Array 1 4107-3938 **** Predicted by CRISPRDetect 2.4 *** >NZ_MCAD01000064.1 Neisseria meningitidis strain Nm287 Nm287_scaffold_66, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================== ======================================================= ================== 4106 21 100.0 55 ..................... CCTAAAATCTCGTCATTCCCGCAAAAACAGAAAACCAAAAAACAGCAACCTAAAA 4030 21 100.0 51 ..................... GGAATCCAGTCCGTTCGGTTTCGCTTGTTTTAAGTTTCGGGCAACTTCCAC 3958 21 95.2 0 ..T.................. | ========== ====== ====== ====== ===================== ======================================================= ================== 3 21 98.4 54 TTCGTCATTCCCGCGCAGGCG # Left flank : CTGCGCGGGAATGACGGTGGGGGGATTTCTGTTTTTCCGACAAATTCCTAAAACTTAAAGTTCCGTTATTCCCGCGAGAACAGAAAACCAAAAACAGAAACCTAAAATCTCGTCATTCCCGCGCAGGCGGGAATCCAGTCCGTTCGGTTTCGCTTGTTTTYYGTTTCGGGRAACTTCCACTTRGTCATTCCCGCGAAAGTGGGAATCCGGTTCGTTGAGTTTCAGTCATTTCCGATAAATCACCGCAACATTAAATTTCTAGATTCCCGCTTTTGCGGGAATGARGGCGGAGAGGGTTTGTTGTTTCGGATAAATCCCTGTAGTTTTTCGTTTCTAGKTTCCCGCTTTTGCGGGAATGACGGCGGCGGGATTTCTGTTTTTCCGACAAATTCCTAAAACTTAAAATTTCGTTATTTCCGCGAYAACAGAAAACCAAAAARAGAAACCTAAAATCTCGTCATTCCCGCAAAAACAGAAAACCAAAAAACAGCAACCTAAAA # Right flank : GGAATCCAGTCCGTTGAGTTTCAGTCATTTCCAATAAATCACCGCAACGTTAAATTTCTAGATTCCCGCTTTCGCGGGAATGACGGCGGAGAGGGTTTGTTGTTTCGGATAAATCCCTGTAGTTTTTCGTTTCTAGATTCCCGCCTGCGCGGGAATGACGGCGGAGAGGGTTTGTTGTTTCGGATAAATCCCTGTAGTTTTTCGTTTCTAGATTCCCGCTTTCGCGGGAATGACGACACGGGAAATCTTATTTGAACCTACTATCTTAATCGGCTGCAAAATGCCGTCTGAACGGGTTTCAGACGGCATTTCTGTTTATGCGAAATCGCCCCAAAGCGTCTGCATGGCGGCGAGGGCGGCGAGTGGGGCGGTTTCTGTGCGTAAAATCCGTTTGCCGAGTGTAACCGCCTGAAAGCCAGCTTCAAATGCCTGTTGTTCTTCCTGTTCTGTCCAGCCGCCTTCGGGCCCGACCATAAAGACGATTGCGCCGGACGGGTGGC # Questionable array : NO Score: 3.51 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:-0.5, 7:-1.00, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTCGTCATTCCCGCGCAGGCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 35462-37489 **** Predicted by CRISPRDetect 2.4 *** >NZ_MCAD01000075.1 Neisseria meningitidis strain Nm287 Nm287_scaffold_76, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 35462 36 97.2 30 ........G........................... GGACGGCGGTTCTAAAATATGAAAACTCAA 35528 36 100.0 30 .................................... TATCATGATGAGCATATTTATGAAGAGGTA 35594 36 100.0 30 .................................... CTGGAAGACTGGTAAGAAACGAGATGCACA 35660 36 100.0 30 .................................... TAATTTGCGTTTCGTGTCGCTCATAAACCC 35726 36 100.0 30 .................................... CGTAACCGGCAAGGCTTATTTGTCCAACGA 35792 36 100.0 42 .................................... GCCCACACGCCGCCTAGCACGCCGCCTAGCACGCCGCCGAGA 35870 36 100.0 30 .................................... ATAAATCAATACCGTGAAAACCTCATGTGT 35936 36 100.0 30 .................................... ATTTATATTATTTTTGATTTTGATTTTTTT 36002 36 100.0 30 .................................... CTGAAAGGTAAGGAACGGGCGGCTTGTGAG 36068 36 100.0 30 .................................... ACGGCTGCCGCAACGCCGCCCGAAACCATC 36134 36 100.0 30 .................................... GAGCATCTATTAGGGGTGAAGGTAGATCTT 36200 36 100.0 30 .................................... ACAAATCAATACCATGAAAACCCCATGCGT 36266 36 100.0 30 .................................... AGACTTAGCACGTTTAACTTGCTTAACAAG 36332 36 100.0 30 .................................... CAAAAACTTTTTAGGGGGGTCGAAAAATAC 36398 36 100.0 30 .................................... CAAAGCTATAAACACGTTTATCTGTTGTTA 36464 36 100.0 30 .................................... ATGGGGTATGCAATTACATCGCTTGGGTTT 36530 36 100.0 30 .................................... AAATTATACCAATGGCGAAAATCTCGGGCG 36596 36 100.0 30 .................................... GCTCAGTTGGAACAATGAATACATCTTGAA 36662 36 100.0 30 .................................... ATAGGTTCTATTAATACGTCTTTCGTCTTC 36728 36 100.0 30 .................................... TTTTCCAGCGCGATGAGATACCCGGCATAG 36794 36 100.0 30 .................................... CTTTTGCCGCCATCGACGCAGCCGACAGGG 36860 36 100.0 30 .................................... ACTTAATTTATTCAGTTCTTCTTTATGCCA 36926 36 100.0 30 .................................... TTCGTACCCAAAAAATCGACCGCGTAACGG 36992 36 100.0 30 .................................... ATAAATTTGTGTCTGCGTTATTCATTTTAG 37058 36 100.0 30 .................................... ATAAAAAATCGAAAAAATCAAAAATACTAG 37124 36 100.0 30 .................................... CGAAGCAGGAAGACGAAATCAAACGGCACG 37190 36 100.0 30 .................................... CGTTTAAAGACAGATAACCGGATTCGCGTT 37256 36 100.0 30 .................................... CCGCAACCGTCTGCACCGTAAATGTAATCA 37322 36 100.0 30 .................................... CATGGCGGTCGTCATATGGGGGTTCCTTCG 37388 36 100.0 30 .................................... TGGATAGGCGTTCCGCAGCATCAGCAAGCC 37454 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================== ================== 31 36 99.9 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : TACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATGCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //