Array 1 530-23 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAITT010000048.1 Enterocloster aldenensis strain MSK.1.17 NODE_48_length_44777_cov_132.661, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 529 33 100.0 33 ................................. CTTTGGTCTGATCTTTACCATTACGTATCTTTG 463 33 100.0 35 ................................. CTTCCTTTATGCGGAGGATATGCTTCCGGACAATC 395 33 100.0 34 ................................. CTTGATATACGCACTGAGCGTTTCAATTTCTTTT 328 33 100.0 36 ................................. TCGTAAGAATCCTTGAGGGCATCCACCCTGTCTATC 259 33 100.0 34 ................................. AGCCTGGCCATGGAGAACCCGTACAGGAATTAGG 192 33 100.0 36 ................................. CCCGGTGTGGGATATCTGGTATCCGCCCAACGGAGT 123 33 100.0 35 ................................. AAGGTCACGATTGACACAACGGTTAGTGAATACCC 55 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 8 33 100.0 35 GTCACAGCCTGCGAGGGCTGTGTGGATTGAAAT # Left flank : CCTTTAGGGACATTAGGCGTATATCCATTTTGATACAGAGAATAAAATTTTGAAAATAGGGCGGGTTATATCTGATATGCAGTGCATGTGAAAAAGGAGGGTGAATTGGCGGGTATCATGGAGGATGTAATGGTTCCATAAAGAGAGATGGATTTGGAAATCATACTGGAGTGCAGACGCATAAAATAGACGGGAAGATGCTGGATTGGCTTTTATTTTGCGAAAAAGTTTTATATAATAATATACAGGATGGAGTTATTGTTTTATTGGGGATAGAAGAGTTGGGGCGTGCAGATGGCGGAAATGAATTTTCAAACATACCCTAGGGGCAAATGATGGTGCGGATCATGAGCACACATAAAATTCCTAGGGGATTCGCACCTAAAAAGCAGGGTGGAAGTCAGGGGAGCCTTCTTGGAACTAGAGTTTGTTAATTAAATATATATGCATTGTATATGATTATGTCTGTTAGAATGTGGTTTTTGTTGGGTATTATTGCT # Right flank : TCGTCTCCCCCCAAAGGTCCACG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACAGCCTGCGAGGGCTGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCACAGTCTGCGAGGACTGTGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.50,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [11.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 64530-62337 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAITT010000037.1 Enterocloster aldenensis strain MSK.1.17 NODE_37_length_64529_cov_143.279, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 64529 33 100.0 36 ................................. CGTCTCCCCCCAAAGGTCCACGAAGTATGGCAGACC 64460 33 100.0 36 ................................. CATGGTCGTATTGACATTACTGTGTCCCAGGACGGC 64391 33 100.0 36 ................................. TGTTGGATTTCCTATGCATGCGCTACCCATTGGCAT 64322 33 100.0 35 ................................. TAATTGTTGTGTTGACGGTACATCAACCGCATCCA 64254 33 100.0 34 ................................. GGATGCTTCACAACCTTCTGGTCATGACGTTACT 64187 33 100.0 34 ................................. CGCCAGGTCAGGATATACCTGGAGTGCGAACGGG 64120 33 100.0 35 ................................. CTCATACATCTTGTGTAAGATGCATAATAAATTCA 64052 33 100.0 35 ................................. TCCCTGGAAACAGGAGAAGGACTGTCCATTAATTC 63984 33 100.0 35 ................................. ATAAGCTGAGCGTGGTACTGAACATGGTGGACCAG 63916 33 100.0 34 ................................. ATAAAGGGTATTACTCAGAACTGTCAGACCTGGA 63849 33 100.0 35 ................................. ATCGATGCAGCCCTCCCGTCCGCCAGCAAGGCCGA 63781 33 100.0 33 ................................. TCAATATCCTTCTCAAGCATCCTCATTCCTCCC 63715 33 100.0 33 ................................. ATTGTTACTCCATGAATTATCTAACTCATATGG 63649 33 100.0 35 ................................. TCCGATTCCAGATGGACGTGTATATCCGTCCTGCA 63581 33 100.0 37 ................................. TTCCAGAGCAGGATAAGCCCGGCCGTCAGGGCCGCAA 63511 33 100.0 33 ................................. TACAATGCAGCCGATAGTCTGCTAGGTGTTAAT 63445 33 100.0 36 ................................. AACCTAACAGAAGACGGAGAAATAAATATATTAAAT 63376 33 100.0 34 ................................. ATGGATCCCCCTATGATATCCCCTGAAAAGAAAG 63309 33 100.0 34 ................................. GTATAATATGCCTGTCCATGATTCAGCGCATACA 63242 33 100.0 34 ................................. TCCCCTTGCTGGAATTTTTCAGTGAATCCGTTAC 63175 33 100.0 36 ................................. TGATAAGGCATCGGCCTGCCCAAATTGTGGCTGCCC 63106 33 100.0 35 ................................. CCCCGTGTAAGCAGCTGCCCCGTCATAGCCCTGTG 63038 33 100.0 34 ................................. TCAAAAGAACTTATTGAAGATGAATATATGGCCT 62971 33 100.0 33 ................................. CGTCTCCCCCCAAAGGTCCACGAAGTATGGCAG 62905 33 100.0 33 ................................. TCCTCGCCGCGCACGGATACCTGGTCATTGAAG 62839 33 97.0 34 ................A................ CACTAAGTCCTCCGCCGACTTAGAGAGGATGGTG 62772 33 100.0 35 ................................. TCTTCATTCCTCATCTTCCTCTCTCGCTCCCCAAT 62704 33 100.0 34 ................................. AGGTAATATATCTCCAGGATTGCCTCGTCAAAAT 62637 33 97.0 35 ........T........................ ATTATAATATAATCATTGGATTCGGCGTCCTTCAT 62569 33 100.0 33 ................................. TACCGTGAGATTGTACAATATGACCTTATCGTG 62503 33 100.0 34 ................................. CATCTTCCTCATATTTCTTTTTGAGCTGTGTAAG 62436 33 100.0 33 ................................. GTACAAGGCTTCCGATTCGCTGCTAGGCTAATG 62370 33 90.9 0 ............A.........C.T........ | A [62342] ========== ====== ====== ====== ================================= ===================================== ================== 33 33 99.5 34 GTCACAGCCTGCGAGGGCTGTGTGGATTGAAAT # Left flank : | # Right flank : ATTCCCGATACCGGGATGTCCGGAAGGCAAAATCCGGTATCCGGGCAGCGGATGTGGAAAGTGGGGCGGAATCAGTATAGATGAAAGATGGTATTCGTTTTAAACAATTGTAACAAACAGATATTAAAATAAAAGAACATGAAGTAAAATAAAAGGGCTGTCATTTCCCAAATTTTCCATTATAATTATATCTATAGGAGTCAGGTATTGTGATGGACAGGTAATCACAATCGGCAACTGCAGGCAGATTGTTCCAAAGGAGAGGGGAATATGGGAAGAACGAGACAATTGGCAGCCATATGGATGGCAACTGGATTGGCAGTAATCATGTGCGGTACAGCGGCGGCGGCTTCACGTACAGAGATTAACAGTGTATCCCTGTGGGTGGAATCTGATATTGAGGCAGGTGACAGTTCCAGTGATGTGGATGTGACCTCTGATTCCAGCAGATACACGGTGGATGATGTGGAAGTGACCAATGAGCCTAAGAATGAATGGGA # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACAGCCTGCGAGGGCTGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCACAGTCTGCGAGGACTGTGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.50,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 19191-17832 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAITT010000057.1 Enterocloster aldenensis strain MSK.1.17 NODE_57_length_29339_cov_95.5652, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 19190 32 100.0 34 ................................ CCCCATCTTGTCCTGAAGGACCTTATAGGCGTCT 19124 32 100.0 34 ................................ TCTGCATATTAAAGACACGACAGCATCTATTGGC 19058 32 100.0 34 ................................ AAGGAGGAAGAATAGCATGAATGAATCAACAAAC 18992 32 100.0 35 ................................ ATAATCATTCAGTAAGTCCTGCAATGCAGTAACGT 18925 32 100.0 36 ................................ TTTTAAACTTTTATCCAGTTTCTGCAACAAACTGAA 18857 32 100.0 35 ................................ TGTACATACTGGACGGCACTGATTGTCTTACCAGC 18790 32 100.0 33 ................................ CTTTTTGCTGGCGGCGGCTGGGGCAATGGTTTT 18725 32 100.0 34 ................................ TTTGGTGGTTATACCCCAAACCGGCCAGATATTG 18659 32 100.0 34 ................................ CTGTATTGCAGAAGTGCCAGTGATTTAGACAATG 18593 32 100.0 35 ................................ TGCAAAGGATGGGAAAATGCAAGAGGTTGCCGGAT 18526 32 100.0 34 ................................ CATTTATCCCGGCTCTTCCATACAGCGATAACCT 18460 32 100.0 35 ................................ GTATAATTCCTGTTTGTCCCCATTATACGTATACT 18393 32 100.0 35 ................................ AGTTGTTGCCGCACTAATACAGGCCATTGCCAAGC 18326 32 100.0 36 ................................ AGCAAGTACCTGCCTGAGGAGACCGTTTCCATTATC 18258 32 100.0 34 ................................ GAAGTAAGGAACCAGCTTGTTTTTAATAACCATG 18192 32 100.0 34 ................................ TTTCATGTACGGCTTACAGTAAAACAGTTTCCGC 18126 32 100.0 33 ................................ TGCTACAGGGTCTGGATTGCACCGCTCCCTGTC 18061 32 100.0 35 ................................ TCTCCAAGTATGAAAGAAGGTGACTCCATATGCAG 17994 32 100.0 34 ................................ ATCCAAGGCATCCGGGACAAGATGGAGGAATTGG 17928 32 100.0 33 ................................ TGACCACTCACCGCAGTAATATCTGCGGCTCCA 17863 32 96.9 0 ...........................A.... | ========== ====== ====== ====== ================================ ==================================== ================== 21 32 99.9 34 GTCACCACCTGCGTGGTGGTGTGGATTGAAAT # Left flank : AATTCGTATGAACCACAGATAGTTGCTGGTCAGTTTATTATAACGAGATGCAATTGTCGATAGGCCTTTACTTTTAGGAGAAGGTATTCTACTTAATGTCTTTTCATTTAAAGTAGCCAATGACAGTAACGATTAACCCTGGTTTCTTTCAGGAGAGGATTGCCAATTGTATGTATTTTTGTGCTTGCTCCGCCTCAACTATGGCCAATTAGACCTGATGATCCCCTTTTCTGCTCCGACATTATGCTGGTGGGCTTTTACAATGATAGAATCCATAAATAGGGGGGTGAAACATATGTTTTGTATAACTTTTAATTTTCAGATACGCCCGTGCGAATGGGAAGTACCCATGAAACCCCTGGGAGGTTCGCACCTGGGGAATCAGGAGTAGTTGGTGTTTTTGGGATGGATTTGGAGGGTTTGGAGGTGGTAAGTGGTTGCAGTAAAAGATTTATATGAAAATTGACGGATATAAGTATGAATAGTTGTGTAGATTTGCT # Right flank : CGTTGCCTTGATGCTTACATAGCCCCTGGTTAATGTTACCACCTAACGTTACTGAAACGGAAAAGATGTTACTTTTCTGCTGCGATTATAATAAAATTCTGCGTATTCAGCTATGGTGGGGCCTTCAATTATAATTATATTTAATTTTGTAATATGGCAGTGTAAAATTGATGGGATTGTAATTGATAGTACTATTGGGAACAAATTCACTGTCAGTTTAAATATTAGTGTAATCTTTGGAATGTTTCGCACTGCCATGTTGTATTTTGGTGGTATTTCAATCTATATCACCACGCTTGTACAGAGAAAGAAAAGACAGTATAATGAATCGGACAAATCATAAAGAAGTACAATGTACGGAATAAGCCCAAAAGGAGAAGGACATTATATAACATGGATATCTGGCACGGGAATCAGAATGGGTGAATAAGGCTACGAGGAAAATGTTTATTAAATTAATGAGTGTATTTATATGCGCGCTTGCAATCATTTATTTTCTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACCACCTGCGTGGTGGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.70,-5.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : NA //