Array 1 170299-166825 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFEJY010000001.1 Bifidobacterium callimiconis strain CP1 Contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================================================================================================================================= ================== 170298 29 100.0 32 ............................. TGGTCGTGGAAGGATTATTCGGCTTCGTTCGA 170237 29 100.0 32 ............................. GTGCCGGTGATGAGGTTGCTTTTGCCTTCGCC 170176 29 100.0 32 ............................. CTTGGACAGCGTCTCCGAGCTGAGGGCCGCGG 170115 29 100.0 32 ............................. TGGGCGTCAATCCTCGCAATCGCCGTCTACCT 170054 29 100.0 32 ............................. GAACTACCGATGAACACCCATGACGACCTGCC 169993 29 100.0 32 ............................. GATCAACTGATGAGCGTTGTAATCGGTCGTTC 169932 29 100.0 32 ............................. GGCATGCCCGACCAGGGCAAGACCCCATCCAC 169871 29 100.0 32 ............................. GGCCAGCTCGTTTTCCCCGTGCGCCGGGTCTG 169810 29 100.0 32 ............................. ACATCGAAACCTACGCCCACACCCTCGCCAAA 169749 29 100.0 32 ............................. TAGTCGGCCTCGGCGATGGCGCCGACGCCGTT 169688 29 96.6 33 ............................A GACCGCCGCCAGCAACGGCGTAAGCGCCGTCGT 169626 29 100.0 32 ............................. TACCTGTTGACGCATGCGGACGGCAAGAGCCT 169565 29 100.0 32 ............................. CTGTTCTCGTCGGATCCGTAGGCGAGATCCAA 169504 29 100.0 32 ............................. GGTCTGGGCAAGGCCATCGAGGGCAGCCTCGA 169443 29 100.0 32 ............................. TTCTGCAGGTTGGTCACGTTCCAGGTGATGTC 169382 29 100.0 32 ............................. ATCACGTAGCCTTCGGTGCCCTTGGTCGGCGT 169321 29 100.0 32 ............................. GCTGTTGACCCACATTCCCTCCCGGCTGGTGA 169260 29 100.0 32 ............................. CGAAGATCGATACTCGTGAGTACGAGCAGGGT 169199 29 100.0 32 ............................. TAGCGGTCGTAGGCGTATGGGGTGCCGGGTAG 169138 29 100.0 32 ............................. GCATCGGCCACGGCACGCTGCAGGTCGACGGC 169077 29 100.0 32 ............................. GCGAAGTTCGAGGCCGAACGCGAACACTCCCG 169016 29 100.0 32 ............................. GCCCACAACCAGATCGCCTACCGTACCGAGGC 168955 29 100.0 32 ............................. GCGAGTTCGAAGTCGAGGAGCCACATTTCGAC 168894 29 100.0 32 ............................. ACGAGCCTACTCGCGCGGGGAACAAAACATTG 168833 29 100.0 32 ............................. GAGGCCCGTATGGGCGAACCAAGTGAAGAGAA 168772 29 100.0 32 ............................. CGGAGACCACCGTACCCGTGCAACGTGGCTTT 168711 29 100.0 32 ............................. GTCAACTGGCGTAACCCCGAAAGGCCCAGTCA 168650 29 100.0 32 ............................. TGGGGGTTCGCGCAGAACACGAACTACTGGCC 168589 29 100.0 32 ............................. GCAGATCGCATGGGCCGCCGAACTGCGCGACC 168528 29 100.0 32 ............................. GAGTCGGACATGACCTAGGTTACTTGATTCTT 168467 29 100.0 32 ............................. GAAAAAAGCCTCGCGGGGGCATGACCCCCGAC 168406 29 100.0 32 ............................. AAAACGCCCTCATATGTCCGAAATATGTGATA 168345 29 100.0 32 ............................. GCCCCCGCGCCGAACTACTCGCCCGCAACGAA 168284 29 100.0 32 ............................. TTCAGTGCGTTGTTGTACTGCCTCCATGCTGT 168223 29 96.6 32 ............................T CGGTCGGCGGGTTCGATCAACGGAATCACGAT 168162 29 100.0 32 ............................. GTCGGGGTCCGATTGGAGGAAATCACGGACGC 168101 29 100.0 32 ............................. GAGCTCATCGACAGCTTCGTGGAAGGCCGCAC 168040 29 96.6 32 ............................C ACAGTTCCACCTGCCCCTGCGCGCGCAATTCC 167979 29 100.0 32 ............................. TAGTCGGCCTCGGCGATGGCGCCGACGCCGTT 167918 29 100.0 32 ............................. TCCTTCGCGCTGCTCGTCGCGCCGATGGTGAG 167857 29 100.0 32 ............................. GCGCCGTTGTTCTGCCAGAAGACGCGCAGGAT 167796 29 100.0 32 ............................. TCGAGTCTGCGGGTGCAGGGCATGAAGGCGTT 167735 29 100.0 32 ............................. GTGCAGCCATGCGACGCGCGCTGAGCCGGATC 167674 29 100.0 32 ............................. GGCGCGCAGACGGTGGCTGAGTTGTTCAACAG 167613 29 100.0 32 ............................. TTCAGACAAAGAGAAAAATTCAGATAACCGGA 167552 29 100.0 31 ............................. GCCGTGGTGGACGAGCGCGACCAGTGGTCGT 167492 29 96.6 93 .G........................... TCCCCCGATTCCCTGCAGCTTGTGGTTCATGATAGTTTGCGGGATGATGATGTTGGGCCGAAGCCCCGGATAGGTGCGGAATCCGGGACTTCG 167370 29 100.0 32 ............................. TCCAGACGCGTGCCGGGCACGTCGCCGCCCAT 167309 29 100.0 32 ............................. CGTCTCGTCCAGCACTATCAGCCGATAGTCAT 167248 29 100.0 32 ............................. GCCGACCTGCCCAAGAATCTCACCGCTGCCGA 167187 29 93.1 185 .............G..............A CAGCCGGGTTACAGCCAGCCCCAATCGACTCGCCGGGCGGTATGATGAGGGTGTAAGGCGGTTTCAGGGCTCTGCTAATAGGGACTTGAATCGCCTTATTTAATTCGCAGAATGGTCCCGTCCTTTCGTACCCGGAGCACCTCGTCTATGCCGTGTTGATTGGCTCACCTGTGCAATTCGCCCGT 166973 29 75.9 30 .C......T....GT..A.........TT TGAGGAAGCCGGAGTCCGGTACCCTCGGTG 166914 29 79.3 32 AC.....T.....G......A......T. CCGAGTAGGAGGATGATGTCCCGGTTGCGTTG 166853 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ========================================================================================================================================================================================= ================== 54 29 98.8 36 GTTTGCCCCGCACACGCGGGGATGATCCG # Left flank : CGTCCCAGACCTTTACCGCGATCTCGCCGGTGTCTTCCAAATGCTGCCATAGCTGAAGATATCGGTTGTCCGACGGATCCTGGAACGCGGTTTTCGCCCAGACCGACAAAGACGATTTGGATAGAGGCGGAATGCCGGCGGAAAAATGAGGTCCGGGCGGAGGAACCTGAGGCATGCTTTGAGATTCCTCCTTTTTTTAAAAACCTTTAATCTACATCCTTTATGCTAATCGCAAAGTCTCAAATGTACAAGTGCTGCCGTTTGTCTATACCACTCAACCCCGCATATGCAGGGCAAAGGACACATAGAATCTGCATCCTGGATCATCCCCGCATATGCATGGGACTATTGGCATGCGCCCAATACCAGCATCTATGATAGGTATGGTACTAGGCCGATTGTTCTCATGAGAGGACCCACTACTCATGCTTCGTCCAGCAACTGCGCCAATCAAATTTTTTGGCTTGACGATCATCTTCCTTCCCGCATAAAATCACACT # Right flank : AACGCTTCGGCGATGGCCTCGCATTCGCTGGTGAGATTATCCTCCCACTCGCCCTTCTGGAGCGGGTTGGTGGGATGGTGTTCCGGTTCGGACGGCGCCGGGCCGTCACCGGACGGGGTGGAGCCCTTGAACGCGGCCAGCGCGTCCAGGGCCTTGGTCAGGGCCTCCTCGCTGTCGGCGTTGAGGCTGGCGGCGAGATCGGCGGGGATGCCGCGCTCCCATGCGAGTCGGTCGTGTGTGCGCGCGAACCGTTCGGCCTTCAGCTGGCCCTCGAACTGGCTGGCGTTGTCGCCGGCCAGTTTGGCCGCGCCCTGCGCTTCGGTGAGCGCGTCGGTGATCTCCTTGTTCCTCACGCGCGCGGCGGCATTCTCGTCGCGCAGCGAGTGGATGAGCTTCTGCGCCCAGTCGGGCAGGGACTCGATGTCCTGTCCCTCCGGCGTGGTCGGCTCGTTGTCGGTGGTTTCCTCGGCGCCCATCTGGGGTGCTCCTTTCCCCACGCT # Questionable array : NO Score: 5.85 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.34, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCCCCGCACACGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTGCCCCGCACGCGCGGGGATGATCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [17-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //