Array 1 939864-940868 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP051389.1 Salmonella enterica subsp. enterica serovar Muenchen strain CVM 22536 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 939864 29 100.0 32 ............................. GTTGCACGCATTCCAGTGTGGTTTAAAAAACA 939925 29 100.0 32 ............................. AACAACCCGCTAGTATTACAACGACTAAAAGT 939986 29 100.0 32 ............................. CGGGCGTACACCAGAACGGCTATTCAGGCACG 940047 29 100.0 32 ............................. GCGCAGTATCAGGGAACGGCCGTTATTACGGT 940108 29 100.0 32 ............................. GAGCGTTTAAAAATGCTCGATACGCTCCAGCA 940169 29 100.0 32 ............................. ATTCTTGACTGGCTCGATACGCTCGCATCCAT 940230 29 100.0 32 ............................. ATTCTTGACTGGCTCGATACGCTCGCATCCAT 940291 29 96.6 32 ................A............ TCACAGTTGAGTTTTGCCGAATTTTTCAACAC 940352 29 100.0 32 ............................. GCCGGACTCAACGGCGAGAACGTCGGGGACTT 940413 29 100.0 32 ............................. CAGACTGTGGATCTCAATCGGCCCGGGCAACT 940474 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 940535 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 940596 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 940657 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 940718 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 940780 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 940841 28 89.7 0 ............T..........-.G... | ========== ====== ====== ====== ============================= ================================= ================== 17 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCTATTATGTTGGTGGAATGTAGTGCTGGTAAAAAGTAGTTTATAAACAATTATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 957137-959179 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP051389.1 Salmonella enterica subsp. enterica serovar Muenchen strain CVM 22536 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 957137 29 100.0 32 ............................. CCCTCTTTCGCCGCTACCGCAGCTAACAAGAT 957198 29 100.0 32 ............................. ATTTTCATCGCCAGACCAGGATCGGTGGGGTT 957259 29 100.0 32 ............................. AAAAATTCGGCGCCAGCATCGCTGCGGATACT 957320 29 100.0 32 ............................. GCTGGCGGTGTACTCATCGCTTTGCACGGTTC 957381 29 100.0 32 ............................. GAACGCACGTCGCACAATACGACGGTTAAAAA 957442 29 100.0 32 ............................. CGCGCCACGGGTAAGACCTGGGAAGAGACGAT 957503 29 100.0 32 ............................. CTCAAGTAAACGTTAGCACCACGAATATAACC 957564 29 100.0 32 ............................. GGCATTGCGTGGTATCGGGTTTGCTAATATTT 957625 29 100.0 32 ............................. GCGCCCGTCGGGGGAAGCAAGGCGGACGGGAC 957686 29 100.0 32 ............................. TAGTCCATAGCCTCAGCCCGGCTTGTCATCCT 957747 29 100.0 32 ............................. ATTACGAGACATTGTGGAAATCCATCTACGGC 957808 29 100.0 32 ............................. AGGCGTGCATCAATTGCTATAAAGCCGTAGTC 957869 29 100.0 32 ............................. ACTGGTTGAGAAGATCCGCCGCAGAATCAGCG 957930 29 100.0 32 ............................. ATCACATCACGCAGATATTATCTCATTACAGC 957991 29 100.0 32 ............................. CGCCTACGCCTGGGAGCTAATCCCCGACAGCA 958052 29 100.0 32 ............................. CCCGTTCCACGGCGAGAAAACCCCGTCCTGCG 958113 29 100.0 32 ............................. CCGTTGACGGCGAGCGCAGACCTCGGAAATAA 958174 29 96.6 32 ............................T TGCCATAGAAGAATCTGACCCTGATAACTGGC 958235 29 100.0 32 ............................. GCGTCCTCGCCAGCGTCAGCCGGGTAATACAA 958296 29 100.0 32 ............................. GCCTGCGTGAAAAACAGGTTCATCAGGATGCC 958357 29 100.0 32 ............................. CTCCTTGAGCAGGGGAAACCCTGCCTTTTCCA 958418 29 100.0 32 ............................. GGCTGAGAAGATCGGCGGGCAAACTGCCTATG 958479 29 100.0 32 ............................. TTTATTCGCCGAAAGAGGGCGACATAGTTATT 958540 29 100.0 32 ............................. AGCCAGGCGTTATCTTCTGGCGTTCTTAGCGG 958601 29 100.0 32 ............................. GTGACAACGGTCCCGGCGCTGGAAAAGGTGAA 958662 29 100.0 32 ............................. CCAGATAGAGGCTTTAACATGAAATCAATTAC 958723 29 100.0 32 ............................. GGGGAGGGTGAATTTAACGAGCTGTATAAAGC 958784 29 100.0 32 ............................. CAAAAATGATTACTATAATCCCATGTTGAACA 958845 29 100.0 32 ............................. CTTCATCTCGCAGTACGTAAACGCCTGCATCA 958906 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 958967 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 959028 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 959089 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 959150 29 96.6 0 A............................ | A [959176] ========== ====== ====== ====== ============================= ================================ ================== 34 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCTTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGTGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //