Array 1 669337-670029 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JAENDF010000001.1 Staphylococcus pseudintermedius strain DG040 contig_1_segment0, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
    669337	    36	 100.0	    29	....................................	AAAATTAATGCACGACAGCGTTATAGAGG 	
    669402	    36	 100.0	    29	....................................	AAACCAGCCGAACCTTTTCGTACCCAATT 	
    669467	    36	 100.0	    29	....................................	AATTTACTGAAAGCAGTGAGTAATATTGC 	
    669532	    36	 100.0	    30	....................................	ATCATTTCCGGCTTATTACCTTCGCTGATT	
    669598	    36	 100.0	    30	....................................	GACATATTACAGAAAGTGAAAGAGGTGCTG	
    669664	    36	  97.2	    29	.T..................................	TAAAATCAGAAACAAAAGGGCAAGCGGTT 	
    669729	    36	  97.2	    30	.T..................................	CTAAACGATGACATGACTATGACATTAATC	
    669795	    36	  94.4	    30	.T..........................A.......	AATGCACGTGCTGTTATGGTGAAAGGCTAT	
    669861	    36	  91.7	    30	.T.........T................A.......	CGAAAGTAAAGATAGTATGCAAGGTGCAAG	
    669927	    36	  94.4	    30	.T..........................A.......	GTTATGATGTTTGGCGATATGGGTCGTCGT	
    669993	    35	  80.6	     0	TT.......T................-.CA.C....	|                             	TC [670026]
==========	======	======	======	====================================	==============================	==================
        11	    36	  96.0	    30	GCTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC	                              	       

# Left flank :   TTTTAATTATATTATTTCCGGAATCACATCTTGGCATACACGATATTAAAAAGTTTATACACCTTATAAAGAGATATAAATTTACCACGATTATTTTTACTAATCATCCTTCTATCATTATTAACGAGGAAAACATATTTCTTTGTAAAAGTAATAAGAAGTGCCACGACATCGAAAAAATATATGAAGAATTAATGTTATTTGTTCCTGAAGAAGTAGTGAGTCATCAATTAGTTAACATGATTGCATATCACGAATTCGTTGGTGAAAACCTTTCCGAGTATGAGCGATATTTTAAGTTTATCAATCATTACAATTAGGCTATACTATATTTAACATTATATGATAGAGAAAAGTTGATCCAACGATGAAGTAATGACTATGTGACTTCATTCGTGATGAAGAGGGTTAACTTTATCATCGAGTATCATATCTGACTTCTTTTAATAGTGCCAAGCCTCAATTTTGAAAAGGATTGAGTCAATGTTTTTGGTTTTGAG
# Right flank :  CCTTCTTTATAATCGTACATCAACCTCACTATGCTTTCAAAATAATTAAGAGGCATTGTGGGCTTTTTGTGTTTATACGAAATGTTGTATGAATCTCTCAATCGTGCCACCATGTTATAATAGGTATAAATTGTTCATAAAAGATAAATAGAAAGTAGGGGAAATCTATGGAAGCAATTATTGCAACTCAACCGTTCCAATTAGCAGAAGGTCAAAAGTTTGAAAAAGTATCGCGTGAGCTCCCAACACCAGAGGCGCATGATATTTTAATCAAAGTGTACGCAACAGGGATCAATCCGGTTGATACGAAAATGCGGCAAGCCCCGTTAAATGCTGAGGCACGTGTCCTAGGTTTTGATGCGGCAGGTGTGGTTGAAGCGGTCGGCGATGCGGTTACGGATTTCAAACCGGGTGACCGAGTATATTATTCAGGATCGAATCAACGAGATGGCTCAAATCAGACGTATCAGCTCGTGAATGAAAATTATTTAGCGCATATG

# Questionable array : NO	 Score: 5.85
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.79,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GCTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC
# Alternate repeat :   TTTAGCACTATGTTTATTTAGAAAGAAGTAAAAC

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:73.53%AT]
# 	Reference repeat match prediction:         F [matched GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [-0.20,0.00] Score: 0/0.37
# 	Array degeneracy analysis prediction:      F [0-11] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [65.0-68.3]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.91,0   Confidence: HIGH] 

# Array family : II-C [Matched known repeat from this family],   
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