Array 1 955413-956419 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029041.1 Salmonella enterica subsp. enterica serovar Worthington strain CFSAN051295 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 955413 29 96.6 32 ............................A ATGCCGCCACTTCCATTTCGTTCAAATGCCGC 955474 29 100.0 32 ............................. AGAGCAGCTTGCTCACTACCGGGGCAGAAGGG 955535 29 100.0 32 ............................. TATTTGGACAATCAGGTCGAGGTTCAGTATGA 955596 29 100.0 33 ............................. TCACAAATGCGAGGAGTCAGCCCAATGAGCAAC 955658 29 100.0 33 ............................. ACGGGACCGATATTCTGCTGCCCGGGGGCACGC 955720 29 100.0 32 ............................. GAGTTCAGTCACTTGAATGATGCGCGGGAATA 955781 29 100.0 32 ............................. GTCGTCTGGCATATGTGCGTAGCCACCTCGCA 955842 29 100.0 32 ............................. CGGATGATTCGCGCATGACTTGGGCTACTGCG 955903 29 100.0 32 ............................. GGATATCGAACTCTTACCGCCGACGATATTGC 955964 29 100.0 32 ............................. AGAGATTGATTAAATGAACAGTAACAAACTAA 956025 29 100.0 32 ............................. GCGCGTCAGCGTGGATTAACTCAACAGCGCTC 956086 29 96.6 33 ..........A.................. TCTGGTGCTGGCGGTTTACTGGGGAGTATTGGC 956148 29 100.0 32 ............................. GAGTTTGGGGGCACTATGAAGGGATCGATGCT 956209 29 93.1 32 .........C..T................ ACGTTTTGCGAGCCATCAGAAACCTTAAATGC 956270 29 100.0 32 ............................. AAGGTTAGCGTTGTCATTGATCTGGTCGGCAA 956331 29 96.6 32 ............T................ AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG 956392 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 17 29 98.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 965154-966894 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029041.1 Salmonella enterica subsp. enterica serovar Worthington strain CFSAN051295 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 965154 29 100.0 32 ............................. CCCCTCGCCCTCGATCTGGCGTTAGTTACTGG 965215 29 100.0 32 ............................. TCACACGTTAGATCAACAGTTGTGTCCGTATT 965276 29 100.0 32 ............................. GGCCTGATGAAAATTGCCGATAGCATGGACAA 965337 29 100.0 32 ............................. TTTACAGGTCATTTTGCTGTCCTCATTTTTGG 965398 29 100.0 32 ............................. TACTGGATATCAACCTGCCTGAGTTAAAGACC 965459 29 100.0 32 ............................. CCTTGTGTGCAATGCAACAAAGGCGAACTGGC 965520 29 100.0 32 ............................. ACACTCAACGCTGTAGATGTAGTCAGTAAACC 965581 29 100.0 32 ............................. GCGTGGAGTAATGGGCGGCTAAAACTGCCGGA 965642 29 100.0 32 ............................. ACCGCAGGTGATATTGACACCGGAGCAGGGGG 965703 29 100.0 32 ............................. CCAGTAGTCAAACCCCAGATTGAGCAGTGAGA 965764 29 100.0 33 ............................. CAGCAAAAGTAAAAACCGCTTCCGCCCAATTGC 965826 29 100.0 32 ............................. GCTACGGTAAACGTGAATGTGCGTATTGACGC 965887 29 100.0 32 ............................. GAATATAGGGCTTCATATTTGCCAGTTGTTTT 965948 29 100.0 33 ............................. ATCGGGCGGGATATGTGCTGGATTCGTATTAGC 966010 29 100.0 32 ............................. GTTGAATAATCCCCGCACATCATCCTGTAAAA 966071 29 100.0 32 ............................. CAGTCTGCGGGGTTTCCTGCGTGTAATGAAGT 966132 29 100.0 32 ............................. GGAAAAAACGCTTGTCGCCAAGTATGTTTTTG 966193 29 100.0 32 ............................. CACAGAGTTAAACGCCGCTGCAGCGCTGTTTA 966254 29 100.0 32 ............................. TTTTTATCACGCTCAGACCTGAAAACAACCGA 966315 29 100.0 32 ............................. TTCCATATTCAGGATCATATCCGCACGATAAC 966376 29 100.0 32 ............................. CCTGACGCCAACGGAAACGTGAAAGTCTCAAC 966437 29 100.0 32 ............................. TGTTCCCCCAAGGTTCAAAAATTCAATATGAG 966498 29 100.0 32 ............................. GATGACCCGTATACGTTCAAAATCAAAATCTA 966559 29 100.0 32 ............................. CAATAGGGAAAATGGCATATGAGGGCGCGCAA 966620 29 100.0 32 ............................. TAAAACGATATTCCCGGATAAAAACGGAAAGC 966681 29 100.0 32 ............................. CCGACATGGGCAGGATTGCTGACGTTAGTCGA 966742 29 100.0 33 ............................. GCCTCAAGGTCATGCAGGTGAATGTCCCCAGAC 966804 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 966865 29 96.6 0 A............................ | A [966891] ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGAGAATAAAAGCGCTCTTTCCTTTAATTACTTTGCCTGAAGCCTGGGATGAAGATGAGGGTATCGACCAATTTCAGCAACTTTCCTGGTTTATTTCCGCTGCGGTTGTACTGGCTGACTGGACTGGTTCTGCCAGCCGTTATTTTCCGCGTACTGCGGAAAAAATGCCTGTTGATATCTACTGGCAGCAAGCTCTCGCTAAAGCACAAACTGCCATTACGCTATTTCCCTCAGCGGCGAATGTGTCTGCCTTTACGGGCATAGAAACGCTTTTCCCTTTTATTCAGCATCCCACACCGTTACAACAAAAGGCGCTTGAGCTGGATATCAACGTGGATGGCGCCCAACTCTTTATTCTTGAAGATGTCACTGGAGCCGGAAAAACAAAGGCGGCGCTCATATTAGCTCATCGACTGATGGCGGCAGGTAAAGCGCAGGGACTCTATTTTGGACTGCCGACAATGGCGACAGCCAACGCGATGTTTGAACGTATGGCGAAC # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //