Array 1 686-382 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNIV01000025.1 Deinococcus marmoris DSM 12784 Q319DRAFT_scaffold00024.24_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== =================================== ================== 685 34 100.0 33 .................................. GCCCGCCTGCGTTCACGTGTGTGTGAGTCATAT 618 34 100.0 33 .................................. CATGCGCAACTCGAACAGGCGGGCGTGCAGCAG 551 34 100.0 33 .................................. CGACGTTGGGCAGTGCGACGGCCGTCTCAAAGG 484 34 100.0 35 .................................. TACTTCGCTACCAGTGCCTTCCCACCTTTCAGTCC 415 34 76.5 0 ........................TAG..AGCGG | ========== ====== ====== ====== ================================== =================================== ================== 5 34 95.3 34 ATTTCAACGGCCTTCCCTGTTAAGGGACTGAAAC # Left flank : CCAGCGCTGTGGCCAGCCACGTGACGACGGCCTCCAGATGCGGCGATGCCAGGAAAACGGCTGCACCGAGGAACATCAAAGTCACCGCAGGCTGGAGCCACAGCCACCGGCCTGGCCGCATGACCGTCTGCACGGAGACCACGACACCGTCTACCTGCCAATTTCCCTGCATGGGCTGCTGCATCCGTCCTCCTGAAGGGCCGTTTGAGGGCTTCCGGAAACAGACGCAAAACTAGGTGCCCAAAAGAACCTGTCTAGACAGAAGTGCCGACGATTTGCGAATTATACATTTTCTGGCGAAAAGGACGTGCTGGCGGGTGAATAGCCTGTTTTGGAAGCACGCCAAAAGGGCCATCGTCGGCACTGCCGTCCAGCACGGCAAAATCTGGTATCTTTGGAGCGTCGGAACACGCGAAAACCGGAATGGGATGAATAATCAGGGGTCATCGGCATTTTCGGCTCCGCGAACGACGTGCAGGATGACAAAAAAAGTAGGGGCC # Right flank : GGTGAAGAACTGGTCATATGGCGGTGCCCCAGTCGGCGTCAAGGACAGCCCGGCGAAGTTGTGTCTTGTTCTCGAAAGATCGCTCTGGCAAGTGGTGGTACTTCAGATTGCGCCACTCGCCCTCCATTGGGTTGAGTTCTGGGCTGTAGACCGGCAAATACACCACCATCAAACCACGTTCACGCCAGCGTTCTCGCTGCTCAGACACTGCCCGACAGGTATGAATGCTGGCCTGATCCACGAAGACCAGAGTGGGACAGACGGGATCGGCGTGCTGGGCCAGGGTCTCCAGAAAGCCCACGGTGTCTTGGCCGGTGGTATTGCCCTCAATCTCACGGTACTGGACTTCGCCACTGGCGAAGTCCACGACCCCCATCAGGTT # Questionable array : NO Score: 2.82 # Score Detail : 1:0, 2:0, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCAACGGCCTTCCCTGTTAAGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.94%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.90,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 86866-87169 **** Predicted by CRISPRDetect 2.4 *** >NZ_KL370780.1 Deinococcus marmoris DSM 12784 Q319DRAFT_scaffold00003.3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ================================= ================== 86866 35 82.9 33 ..A.C.C...........A.A...A.......... TTCATGACGGGAGCAGCTTTCCAGTCCACTGGA 86934 35 100.0 32 ................................... CAAACAAGCCGAGAAAGGAATGACCACGCGCC 87001 35 97.1 32 G.................................. AGACCGAATGTTTGCGCTGGACCAAGCCAAGA 87068 35 100.0 32 ................................... TGACGCTGCTCGTCGAGCTGCTCAGAATGGCG 87135 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ================================= ================== 5 35 96.0 32 TGTTTCAGTCCCTTAACAGGGAAGGCCATTGAAAT # Left flank : CTGATCATTGTGACTGAGTTGCCTGCTGGCACCGACTTCGACGCCAGCGTCCGGGAGCGCCAGGGCTACAAGTTCCAGCTGTATGTTCACAACGTGCGTGCCGCTGAGGCCAGGGCGCGTGGCCTGCGCGTCTTTCCAGACGACCTGCGCGGCCCATGATCCCCGGTCTGCACGTCGTGTGTTACGACACCAGCAGCGACGCCCGGCGCAGACGCTTCGTCGGCCTGCTGTCCCGCCGGGGCCGCCGCGTGCAGTACAGCGTCTTTGAGTTGCTGCTGGACGCGGCCCGGTTGCGCCGCCTGACCCGGCAACTCGCGGAGCTGATGGAGGACGACGACAGCATCCTGATTTACGCCACGTCCAGCACCCGTCTCTGCCTGGGCCGCGACGTTCCCGCCCTGGATGAGCAGCCGCGCACTCAGGTCATTTAAAGGCCCTTACAACACAGCAAAAAACAGCACGGACAGTCGACAAAGAGCTGTCCAGCCCACTTTATGCTG # Right flank : TGGCCAGCGGAACGCTGTCCGGGCCCATCGAGCTGGTTTCAGTCGTCTGTGATTAGCGGGTAAGGCTGATCAAGACCGCGACGGGATCCTGACCGCGCAACCGCGCGGTCTCCACTGTGGACTTGATGCGCATATACGTCTGCGCTCCGACTGCGTTCTTGCTGCACTGCGAGACCTTCCTCGCCATCACCACGGTTCGCAGGCTCCGTTCAGCCGCGTTGTTCGTCGGGGGAATGTCGGGATCCTTCAGGAACGGCCACAACCGATCCAGCACGTACTGCTTCATGATCCCCAGCCGGAGTCGCTCGTTCGCTTTCGACTTCAGCGGTGCCCGGTTCAGCAGGGCGTTCAGGCGCAGCGTGAGTCCCTCACCCTGCTGCACGTACTCCTCCCGCGTACACCCACCCGTCGTCACGTCCCCGTGCAGTCGGATCCCATCCCGGAACACCTGTGCCACCCGCTGTCCGTACACCTCCCCGCGCCCAGGGCGGCCCTGCTCC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:0, 3:3, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTTTCAGTCCCTTAACAGGGAAGGCCATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.90,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.78 Confidence: HIGH] # Array family : NA // Array 2 88698-90567 **** Predicted by CRISPRDetect 2.4 *** >NZ_KL370780.1 Deinococcus marmoris DSM 12784 Q319DRAFT_scaffold00003.3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ==================================== ================== 88698 34 97.1 34 C................................. TCTCAAGACGCTGCGCCTCAAGCGCAGGCGTGAT 88766 34 100.0 34 .................................. CATCACCGAAAATCGGCGACTGAATGCCCGGGAA 88834 34 100.0 35 .................................. CTGGGGTGGTCGCAGCTAAGCCACGACAGTTCTTA 88903 34 100.0 34 .................................. GCTGTTGATCTTTTGTCGTTGGCCGCGCCAGTGG 88971 34 100.0 36 .................................. CTGTGGAAGCGGTCATAGGCCAAAGGATTTTCCCAA 89041 34 100.0 33 .................................. GCCCTGATCTGCATTTTGGACGCGCCTGATGGA 89108 34 100.0 34 .................................. GGGGGAAACCATGAGACACAGGGAGACAAATGGG 89176 34 97.1 34 ..C............................... ATCCCCGGATCAGCGTGAAAGGACTCACCAAAGA 89244 34 97.1 34 ...........C...................... GCAATTGCCAAAATCGTTGCCACCTTTTCTCAGT 89312 34 100.0 35 .................................. CTCTCGGCCTGGTTGATCCCGAACACGGCACACAG 89381 34 100.0 35 .................................. ATCCAAAGTCCGCCCCTCCAACACCCTCACCGAGC 89450 34 100.0 33 .................................. GTAGACTGGGACATGACCTTGCCGCGCCCCCTG 89517 34 100.0 34 .................................. ATAATGTTTGCCGTCATCTGCCTCGCCCTCGCTT 89585 34 100.0 34 .................................. TACAAAGAAACGATTTGTTCATCACGGGCGTCAA 89653 34 100.0 33 .................................. CGGCGTGCTGGTGATCTGGCGCAACGAGGACGG 89720 34 100.0 33 .................................. GCAAGGTGAAGCACTACAACGGACTGGCAAACG 89787 34 100.0 34 .................................. TTGTGGAGACCGTCGGCCATCTGGCCATTATTCT 89855 34 100.0 34 .................................. ACATCCGCGGTCTCGGTGCCAACATCGGGCTGAT 89923 34 100.0 33 .................................. TTCTCATGGGCCGAAACGCTTACGAAAAGATCG 89990 34 100.0 33 .................................. TTCTTAAACCCCAGCTTGGACCTCCTCGGTAAA 90057 34 100.0 32 .................................. TCCGAACTCGGCGTCCTAAACGTGATCATCCC 90123 34 100.0 36 .................................. AAAGGCTGGATGACATCTTGCCGTGGGGAACCATTC 90193 34 100.0 35 .................................. TCTGGCCTCAACCCAATGGGCGATCAAGCACAAAG 90262 34 100.0 34 .................................. GATGACATGAACCACATCAAGCCAGTCCGCCTGA 90330 34 100.0 33 .................................. ACCGAAGGATTTTCCCAAACGGGAAAAGACCAT 90397 34 100.0 33 .................................. CCCGGCTCACCGACGACCAGACCTTCACGCGCG 90464 34 100.0 36 .................................. TTCAGGGCATCACCACCGAGATAGCCGACTTCCTGG 90534 34 100.0 0 .................................. | ========== ====== ====== ====== ================================== ==================================== ================== 28 34 99.7 34 GTTTCAGTCCCTTAACAGGGAAGGCCATTGAAAT # Left flank : GGTGACATTGGGGGCAGGCCATGACAGGCACGTGATACTCGGTGACCTGCGTAGCGTTTTGAGGGACGAGTTCCGTGACCCAGGCCTTGTCGTGACGGGTGAAGATCAGCGGTCCCGTAAACCCGCAGCGAGGACAGGTGTTCGGCGTGGCAACCTGCACGGTTTCGGTGACCTGTTGCGGCGTGGGTGGAGACTTGTGCGCGAACGGGCCTTCACCAGGACGGCGTCCTGGTGGTTTGGGATCAGCGGTGCGCGTCTCCCGGCTGAAGGGTGCGGCGTACTTGCGAGCACGTCGCTCCAGCTCCTCGATGCGCTTCTTGAGGCGGGCGTTTTCAGCCTGAAGCGCTTTGTTCTGTGCGATCAATTGATCAATCTGCTCGGACTGGCGACGGATGATCTCGAAGAGATCTTTCTCAGTCACCTTCGAGCCCATGGCTCCCATCGTAACGGGAAGGGTGCCCGACTGGAAGCCGGGCACTCAGGGGGCCGCTAATCACAGA # Right flank : TAGCCCCTACTTTTTTTGTCATCCTGCACGTCGTTCGCGGAGCCGAAAATGACGGTGACCCATGATTATTCATCCCATTCCGATTTTTGCGTGTTCCGACGCTCCAAAGATACCAGATTTTACCGTGCTGGACGGCAGTGCCGACGATGGCCCTTTTGGCGTGTTCCCAAAACAGGCTATTCACCCGCCAGCACGTATTTTTCGCCGGAAAATGTATAATTCGCAAATCGTCGGCATTTCTGTCTAGACAGGTTCATCCCGGCGAGAGCGGCTGCCCTGCCGGATCTCTTGAAGGTTCACGGTTTCGCTGACATGAAACGTGCCGGGGATGCCTTCTGGGTCTGGACGAATGACGACCAGACCTGGGAAGTAGCCGCAGCGTCCGTGCAGGTCTGCCAGCAGACACGCAGTCAGCGGCGCGAGTCCGGGGACGATCAGCAGCAGGGGGCGCGTCTGCCACTCTTCAGAGGTCAGGTCCGCGCGGTCCAGCAGGCCACGGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGTCCCTTAACAGGGAAGGCCATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.88%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.90,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.78 Confidence: HIGH] # Array family : NA // Array 3 99215-98386 **** Predicted by CRISPRDetect 2.4 *** >NZ_KL370780.1 Deinococcus marmoris DSM 12784 Q319DRAFT_scaffold00003.3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ============================================================================================================================================ ================== 99214 34 100.0 34 .................................. GTGGGCGGGTGTCCTGCTTGGTGTGCTGTGTCAT 99146 34 100.0 33 .................................. CGCTTCCTGGGGCTGTCTGCTCCAGGTCACGGC 99079 34 100.0 33 .................................. GCCATTCCTGCTCGCGGTACAGGGCGGAGTCAG 99012 34 100.0 34 .................................. TCAGGCGGGGTTCGCTTCCCTTGCCCAGCGTGTA 98944 34 100.0 36 .................................. TTGTCATTCAACACGCCGTCGTACCCGATGTGGTGC 98874 34 100.0 36 .................................. CCAGAATCCACGCACTGTCGGGTTCGCTCAGGTATT 98804 34 100.0 34 .................................. GTGATACTGGGGGCGGTACTTGATCCCCGGCGAT 98736 34 100.0 39 .................................. CTCGTTCAGACCTACGGCTTCAACGCGCAGGGCTGCCGC 98663 34 100.0 34 .................................. CGGTCAGGCATAAACGGAGCGTAATTCTGGACAG 98595 34 100.0 140 .................................. ACCGTCCCCTGAAGGGCGTACATCTGCTTCTCGGTGGTATGCCAGAACGGCTGTCCCATCGGCTGCGTTCCGCTGGCAGCGGTCAGCACGGGGAGGACACTGCCCGCATACGTGCCGCTGTCGTTGCCCCCCGGATCGCA 98421 34 73.5 0 .......T...........C..TT.A....CGTA | C,T [98388,98391] ========== ====== ====== ====== ================================== ============================================================================================================================================ ================== 11 34 97.6 45 ATTTCAACGGCCTTCCCTGTTAAGGGACTGAAAC # Left flank : CGAGTGCGTTGCCAGCTCATCCCGGCATGGTGCAACCTTGTGCGCATGGCGGTACGCCCCACGGTGATCCCATACCGCTCGAACACGTAAGCCACCAGGCTACGAGAATTCCAGACCTGTTGACCTGCGGCGATCTGCCGCCCGACATCGGCCATGATGTCGGGCGGCAGTGGGCTGGTTCTTCCCGGATGGACGCGCTCGAAGAGCGCGTCCAGGCCGCCTTGGCGGTAGAGCGTGATGACCTTACGCACACTGTCGGCATTCATGATGCCCAGTCCCTCAATCTGTCGGGATGAGCTGCCAAGATGAGCGTGCCACAGGGCAAAATAGCGCTTGCGTTCACAGGGCAGCACGTCACGGGCGAAGAGCAGGTGTTCAAGCTCCTCAGCGTCTTGTGGGGTCAATTCTGGGTCAAGTCGTCTGATGCCGGAGTCTACACCCGCTAGCTACTTAAGGGACTGAAACTGAAATCCACAGCATGATGACCGTGATGGTCATTG # Right flank : ATTTGGGAACAGCTTACCCTGCAGCCATGCCACAGATTTGGCAACCTGAAAGGCTGACCCGTTCCCAACTGGAGGAACGGCGTTTGTTTGCGGAACCCTACATCCGAGAGGACAAGCTCAGTTCCGCACAGCTCGCTGAGCTCTGCGGCGTAGGTTCCAGCACCGTCCGAAAATGGCGTCAACGACTGCGTGACCAAGGTTCACTGGAAGCGACCTTTGCCTCAGGCCCGCCCAGACGTCTCCCGGATGAGCAGATAGCGGATGTGATGGCGCTGCTGCAAGCAGGACCTGATCCACACCTTTACCCCGACCAACGCTGGACCTGTCCCCGAGTGCGGAAAGCCATCGGCCTGAAATTTGACGTCTGGTACCACGTGGATCACCTGAGTCGCTTGCTCCATGCATGGGGGTTCTCACGGCAAAAACCGACGAAGCGGGCAGCAGAACAAGATCAAGAAGCGGTCATCGCTTGGATCGAAACCGTGGTGCCTGAGCTCGAA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCAACGGCCTTCCCTGTTAAGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.94%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.90,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA //