACGGCTGTCTAAGGTTGCTAAGAAGTGCATGGATTACGGACAAAGAGTACAAAACTCTGTCTTCGAGTGCATTCTAGACTCTACTCAGTTCCGACGCCTGAAATATGAATTAGAAGAGCTGATCGATGAGACTGAAGACAGCTTGCGTTTCTATAACTTAGGGGATAACTATAAAAAGAAGGTAGATCATGTCGGAGCTAAGCCAGCTTATGATATGGAGGGGCCGCTCATTCTCTGAAGTGAAGTGCGAATGTGAAGCTCCCATAAAAATCCCGGGGCTTTCGCACCTCAGTTTTTGTCGAAATGCGCAGAATGGCATTCGATTTGCCCAAAGTCAAGATTGGATTAAGACTGTTTTAACATTGGAAATTGTGAAAAGGCATGGAATTGATGCCGAAATGGGATTAATTCTGTGTATTTTCGCT # Right flank : AATCCAAAAATAACAAATCTCTATTTACTAGTATTTTTTATCATATATTCACTTCGTTGAAAGAGGTACAATACGATTTGTTATTTATAGGTAAAATGGATTAAAGTACAATAAATGCTATTTATATCTGATTGTATACTTTGGCAAATGTATGCTGCCTGGTGGTTAATGTAATTAGGAGGTTGAGAAGAGTGGACTTTATTGTTGAGACAAATAAGCTGCATAAGAAATACGGGGTGTCGATAGCTGTAGACGATATTTCCTTACATGTGCCGCGGGGGAGTATTTATGGTTTCCTTGGTGAAAATGGAGCTGGCAAGACGACTACCATCCGCATGCTGATGAGGCTGATTGAGCCAACAAGCGGGGAGGTTTTTTTATTTGGTGAGCCGCTGGAGAAGAACTATCCGTCTATCTTTTCTAAGATTGGCACGATCATCGAAACTCCTGGCTTATATGACAACTTGAGTGCACGCGATAATCTGAGAATCTGCTGTACG # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.30, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCGAGTGGGTGCGTGGATTGAAATA # Alternate repeat : GTCGCACCCCACGTGGGTGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTGCGTGGGTGCGTGGATTGAAACA with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.20,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,1.01 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 2002469-2000500 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP028922.1 Paenibacillus sp. CAA11 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 2002468 32 100.0 36 ................................ TCTGATCAGGGTGATGCTGCTACGCCTGATGCTTTA 2002400 32 100.0 37 ................................ TGATCGATTCCAAATCTACTTTTTAAACCAGGACTCC 2002331 32 100.0 35 ................................ TACAACATGATTTTATGATTCGTAAAGTGTTGTTT 2002264 32 100.0 35 ................................ TGCATTTTTTGAGTACGGAGATTTACTCCCATAAA 2002197 32 100.0 34 ................................ ATTTGAAGGTGGTTTGGTATTGTGATTAATTATA 2002131 32 100.0 35 ................................ ACCGCAATTACATAAAATTTATACGTATTGCCATT 2002064 32 100.0 36 ................................ CCTCCTTCAAGATCAACTCAGCTACCCCTAACTTTT 2001996 32 100.0 35 ................................ CGGCTACCGAGCGTCAAGAAGGCGGAGACTTTTGC 2001929 32 100.0 32 ................................ AGCATGATTAGGACAGCACGACATTAACCATT 2001865 32 100.0 35 ................................ CTCTAGTTGCTCCCAGCTTCTACCCTTACTCTCAT 2001798 32 100.0 36 ................................ AATCTCTGTCACATATGAAGATGTCGCACTGATCTG 2001730 32 100.0 34 ................................ CTTCCTGATCGGGGCGGATCGGAACAACCTTGTT 2001664 32 100.0 34 ................................ TCTGCTGCGATGTTAATAACATCGTTTTTGTACT 2001598 32 100.0 35 ................................ ATACCATCGACTTTCATATTGTCCAACCAGTTCAC 2001531 32 100.0 35 ................................ ATTTTCACGCCACAGGAACACGTTGGACGCTTTTC 2001464 32 100.0 33 ................................ TGCGGTAAGTGCTTCGAGTTGGGCGCGTTTGAC 2001399 32 96.9 38 ............G................... ACCAAGTGTTCATCTGCCCATTACTGAGCAGAGCCCCA 2001329 32 96.9 33 ............G................... TTTCCTGGCGCCAGCTGGCTGAGACCGTGGCAA 2001264 32 96.9 35 ............G................... ATCGATGAATATCACAATGTACGGCAGAAGATCCT 2001197 32 100.0 33 ................................ TATCCGAGGATTACACTGCGCTTAAAGCCCTGG 2001132 32 100.0 35 ................................ CGTCAACATCCTAGGTGAAGCTGCTTCTCATGAAC 2001065 32 96.9 34 ....................A........... CAAATGAGGACTTGATCCAGGCATACTCCAAAAA 2000999 32 100.0 35 ................................ ACCACGCATAACGGATGTGAGGAATTCCAGTACTT 2000932 32 100.0 36 ................................ AGGATCTTGGACAGTTGGAAGATAAGCGCATGTACG 2000864 32 100.0 34 ................................ ATGATTCCCGTAACATAGACAGGGCCTCGAGTAA 2000798 32 100.0 35 ................................ TTGATAATGGTAAGCACGGAGCTTGAAGTCCATGG 2000731 32 100.0 34 ................................ CGGTAAGAACTACACGTTCGGATTTGTTGGTGGC 2000665 32 100.0 35 ................................ ATCACATTTAAAACTCGCCATCCAGTCAGCTTTCC 2000598 32 100.0 35 ................................ TAAAATAATTGACACCGGAGATGTGTCCGCGATCA 2000531 32 93.8 0 ............G...............T... | ========== ====== ====== ====== ================================ ====================================== ================== 30 32 99.4 35 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : GTCAACTTGCCTCATCTTTTTCTTTCCTCCAATCATCATGTTTTCATTCACATTAAGACTTTAGGAGTAACAAAAACCGTCAATTATTTACACATTCGACATTTTCCAAAACTATCCTTCAAGTTACTTAACAAACATATAAAAAAGTTCTCTTTCTAATACAACAGATGAACGAGGTGCATTTTAGCCTAGCAGCCCTTGTAACGCCGGATGAGACAATAGAAGATACTAAAAGAGAGCCCATCCTGGACTCGATTGCTTATATTCCGCTTATGTACATCATGTCTTAGCAACGTAGAAAGCCTATCCTTTGCCCGCTGGTGCGAATGGGAAGCTAACATAAAATCCCTAGGGGATTCGCACCTCAAATTTTGTCGAAATAAATGAAGAATGAGGAGTTTAATGCAAATTATAGCTTCTTGGAAGCTAATCATTTATGATAAATGAAGAAAATAACTTTAATTCCTGTAAATATGGGACGAAAAAGAGTGATTTTCGCT # Right flank : TCCAAGAGATTGCAATGGGAGTTTAAACAGCAAACTGTCGCTTTATACAACATTCTCAGCTTTAAGCCACATCTTGAAGAACCACTCCTAGAGTATAAAAGAGCAATTGAAAGTCTATCTGACAATGTTCCGTATAAGCAAGACATAACCAAATACCATTATGAGCTCACTGTAGTTCCATGGATACTTGTTAAAGACCAAGTCGTAAATACTTCATTAATCCCGAGCACTCGATCTTCAAGCACGTTTTATATATGGGTAGCCGATCTCTTCCAGATCATCTTCAATATCTGCTATCTCCAGTTCGTTGTTAAGCAGCTTTAGCAAACTATTGTCTATTGGTTCCAATGCAAACACCCTTTTAACCAGAGCTAAATCTATATCCACTTCATAATACTCTGAGGCCCAAGAATGATAATATTCAGCCCCGCCTATTAAAATTTGCAATAATTCTAAGTGCTCCTCTTTGTAATCCTTACTCCCAAGCCAATGTTCATTCT # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //