Array 1 1347827-1348055 **** Predicted by CRISPRDetect 2.4 *** >NZ_UFXG01000001.1 Clostridium tetani strain NCTC539, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 1347827 30 100.0 37 .............................. GAGGTGTACCCACCTTGTGCCCACTAAGGGGACAAAG 1347894 30 100.0 35 .............................. GCTAAATGTGATAAGTATTTTACCAAAGAAACAAA 1347959 30 100.0 37 .............................. GCTATCTAATTCAGGCAAATTAAAATGCTCTATAAAA 1348026 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 4 30 100.0 37 ATTTACATTCCAATATGGTGCTACTAATAC # Left flank : TAAATCAATGAATAACTAAAAGTTAGGAATTATGGAGGATTTTCTTACCTGTATCAGAAAGTCTTATATTTTATTGAAAAGCCAACATTGGATAAAGTTCTATCCAATGTTGGTTTTATAATTATATAGATTAAAAATGTGTAATTACTAATGATTTTATCATGGATAATATTCCATCCATGTTATGTTATAAAATAAACTTTTCTTCATATCTATTTCTTCTTTATTTAAATAACCTCGGTTAAATTATACATAATAAACATAAGATATACAAAACATTGTAAAAAGGTTTTAATAACATTTGAAATAGTAATATTACTAAAATACTCATAAACTTCATAGAATCTAACATTATACCCATTTTCATTTAACATTAAAAAATAAAGTGCTTACTATTTCTTAGGGTATCAGTATCCAACTAATATATATAGTTGTTTTGATTGTTACGAATAGTGTTACTGATACAATTTATACCTATTTTATCTAAAATCTACAGTTAT # Right flank : CACGTTCATCTATGATGCACTATATGTCTATAGTATAACTTCTATTTCTGTCTACCTACTAAGTTGGGATTTCTTATAGTCTATTATTATAATACAAGTTATGTTAAATAATTTATAAACCATTAATATAACTATAATTGTCTACTCCCTTATATTTTAACATCATCTTAGGTAGACAATCAAATAAAGTTACTGGTTCTATCTTCTTTTTTACCCCACATATCTTTAGTTAACCATCTTTTATTTCTACTTTTGAATAATATTACAGAATCTTTATCTTTCCTTATTATATCATCTAATTCATATTTTAGTTTAATTATTTGTGACTCTGCTAATTCCCCTTCAAATACTGAGTTTTGAATATGTGATAAATATTTTTTACATACTTTAAAAGTTCTATTTAAAACTCTCTGCCCCTCATCATCACTTTTTATATCATAAACTAATATAACATACATTTAAACCTCTCCTACCACCATATTTTAAATGGTTCATATTCT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTACATTCCAATATGGTGCTACTAATAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [76.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 2 1449355-1448093 **** Predicted by CRISPRDetect 2.4 *** >NZ_UFXG01000001.1 Clostridium tetani strain NCTC539, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 1449354 30 100.0 34 .............................. TAAGAAACTACATTATAGAATGGATAATGGAGAA 1449290 30 100.0 35 .............................. TTGTATTCCAAATAACAACCTGACAATTCATCTGA 1449225 30 100.0 35 .............................. ATTAAATACAAAATAAAATCCGTTAGTTCCTCAAA 1449160 30 100.0 35 .............................. ATATCTAAACATAGAAAAATGGAAACTATGCGGTT 1449095 30 100.0 35 .............................. TTCAATTCTATATTTAATTCTAATTCGCAACTATA 1449030 30 100.0 34 .............................. TATTTAGAATGCAGAGTGGTCCAAGGGCAGCACT 1448966 30 100.0 37 .............................. ATAAAGCTAAAGAGTGGGAAGCCGACTTATTTATATC 1448899 30 100.0 34 .............................. AGCTACATCATGATAAGCAAATTGAAATGCTTAA 1448835 30 100.0 34 .............................. AAAGGATTTCGGAGAGAGTATAAATTTAAGTCAG 1448771 30 100.0 35 .............................. CTTAAAATATGGCGTATAAGACGTACAGAGTACGG 1448706 30 100.0 34 .............................. GTTAATTACAAATACAAATGATACAGTAATTTAT 1448642 30 100.0 35 .............................. TATCCTTTACTTTTTAATTCTTTTAATAAATTCTC 1448577 30 100.0 36 .............................. ATAACATAGTTTATAAATTCTTTGGCTTCATTACAT 1448511 30 100.0 36 .............................. CTATAAATTATGGGAATTAGAAGTTCCAGGAGTTGG 1448445 30 100.0 35 .............................. TATGGTCTTAATAATGTATGTTTTTATATGGTCTA 1448380 30 100.0 34 .............................. TTTATATGTTCGACACAATCACGTTCCCAATTTA 1448316 30 96.7 34 ....G......................... AAATTATACAGAACTTGAATTAGATACTGATTAT 1448252 30 100.0 36 .............................. AGTAAATTAGTATGAAGCTATTAATATAAATAGTTC 1448186 30 96.7 34 ...............A.............. AAAAATAAAAAAAGAGGTAGCTCCTAGCCTAAGC 1448122 30 93.3 0 ............................TA | ========== ====== ====== ====== ============================== ===================================== ================== 20 30 99.3 35 GTTGAACAATAACAAGAGTTGTATTTAAAT # Left flank : TACTATTGGACTCTAAAAAAGACGATGAAATAACGATAATTAATAACTCTAAAATAGATGAGGGCAAATTCTATATTGGAGTTTTAAATTCTGAGAATGAGATTATTGCTTTTGATAAAGAAAAGCAAGACAAAATAACATTTGTAACTCCTGAAGAAGGATGCTATCTTGTTAGGATTTTAGCTAAAAACTCTAGTGGAAAATGTGATGTGAAAGTAGATTCTAAAAAAGGCATAGATCTTAATTATAATTCTATTAATGGGCATAATATGGGTTTACTAGAGAAAAATAATTGAATAAATCTTATATATAAAGTAATATTATTTACCAGGTGATTTTAATTGATTACATGCTTTAAAGCATTGATTTAACAGGGATTGATTAATGTTTAAAGGAAGCATTTTAAAAAAGCTAAATCGCCTGGTAAATTTTTAATGAAACCTTGAAATATCAATGGGTTTATGATATTCTTAATTTTAAGAAACCTTGATTTTACAGTG # Right flank : AACTAAGCGAAACTATTAAAAACAGGAAGTGGAAAAATGTGGTACTTGGATTTACTGCCAATTCTTAATTTCAAAAAAACTCCTTTATAATAATATTGTAATATTGAAATATTATTGGTATAATACACTCAAGTAAAGTTTATTATAAACTTACTTTGATTGTTATAATTGTGGGTTAATTTTATATTTAAGCTAAAGAATTACTAATTCATTCATATCTTAATACTTTTAAAATAGGAGAATGTGTATATGAAAGAATTTAGTATTAATACAGATGTTTATTTTGGAGAAGGCTCTTTAGATAGACTAAATGAAATTAAAAATAAAAGAGTACTAATTGTATGCGATAAGTTTATGGAAACTTCAGGTATGGTTATAAAAGTACAACAAAAGCTTACTGACTGTGAAGTAACCATATACAGTGATATTGTTCCTGACCCATCTGTAGAAGTTATTGCATCTGGTATTCAAAAATTACAGAGTTGTAATGCACAGATTAT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAATAACAAGAGTTGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 3 1451822-1451206 **** Predicted by CRISPRDetect 2.4 *** >NZ_UFXG01000001.1 Clostridium tetani strain NCTC539, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 1451821 30 100.0 34 .............................. CTAACTATACTACATGCTCTATAAGATTAAAAAA 1451757 30 100.0 35 .............................. AAGTCTATTACTTCTTTCCCCTTTTTTAGGGCTTC 1451692 30 100.0 34 .............................. AAAACATGATCCTTTGTTGTTCTCGTACCATTCC 1451628 30 100.0 35 .............................. TATATCTTTTTAGCCATTACTGTTCCCCCTCTATA 1451563 30 100.0 36 .............................. ATGGCTCAATGGGTGTGTTTTTTTGAAAAAGTTGAA 1451497 30 100.0 37 .............................. TTTTTAAAATATAACAAAAAAGCAAAATCCGCATCAA 1451430 30 100.0 35 .............................. CCCATATCATTAAAATTAATATATGGACAAATATA 1451365 30 100.0 36 .............................. GTTATTTTACTTGATGCGAATGCTACAGTAGTTACA 1451299 30 100.0 34 .............................. ATTGCTGTAAGAGAATATATTTTATCTGGATTAA 1451235 29 90.0 0 ................-.A...T....... | T [1451219] ========== ====== ====== ====== ============================== ===================================== ================== 10 30 99.0 35 GTTGAACAATAACAAGAGTTGTATTTAAAT # Left flank : ATAAACCCTTTTAGAAATGAAGTGGTTTTAGGAAATCTAGATGATCTTTTAAATACAGAACTTATAGCTAAAGATGTAAATTATATACCTTTTGATAATTTAAAAGAGCCAATGGAAGTTGAAGCTAAAATAAGATATTCTCAAATTCCTTCAAAGGCAGTAATAACACCTATGGAAAATGATAAAGTAAAGGTGAACTTTACTGAAAAGCAAAGAGCCATAACTAAAGGGCAATCTGTAGTTTTTTATAAAGGTGATTTATTAATAGGCGGAGGAATAATTGAATAAAGTTTCTTTTAATACTTATATATAAAGTAATATTATTTACCAGGTGATTTTAATTGATTACATGCTTTAAGGCATTGATTTAACAGGGATTGATTAATGTTTAAAGGAAGCATTTTAAAAAAGCTAAATCGCCTGGTAAATTTTTAATGAAACCTTGAAATATCAATAGGTTTATGATATTCTTAATTTTAAGAAACCTTGATTTTACAGTG # Right flank : AAATCATTTTGAGAATATAAATTTATAATGTGACTATAAAATTTTAGCCCTAAAATAAAAGAAATGGTGAAATGTTTTGGTCATACCCTCAACTACATATATGAGAATAGTCTCTTCCTCTCCATTAACATATAATATTTGTCCTGATAGTGGGTAATTTTAAAATTTTTATGCATATTTATATAAAATAGAGTATTACTTTCTTAGGAAAAATAAGTTTTATAAAATAATTATATTTTATATTTATTGATGTTTTATTATATGAGAGCCTTGCTAAATGTATTTTACAGCTATTTATAATAATTGGTATTTAGCCAATCCTAAATATAGGTCTTTGCTCCCATATGCGATACGTACACTTTATTTGAATTAACCTTTAATGAAGTTGAGATTTCATTAAAGGTTAAATTATTGTAATATCTTAAGATTAAAAGCTAGTCATTTTCAATTACTATAGAATTTACTAGTTTATCATGAAATCCTTGATTACTATCATTAAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAATAACAAGAGTTGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [83.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 4 1456261-1455970 **** Predicted by CRISPRDetect 2.4 *** >NZ_UFXG01000001.1 Clostridium tetani strain NCTC539, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 1456260 31 100.0 33 ............................... AGCATCTTTTTTCTTATCTTCCACTGTAAGTTG 1456196 31 100.0 35 ............................... TTTTCCAAACTTGCTTATTAAGCTGTTATTCATTA 1456130 31 100.0 35 ............................... TTGGCACAATCAATACTGTATCTCCTATATTTAAA 1456064 31 100.0 33 ............................... TAGCTTGAGAACCTGTTGGTTGTGAACCTTGTT 1456000 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== =================================== ================== 5 31 100.0 34 GTTGAACCTTAACATAGGATGTATTTAAATT # Left flank : AAGTGGAAGAAACCCATATAAATGCAGAAGATAATATTAAAAAGATAATAGGGGTTTATTGCTAAGATTAGTTATATAAAAAAGAAATAGAATAATAAACAGAGTTCTTGGTTTTAGAGGGAGTTTTTACTCCCCATAAAGCTTAGAAATCGTTATCCAGGGACTTAGCTACTCTTTACTCCCGCTTTAAAGAAAATGGAAGTATTAGAGCTTATCGTCATCGGATAAACTAAAAGCTCTCACATGATGGGAGTTTTTAGTTTTTTAACTTATAAAAATAAGTATATACTTATAGTGTTATGAGATAAAATATAAATAAAAGTTTTCCCAGGTGACTTCAAATGAAAATATAGCTTAGAGTCTTGATTTATAAGGGGTTACATACTATTTTTAAATGTGATTTTTCAAAAGTTAAATCGCCTGGTAAATTTTTATGGAAATGTTGAAATATCAATGGTTTTATGGTATTCTTAATTTTAAGAAACCTTGATTTTACAGTG # Right flank : AAGTTCCTTTCTTTTTAGTGGAGTACATAGATAGTATGCAAATGCTCTTAATAGCAATTTAAGGAAATATATGGTGTAATGGCGTTGTTATAAATTTGAAGGAGTGATATTTCATGAGTATTTTAACAAGTTGTATTATTGGACTTGCTTTTATTGTAATTGGATTGGTATTAAGGGCATATCCACCGCAGCATATAAATAATAGTCTTGGATATAGAACACCATTTTCTATGAAAAATAAAGACACATGGTATGAGGGAAGTCGTTTCTACGGGACAATACTTTTAATAAGTGGTATTATTTTTATACCATTTTCAATATTAATAAGATATTTATATAGCAATAATTTAAATTTATCAATGGGAATATCGTCATTGAGCTTGTTGATTATTATAATTATAGGTATTGTATATACCGAAATACATTTAAGAATGATATTTGATAAGAATGGAACAAGAAAATGAGATAGTTAAAGGGAAGTCTAATGACTTCCCTTATAA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCTTAACATAGGATGTATTTAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:74.19%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.20,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 5 1458925-1458382 **** Predicted by CRISPRDetect 2.4 *** >NZ_UFXG01000001.1 Clostridium tetani strain NCTC539, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =================================== ================== 1458924 30 100.0 35 .............................. TAAATCCAGTTGCCACTTTATTAGCCACTTGATCT 1458859 30 100.0 34 .............................. ACAAATGTGCGTGAGGGCTAGAATTATACGCTCT 1458795 30 100.0 33 .............................. GTTTTGCCTCCTAAAATAAAAGAGTTTGGGGAA 1458732 30 100.0 34 .............................. TTGAATACTGCTTTAGCTTGTTTACTAACTGGAG 1458668 30 100.0 34 .............................. CTGCCATTGGGGAAGTGAACAATCCCGTCATGCG 1458604 30 100.0 35 .............................. CCATACTTCTTTATTTCTCCTTCATAATCTCTGTT 1458539 30 100.0 34 .............................. TAAATCTTTAATCCCAGTTCTTCTAATGCACTTT 1458475 30 100.0 34 .............................. GATAAAAGGAGTATGGGACGATACAACTAAAGAA 1458411 30 96.7 0 .............................A | ========== ====== ====== ====== ============================== =================================== ================== 9 30 99.6 34 GTTGAACAATAACAAGAGTTGTATTTAAAT # Left flank : TTTAGTTTAAAGGAGAGAATGTAGATGAGTAAAAATTTTAATTATAATTATGCATTTGTTTTTTATGATGTTAATGAAAAAAGAGTAAATAGAGTGTTCAAAACCTGTAAAAAGTATTTGTCACATTTTCAAAAATCTGTATTTAGGGGAGAACTTACACCAGCAAATTTTATATTATTAAAAAAAGATTTAAATAAAGTAATAAATGAAGATGAAGATTTTATATGTATAATAAAACTTATGAATAATAAAGTTTATGATGAAGAAATATTAGGAAATCCACACAGTTGTACAGGGGAAGACTTGATATTATAAATAAAAGTTTTACCAGGTGATTTTAAATAGGAATATGCTGTAAGATATTGATTTATAAGGGTTTATATCCTATTTTGAAATGTAGTTTTTCAAAAGTTAAATCGCCTGGTAAATTTTTATGGAAATGTTGAAATATCAATGGTTTTATGGTATTCTTAATTTTAAGAAACCTTGATTTTACAGTG # Right flank : TATACATTAAAAAAACTTAGCCATGTCTTTTAAACCCATGATTATTCTGTCTAAATATCTTATTCTATGCTAATATAATAGGGTGAGGAGAGTGAAAGTTATATGAAAAAAAGATTTAATGTAACTGGAACCTGTATACCAGAAAGACACTATATGGTAGATATATCTAATAAACTAGATAGTATATTAAAATTGGTAAATAATGAAGAATATTTTATTATAAATAGACCAAGGCAGTATGGAAAAACCACTACTTTATACATGCTTGAAAGATATTTAAATAAGTTTAAGGATTATTTAGTCATTTCTATAAGTTTTGAAGGGATTGGTGATTTAATTTTTCAAGATGAGAAGGTATTTTCAAAGGAATTTTTACAGATAATGTCTGATTCTCTTTTACTAAATAGCCAGGCATTGTCTGAGTGTTTAGAGGAACAAAAGCCACATGTAGAAAACTTTATTGACTTATCAAGAGTTATAACCAAGTTTATTGTGAAAGC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAATAACAAGAGTTGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 6 1468712-1468228 **** Predicted by CRISPRDetect 2.4 *** >NZ_UFXG01000001.1 Clostridium tetani strain NCTC539, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 1468711 30 100.0 34 .............................. TGTGGGGAGGTGATATCGTGAAAGATAGAATCCG 1468647 30 100.0 34 .............................. TATAATCCTAAAATATCACCTTTGTATTTAAAGT 1468583 30 100.0 35 .............................. AAGAGGTATATAATCTAAATAATGGATACCTCAAA 1468518 30 100.0 35 .............................. TATGATAATGTGATATAATATAGGAAAGGTTGAGG 1468453 30 100.0 35 .............................. TCTTTTTTAGATATTGCATTTTCCCATGTGCCGCT 1468388 30 100.0 34 .............................. CATAAATACCCTAATAAATCGCCATACCTCTCCA 1468324 30 100.0 37 .............................. AGGATTATTGGCAATACTAGTTATAATAGGAGATATC 1468257 29 86.7 0 ...A............T.-..........A | T [1468242] ========== ====== ====== ====== ============================== ===================================== ================== 8 30 98.3 35 GTTGAACCTTAACATAGGATGTATTTAAAT # Left flank : AAATGTATATACTAGAACTTAAAATATGGAGAGGGGAAGAATATCACAAAAAAGGACTAAAACAGCTTGGAGAATACTTAAATCAGTACGGATTAGAAGAAGGTTATCTTTTAATATTTGATTTTAGAAAAGCTACAAATTTAATAGGTAAAACTGAAGAAACCCATGTAAATGCAGAAGATAATATTAAAAAGATAATAGAGGTTTATTGCTGAGATTAGTTATATAAAAAAGAAATAGAATAATAAACTAAAAGCTCTCACATGATGGGAGCTTTTAGTTTTTTAACTTATAGTGTTATGTGATAAAATATAAATAAAAGTTTTCCCAGGTGACTTCAAATGGAAGTATAGCTTAGAGTGTTGATTTATAAGAGCTTACATACTATTTTTAAATGTAATTTTTCAAAAGTTAAATCGCCTGGTAAATTTTTATGGAAATGTTGAAATATCAATGGTTTTATGGTATTCTTAATTTTAAGAAACCTTGATTTTACAGTG # Right flank : ATAGTTTAAATTGTAATAGTATACTTAACCATAACATGAGATGTTTAATAAAATAATATTATGGAAAAGAGATTTATATTTTAGATCTAATTATTAAATTCAATAGTATAAATTGTAATACTCTTAGAAATAATATATGTATAATCACAATAAAATAAATATAAAAAATAATGTTAATGTACTATTATGGAAACAAAAGGATGGATAAAAATGAAGAAAAAATTAAGATTCTCTATTTCAGCAACTTATGAAGATTTAAAAGAAAAAGAAAGGATAGAAATTGATGATATCATTTATATAATTGAATTAGTTTCAGTTATTACATTAATTTTAAAAATCTTTCAATTCATAAATTAAAAGATATATTTTTTTTAAATCCTTTATACTATAGAAATATAATTAGTGTTATAATATGGAATAATATAAAATATTATGGTAAAATATATATTATAATGAAGATATAAGGAGGTGAAAAAGTGAAAATATATGAATTAACATTA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCTTAACATAGGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.20,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [83.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 7 1471105-1470686 **** Predicted by CRISPRDetect 2.4 *** >NZ_UFXG01000001.1 Clostridium tetani strain NCTC539, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 1471104 30 100.0 34 .............................. TAGAAGAATTTTCTTTTTTAAATACATCCAGAGG 1471040 30 100.0 34 .............................. AATTAAGAATTGTAGCCAGTATAGATTGTATTTA 1470976 30 100.0 36 .............................. AAATACACCTGTTGAAAACTACCTTCCCCACCTTCG 1470910 30 100.0 35 .............................. TCACTTGTATAGATAATTTGACCTTGTTTTTCATC 1470845 30 100.0 35 .............................. GAAAAAATATACAATCATTCAAGATAAAAAAGAAC 1470780 30 100.0 35 .............................. TCTTTTGATTCCTGATCTATGCCTATATATTTGAG 1470715 30 96.7 0 .............................A | ========== ====== ====== ====== ============================== ==================================== ================== 7 30 99.5 35 GTTGAACAATAACAAGAGTTGTATTTAAAT # Left flank : TACTTGTTAAACAAGTTGAAACTTATGAAAATAGAAGATTAGAAGTTGCAAAAAGTATAGTGGAGGCTATTGGAGGTAATATATACGAGCTGTTATATCATTATTATAAACATGATAAAAAATCATAGCAAAATAAACTTGAAAAAAGCCAATGATATAAAACAAATAATGCAAGTGGAAGGGGAAACTTGGCAAAGATTTTATGGCGAATTTAAAAATATACTTCCAGAGGAATTCGTTATGAATAATAAAGTTTATGATGAAGAAATATTAGGAAATCCATACAGTTGTACAGGGGAAAACTTGATATTATAAATAAAAGTTTTACCAGGTGATTTTAAATAGGAATATGCTCTAATATATTGATTTATAAGGGTTTATATCCTATTTTGAAATGTAGTTTTTCAAAAGTTAAATCGCCTGGTAAATTTTTATGGAAATGTTGAAATATCAATGGTTTTATGGTATTCTTAATTTTAAGAAACCTTGATTTTACAGTG # Right flank : TATATATTAAAAAAACTTAGCCATGTCTTTTAAACCCATGATTATTCTGTCTTAATATCTTGTTCTATGGTAATATAATAGGGTAAGGAGAGTGAAAGTTATATGAAAAAAAGATTTAATGTAACTGGAACCTGTATACCAGAAAGACACTATATGGTAGATATATCTAATAAATTAGATAGCATATTAAAATTAGTAAATAATGAAGAATATTTTATTATAAATAGACCAAGACAGTATGGGAAAACCACTACTTTATATTTGTTAGAGAAAAGACTAAATCATATGAAAGAATACTTGCCTATAAAAATAAGTTTTGAAGCTATAGATACAGAGGGATATAGTAAAGTTGAAAAATTTTTAAGTAGTATAATGATGCAAATAGTGAACTATTTTAGATTTTCAACCAATAAAGAAATGTATAAATTTATAAAAAATCGTGAAAATCAAATTACTAATATGAATGATTTTAATAGTTTTATAACAGATTTAGTTGAGTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAATAACAAGAGTTGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 8 1474917-1474626 **** Predicted by CRISPRDetect 2.4 *** >NZ_UFXG01000001.1 Clostridium tetani strain NCTC539, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 1474916 30 100.0 37 .............................. ACTTACCTTCCAAAGTAAATACTGGTAGCTTAGGTCT 1474849 30 100.0 36 .............................. CTTCTTTTTCTAAAATGCCTATTATTAGCAATTTTA 1474783 30 100.0 34 .............................. TATTTTAAAGCTGCTGGTATAGTAATAGGGTTGA 1474719 30 100.0 34 .............................. GCAAATTTTTCTAAGTTAATCATTTTAGCCATTA 1474655 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 5 30 100.0 36 GTTGAACAATAACAAGAGTTGTATTTAAAT # Left flank : ATATAGTTGAGAAGAGAGATATTTTAGAGTTAAAAAAACTAAATGTAAATGAACATCCTTTACTTGAAAAGGAATTAAATTATAAATATGCAGATGAAAAAGACAATGTGCGATATTATATGATAAAGTATGATATTAAATTTAAAGAAAATATGGCTACACCTATAGATTCAGGAGTTTATTATGAAGTTATTACAGTAGTAAAACGTAAAAATAAATGGCTAGTAACCACTGGTATGCATAAAGCATCATTTCATAATGATAAGCTAACAATAGATAGTTAGAGAAAATTTATAGAAATCTGTTAAATAAAAGTTATAAACTTTTCCAGGTGATTTTAATTATAAATGTATCTTAAAGCATTGATATATAAGGGATTAAGTGGTGCTTTTAAAGGTATTTTAAAAAAAGCTAAATCACCTGGTAAATTTTTAGGAAAATGTTGAAATATCAATGGTTGTATGGTATTCTTAATTTTAAGAAACTTTGATTTTACAGTG # Right flank : CAACTAATGATAAATTAGTAGTGTTTAACACTGCTGATAGTGAAATTTCAGAAATTATAACGGCAGCTATCCATGACTCTAGTGGCATAGGTTCAGAAGATACGAGTTCTTTAAAATTTATGATTTTAGAAGGGGATTGGAATAATAAAGAAATTCCACAATGCTTTGAAGGAATTAAGTCCGCAGGTGAAAGTGGTAAAATACAAGTTTTAAGTAGAGGTAAAAATTTATTTACTAAAGATAGTATTTATTATTTAAACGTAGTTACAGGTAAGACTATAAGGAATCCAAGTAAATTTGTTAGTTCTTCTATTGCAGTTAAACCCAACACAAGTTGTATGTAGTAGTATTAACGCATTAGAAGGAAATGTTGTAGATATTGAAAAAGAATTAAATGCTAAAGCTAATCAAGAAGATTTTCATAAATTGGTTAAATTAGATAAACATGCAGATAGTATAATTAAGTTTATTTCTGAGCTTAATTGTACAGAATCCTTATC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAATAACAAGAGTTGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [75.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA //