Array 1 38135-39699 **** Predicted by CRISPRDetect 2.4 *** >NZ_LEIF01000019.1 Pseudomonas aeruginosa strain Pae_CF67.10g CF67.10g_contig_20, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================================================== ================== 38135 28 100.0 32 ............................ TGATCAAGAAGAACCCGATGGCGCCACTTGAG 38195 28 100.0 32 ............................ ATCCTATCGACGACAAAGTGCTCGAGCATCTC 38255 28 100.0 32 ............................ TGCCGGACCTGCTCCGCCACTGCGGACTCCAA 38315 28 100.0 32 ............................ AGAAAGCCAAGATCTACCGCTGGAGAAAGGCG 38375 28 100.0 32 ............................ GAAGAACATCGCTGCGGCGATCTGGGCCTCGC 38435 28 67.9 72 ...................NNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNTATAGGCAGCTAAGAAAAGGAAACCAGAGCAGGAGGATGGACTATGACC 38535 28 100.0 32 ............................ GAGAACGATTCCGTCTTGTTGGAGCTTTCTGT 38595 28 100.0 32 ............................ CGACGAGCAACTGCGCTTGCGCGTGCGTAACC 38655 28 100.0 32 ............................ GGAAGGCTGGCGCTCGAACGGATGTGTACAGG 38715 28 100.0 32 ............................ TCCGGATCACCAGGGCGACAGATGGCCACCTC 38775 28 100.0 33 ............................ CTCTGGCGGTAACCTTCCATGATCTGCGCAGCC 38836 28 100.0 32 ............................ TGCATGCACATCGGCGAACTGCTGACGTGCTT 38896 28 100.0 32 ............................ TGGCGCCGCCCGATTTCACGTAGCTGCTCGAT 38956 28 100.0 32 ............................ TGATATCCAGCTGCTCCAGGAACCGCTGGCGG 39016 28 100.0 32 ............................ TGATTTCGAAGGCCGCGGGCGACTGATCCGGA 39076 28 100.0 32 ............................ TCCTTGCCGGGCGCGGCGGCGAGCAGTTCGCG 39136 28 100.0 32 ............................ TGTCCGGTCCCGGAAAAGACCAACGCGGGAGT 39196 28 100.0 32 ............................ TCTACGAGCAGACCGAGTTGAAAGGACAGGAG 39256 28 100.0 28 ............................ GAGTGTGAGGCCGGGCAAACGGATTTGT 39312 28 100.0 32 ............................ TTGACGGCCAATGCCGGCTTCGACTTAGCTCG 39372 28 100.0 32 ............................ TCTGTCACCTCCTGGGAGGCGGCCTCGGCCTG 39432 28 100.0 32 ............................ AGCCACTCGCGGGCCAGCTCGGGCGATAGCAC 39492 28 100.0 32 ............................ GTGTCGCCCAGCACCGTTCAGCGCTACTTCAT 39552 28 100.0 32 ............................ TGCAGGTCATAGGCGTATTCGAAGGACAGGCT 39612 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA 39672 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ======================================================================== ================== 26 28 97.7 34 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTGGGGTGGATTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATAAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGC # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [9-8] Score: 0/0.41 # AT richness analysis in flanks prediction: F [48.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 49923-48574 **** Predicted by CRISPRDetect 2.4 *** >NZ_LEIF01000019.1 Pseudomonas aeruginosa strain Pae_CF67.10g CF67.10g_contig_20, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 49922 28 100.0 32 ............................ CAAAGCTCTGGTGTGGTTTGCTCGCACTCAAC 49862 28 100.0 32 ............................ GTCTCGCGCACATGCGGAAACCAGCCGGCACG 49802 28 100.0 32 ............................ GATTCGGGGAACTCAAGCCGCTTGCTTTGCAT 49742 28 100.0 32 ............................ TGCTGGCGCTGATCAGTTGGAAAGGGCTTGCT 49682 28 100.0 32 ............................ TTCGAGGCCGACATGCTCGACCGCAGCAAGGT 49622 28 100.0 32 ............................ AATGGCAGCAGCGCGAAAAGCTCGCGGAGTTC 49562 28 100.0 32 ............................ TCGCCGATCAGCAAGATGGAGGCTTGGCTGGA 49502 28 100.0 32 ............................ CAGACCGGCATCGAGGCGCGTCGCGGCCATCG 49442 28 100.0 32 ............................ TGGAAGAACGCACTTGGACGGTCAGCATTGGC 49382 28 100.0 32 ............................ ACTCTGCGCCAGAGGTCAGCACCAGAAGATCA 49322 28 100.0 32 ............................ TATAACGATATTGATGCCGGATTTAGGCCAAG 49262 28 100.0 32 ............................ AGGTAGACGTCCTCGCCCACACCGATGTCGCG 49202 28 100.0 32 ............................ GTCCAGGCACGTTTGCTCGCGCTTTGATCTCA 49142 28 100.0 32 ............................ GAAAAGAGTTGACTGCACAGTGGGCATCACCT 49082 28 100.0 32 ............................ AATTGCAGGTGACCGACAGGCTTGCGGTACCA 49022 28 100.0 32 ............................ TTCTGCGCAAGTTGTTCCTCGGACATCCCCGG 48962 28 100.0 32 ............................ AGCTCGGTCGCCCCGGGGCGGCCGGCGTAGTA 48902 28 100.0 32 ............................ AGGTCGGGGATGGATCGAACCACCCGCGCGAC 48842 28 100.0 32 ............................ GTGCCCGGGGCCGACTCCGAACCCGACGAGCA 48782 28 100.0 32 ............................ TTGTCGCTGATATCGAAGGTGTCCCACTTCCG 48722 28 100.0 32 ............................ AGTAGCCGTCGGCGTTGTGACAAAGCCATTCC 48662 28 100.0 33 ............................ GCACGGTAGGTGCCGGCGCCCACGCCGGAGGCT 48601 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 23 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTGGCATCGCCCATCACAGGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGTAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCTACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 351782-352410 **** Predicted by CRISPRDetect 2.4 *** >NZ_LEIF01000004.1 Pseudomonas aeruginosa strain Pae_CF67.10g CF67.10g_contig_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 351782 28 96.4 32 .............C.............. TCCCTTAGCGCCTGAGCCTCGGCTTCGAGCTT 351842 28 96.4 32 .............C.............. ACGATGATCTATCAGACCTATCGTGGCTACGC 351902 28 96.4 32 .............C.............. AGGTTGACCAGCATGGCCGGCATCGACAGCGT 351962 28 96.4 33 .............C.............. ATGCAGCCAGGGCTTACTCCGCTGCTGCTGGAC 352023 28 96.4 32 .............C.............. TTGAGCTTGTCGTTGTACTCGTCGAGGCTCAT 352083 28 100.0 32 ............................ ACGTCGGAACGCAACTACCTGACCGCGTTGGT 352143 28 100.0 32 ............................ CGCAACGTTCGTGATCTGCCGTTCGCCGCCCA 352203 28 100.0 32 ............................ TCGGCGAGGCGATCGATCATGCGAATCAGCAA 352263 28 100.0 32 ............................ ATCGACCACGACAGTGCTTCCCTGGTCTATTC 352323 28 100.0 32 ............................ ATTGGCCGTGCAAGGTCCACCAGTCGATGCTT 352383 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 11 28 98.4 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACACACTTGTTCGACAACGCGAAAGTGCGCTTGAGATCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCACTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTTGCATCGCCCATCACAAGACCTTTCGCGCTCGAACGGCGAGGCTCACCGCCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTA # Right flank : ACTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATCCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACAGAAAACAGCTTGAGCAGCAAACATGAAGCCCGCTCGAACGTCCCGTAGGGCGAATACCGCCACAGGCGGTATCCGCCGATGCCCTGGAGAGCCGGCGGATGACCGCAAG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : GTTCACTGCCGTACAGGCAGCTAAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [0-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //