Array 1 3305-5406 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEXD010000005.1 Erwinia amylovora strain 1400-1 Ea_1400-1_contig_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3305 29 100.0 32 ............................. TTATTCATGAGCCTTTTTATCTTCGCGGCATG 3366 29 100.0 32 ............................. GTAAATAGCAAAATGATAAATAATTTATCAAT 3427 29 100.0 32 ............................. CTATGCAGAAGCGGAGGGCGGCGAGTGATGGA 3488 29 100.0 32 ............................. AGCATCTCGGGAACTGTGTTTTTTGTATAAAA 3549 29 100.0 32 ............................. AAGATGCTTTGACATTAATTATCTCCATAAAA 3610 29 100.0 32 ............................. CAAGCGATCAACCTGTTTTTCAGTAGGTTTAA 3671 29 100.0 32 ............................. ACAAAAGACAACACCCCCCTTACCCCCCCACG 3732 29 100.0 32 ............................. CAGGTATTTCGGATAGCCGGTTGTCTCGGCGG 3793 29 100.0 32 ............................. ACTGAAATTTAAAATCACCGCTAACCCGCCAG 3854 29 100.0 32 ............................. GGCGATGAGGGAGTACGCGGAGCGGCAGGGTA 3915 29 100.0 32 ............................. AAAAGCCAACCGCCCGCCCGTAATAAACCTGA 3976 29 100.0 32 ............................. GTTGCAGAGACTTAAAGATCGTCTGCTAGTTA 4037 29 100.0 32 ............................. TAAATGGTTGTCCGTTCTTGGCGCAGACGGCT 4098 29 100.0 32 ............................. TAAAGGAGCATGCTTATACAACTGACAAAATC 4159 29 96.6 32 ...........A................. AGATTTGGCGGAAATGTCGGCGGAGATGCCCC 4220 29 100.0 32 ............................. AAATGTCCTGTGGCTCGGCCCGATGCTGCAAT 4281 29 100.0 32 ............................. GAGATCATTCTCATCCCTCATGTTTTCCAGGA 4342 29 96.6 32 ............................A ATTGTAAAATCCTCTCCGCCAAATTTGATTAC 4403 29 100.0 32 ............................. AAACTCTCGCATACATGGACGGAATTTAACGA 4464 29 100.0 32 ............................. ACGATTTGCCTGAAACCTCAACGAAGTTCGAC 4525 29 100.0 32 ............................. CTGATGGCGTCACGAGCCATACGGAATGTGAC 4586 29 100.0 32 ............................. CAAAAATTTGCGCATGTCATCTATCTTTTTTT 4647 29 100.0 32 ............................. CCCTCGGGGAGGGCTTTGCGTTGTTACTCAGA 4708 29 100.0 32 ............................. GTTACGTTGAATGTATCGTTGGATGTGATTAA 4769 29 100.0 32 ............................. TACATCGAACAATGCCAATTGTTGACGTTCTT 4830 29 100.0 32 ............................. CCGCGAAAATCCGCAGTGAGCTGGCAATGAGC 4891 29 96.6 32 .............T............... GCTGTCTATCTGGGCTGCCTCTATCCAGCAAT 4952 29 100.0 32 ............................. ACTTCGGTGAGAATGTCGAATTGCCACCAGAT 5013 29 96.6 32 ............................A TTGAATCAGAGTCTTTCAGGGACGATGTTTTC 5074 29 100.0 32 ............................. TGAAGCAGCCAGAATCCCATCCGGCCTTTATC 5135 29 100.0 32 ............................. GCTTTTGTACCCTTTACAGTCAACGTACTGCT 5196 29 100.0 32 ............................. AGATTGAGATCTTATCAACGGACTCTGACGCC 5257 29 96.6 32 .................A........... TTTCTTCACACACAACGGTGAGGGCATTGTCT 5318 29 96.6 32 ..................T.......... TGATAAAGTAACGTTCCGAATGGCGCGTGATG 5379 28 93.1 0 ...........A.....-........... | ========== ====== ====== ====== ============================= ================================ ================== 35 29 99.2 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : TTCCGCTAAGCATTGGCAGAGAGCGTTGCAGTGTATCACGCCGCGCGCTTCAACCCGGAAAAGCGTCCACGAAAAAGGCAGGGGCGGTTAACTCCCTGTCTTATTCGAGTGACTTCAACCCTTAAGGCGTCCGGTCGGTTGCTTAATAGCAACGATAATCAGCAAACTGACGTGCCGTATCTGCAACATCAGCAGGATTGCTCCCGGCGTTATCACTAGTATTGCCTTGATATAAGAGCGTGCGCGCAGCCTGTAAGTGCGAGCACGTAATGGTCGACAAAAATCAATCCGGTTTACAGGCCGGTTTTTTTCCGCCGCCACGCTGCCATTTCCGCTATATTCAAGAAGTTCACTTAGTCGATTACCCTTGTATTTGGCCGAGTATCAAGCCGACTTTTCCCGTTTTGAGTAGCAAATCCGTGCGTGCTTTAAAGTGGAAAAAAGTTGGTAGAATTGTAGGGCGGTAAAAAAATCACTAAGATCAGTCAGATAGTTTTAGA # Right flank : GCCATGCCGGACAGTATTGAGCAACTGGCCGACGCCGCTTTACAGGCGCTGGATACCATATGTGACAAACAGATCGCGTTTTTTGGTCACAGCATGGGGGGACTGATTGCTGTTGAACTGGCGCGCAAGATGGAAATCTGTTGGCGCAAACCCGCGCGCGCGCTGTTTGTTTCCGGTTGCCGTGCGCCTGGCGAACCGCTAACGCGCTGCCTTAGCGGATTGGATGATGAGCTGTTTATCAGACAGTTGGCCGGTTTAGGAGGCACAGAATCCGTATTGCTGGAACAGCCGGCACTATTGCGGCTGTTTCTATCCACGTTACGTCAGGATATTGCGCTGTGTGAACGTTATGCCGGGCCACCCCCTGCACCTTTGCAAACGCCAATCCATGTTATATGGGGAACGGAGGACGACTTAATTACGGATGTGATGATCGATTCCTGGCGTAAATTTTCTACTGAGGGGAACGTCTTTTTTTATCCTCTTCAAGGTGACCATTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 16314-17930 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEXD010000005.1 Erwinia amylovora strain 1400-1 Ea_1400-1_contig_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 16314 29 100.0 32 ............................. CCATTTTATGACAGTCTGGCGCAAAAACTGGA 16375 29 100.0 32 ............................. GAGATGCACTGGATATACCGACTCCTCACTGA 16436 29 100.0 32 ............................. GCTCGGGGGGACATGAGCTTGTACAAAACAGC 16497 29 100.0 32 ............................. TTTTTAGCAGCGTGACAGTTATGGAGCCGCTC 16558 29 100.0 32 ............................. ATTATAAGGATCACTTGCTAGGGCATTATATA 16619 29 100.0 32 ............................. ACTTGACTGTTTATGCAGTGGTTGTATTTCTT 16680 29 100.0 33 ............................. ATCGGAACGACTTAGATTAGCGTCCTTGCACAT 16742 29 100.0 32 ............................. TAACCGCAACCATCGCCGCGATAAATCCACTG 16803 29 100.0 32 ............................. GTTGATACGGCTGATTACAATAAAATGTCACT 16864 29 100.0 32 ............................. TAAAAAATGCCGCCATCGAATCAGCAAAATCG 16925 29 100.0 32 ............................. CTGCGGAGCGTCAAACGGGCGTTAACTCTCGA 16986 29 100.0 32 ............................. CCCTTCTGGTGTTTTGATTCTCCTAGGTGATT 17047 29 96.6 32 ............................T AATGGACGAGATTTCACAGAAAATATCTGTTC 17108 29 100.0 32 ............................. GCTACTACGTGTACGCACAGCCGCTGGCCAGT 17169 29 100.0 32 ............................. CAGATGAGGCTGCAAATTCCAGGCACTTTTTA 17230 29 100.0 32 ............................. AGGGTGACGCAACGATTGTTGCAATTCCTAAC 17291 29 100.0 33 ............................. CACCAGTGTGTACATTCCAGACTCAGAAACCAC 17353 29 100.0 32 ............................. CCTCGAGGTGTTCTAAGCACTCCGGGGCTTTT 17414 29 100.0 32 ............................. GACGCTCAAATCAGTGGCGGCGAAACCCGACA 17475 29 100.0 32 ............................. CCAGAGGGGATTTAGCAAACGTCATTTCTGAC 17536 29 100.0 32 ............................. TCATCTGCGGGTCGGGTAGGCTGCTTACGGGT 17597 29 100.0 32 ............................. CAGCTATTCCCCGCATCGGTCAGTACTGCGCT 17658 29 100.0 32 ............................. TGGCCCACAATGGTAAAACCGGCGGCTTTCCA 17719 29 100.0 32 ............................. GCCAATGGATTCAGGATTGGAGCCAGAATTTA 17780 29 100.0 32 ............................. AAAAAAAGCCTAAAGCTCGAAAGAATAAAAAT 17841 29 96.6 32 .........A................... ATGATGGCGCTGATAGTTTTATTAGATGTCGA 17902 29 79.3 0 ...........AC..A.....C...T..A | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.0 32 GTGTTCCCCGCGTATGCGGGGATAAACCG # Left flank : ATTCCTCTGATCGAAACGGTGCTGGCTGCCGGAGAGATCTCCCCACCCTCACCCCCGCCGGATGCCCAGCCGGTTGCCATCCCTGAACCACAGTCTTTTGGCGATGTCGGGCACCGGAGTGCGTAATATGAGTATGCTGGTGGTGATCACTGAAAATGTTCCTCCCCGTCTGCGCGGACGTCTTGCCATATGGCTGCTGGAAGTGCGTGCGGGCGTGTACGTGGGTGATGTTTCGCGCCGCGTGCGGGAAATGATTTGGCAGCAGCTTAATCAGCTTTACGAGAATGGCAATGTGGCGATGGTATGGGCCACTAACAGCGAGTCGGGTTTTGAATTTCAGACGCTGGGTGAGAATCGCCGCCTGCCGGTGGATTTGGACGGTCTGCGGCTGGTGTCATTTTATCCCGTCTGACATGCAAACCGCGGCTTTTGACAGCAAAAAATCCGGTAGATTTTGACGGGTAAAAAAAGCCGTTATGGTTCAATGGTTTGTATCTAGA # Right flank : AATAATATGTTTAATGCCAGCCCGGCTTCGGTATTGCCTCGCCGGACTGAGCCTGGCTACATTACCGGTAAAAGAGGGTAACGCTAAGCAATTCACGGCGTGCCGTTCAGATCGCTGCCTGGTCGAATATCGCCCTGGGTTCGATTGTTAAAACCATGCAATACGTATTATTGGCAGATGCTAAGTGGGCCTCCTTTGAAACCAGCAACGAGACAGCTATTTTTGTAACGAAAAAGGTGTATTTGTCCGGTAAACCCCTCTTTGGCTTGCGGATCGATATATTTCCCGGTGCGTGGGTCACTGGTTAATGGCCCTGCTATTCTGAATGATTTAACGGTATTGACATTAATTGAGTCGTAATTGAAGTGGCGTTCAGTTTCGATAGTCCTTTCTGAAGAAAACTCATCTATTTTTCCCTGTGGACCATCAATTGATACTTGTGCGGAATACCTGTGTTCCTGTCCACCCCGATAGGTAAACCAGGTGCTGCGGCTGATCAC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTATGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 27394-27722 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEXD010000005.1 Erwinia amylovora strain 1400-1 Ea_1400-1_contig_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 27394 28 100.0 32 ............................ TTTACGTTTGCGTTAACAGTAAGCTCTGCAAC 27454 28 100.0 32 ............................ ATCGCACCCCACTGATTGAAGAGCAGCACACT 27514 28 89.3 32 ......C..T..........T....... TAGCAATAAATTCGATAGACGCTGATTTGCGT 27574 28 96.4 32 ...................T........ TGGCTTCAATTGCGGTCGGGTGTGATGCATCA 27634 28 96.4 33 ..........................G. GCCAACGTTCACTGTCATTTAGCCACGCTTCCG 27695 28 78.6 0 .....A........G.....T...TTG. | ========== ====== ====== ====== ============================ ================================= ================== 6 28 93.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATGGCGTTTAATATGGATAAACCGTCGTATGAGGTTAAGCGGGGCGTTTATGAGAAGTGGACGATCTCAGGCGAAGGCGATGAGATGCTGCATCCGTTCCATATTCACGGTACCCAGTTCCGCATCCTGTCGGAGAACGGCAAACCTCCTGCCGCGCATCGTAGCGGCTGGAAGGATACGGTACGTGTTGAAGGCTGGCGCAGCGAGGTGCTGGTGCGCTTTAACCACCAGGCAGACAGGGCACATGCCTATATGGCGCACTGCCATCTGCTGGAACATGAAGATAGCGGTATGATGCTTGGTTTTACCGTGGCGTAATAAATACAGACTGGCGTTATAGGATGGTTTTCGCCGGGTAACAGGCCTGTCTGGCGAACCCTTTTTTCTAAGATTTAACTTGTTGATTTCTAAAGCGTGATAATTCAACAGAAAAAAGGGTACAGCACGGTTAAGCTGGTAAAAAGTTAATGCGATAAGCCAGTTAGCCCGGTAATGTAACG # Right flank : AGGACTGAATGACTTCTCCCCTTGCCTGAAAGCATACTTTGCTTCACGGGCTTCTCATGCTGTGGACATTACGCTGACAGGCAGAAAACAGGTTATCCGTGGCACATCTCCGCTGGCGCCAGCGGCTTCACCGGTGCGCCTGACCTTACCTGTGCAGTGCGGTCTTACCGCCGTTGTATGCAGATATGATTAAGACGGTTGTTTCACTGCAATTAAATCAGCTAAATGTAAAATAAGAAAAACCCCCGGTTAAAGTTCTTAATTTGAGAGTATTAAGTGGGGGTTTTTCACGGTTTTTTTACAATAAAAAAAGAAAGATCTTATATTTTTTTTATGCTCATAATTTGGCTGTTGAACCTGTTTTTAAGCTATTTGAAATTTTTTTACTCAATAATTTCCAGAACTTTCATTTTGAGTTAGCCACTTTTTTTCTCTCCTTTTTCTTCGATAATGGTTCCGCATGCAGTGCAATTGACGTTTTTTGTATTGAATGAAATGCA # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //