Array 1 420934-428077 **** Predicted by CRISPRDetect 2.4 *** >NC_016025.1 Chloracidobacterium thermophilum B chromosome 2, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 420934 36 100.0 35 .................................... TGAAAAAGACGAACACTCCGGAGGACGGGAAGCCT 421005 36 100.0 39 .................................... AAAGTAAAAGCTTACGTTCCAACCCTGGAGTACACGCGG 421080 36 100.0 39 .................................... TGAAAGGTTTTGTGCCGGGGTGTGCCCGTTTTCCGGCGG 421155 36 100.0 37 .................................... CTTCTGCGCCGGGATTGAGCACGCCGTCCACATCACT 421228 36 100.0 38 .................................... CTCCCGCCATTCACTTCCACTTGCACCGATTGCCGCCA 421302 36 100.0 34 .................................... GACTGCACAACCGACAACGCAAACTGCTTGAACG 421372 36 100.0 35 .................................... CGGCGTCAGGACGACTTCACGCTGGGCGTGCGCGA 421443 36 100.0 34 .................................... CTCTCAGCGCCCACCATCGTTGATTACACCCGCA 421513 36 100.0 37 .................................... GCGATAATGACGGCGATCAGCGGGAACGGCATCAGAT 421586 36 100.0 37 .................................... TCGTAGTGATTGCCGGCCATCTCGTAGACGGCTTTCA 421659 36 100.0 35 .................................... TGTGGCTATAGTACACGTGCGCATTGAGCTTGACA 421730 36 100.0 38 .................................... TCCATTACGTTTATCGCGTGCCGCAATCCCGTCAAGCC 421804 36 100.0 38 .................................... AACCACGCTTCGCCGCGCATATCGGTAAGCGTCGGCGC 421878 36 100.0 34 .................................... AGCTTGCGGCGTTGCGTTACTCGTACCAGCGGGG 421948 36 100.0 35 .................................... GCAATCAGCGGGAAAGGCATCAGATTATCCCCCCC 422019 36 100.0 34 .................................... CAGGGGTTGCCCTTGTGTTGCACAAACCAGTCGT 422089 36 100.0 39 .................................... GCAGGCTTACCGCCGCCCAACTCTGTCAAGTGCTTGAAC 422164 36 100.0 35 .................................... CCTTGCCGTCTCCCCTTTATTCCTGCCTTGCCAGG 422235 36 100.0 34 .................................... TTCGGCGCACGCTGAAGGTCTGTCCCCCAGACGA 422305 36 100.0 35 .................................... CGGTTTTTGTGAATTCGACGGTTGGCGGCTGAAAG 422376 36 100.0 35 .................................... GCCAAGCCGGCGCAGGGAAAACGTCGCTCATCCCG 422447 36 100.0 35 .................................... TTAGGAAACCGCACCAAGACGCGAACAAGCCCGGC 422518 36 100.0 38 .................................... ACAATGGCGATCAAGGGAAACGGCATTAGATTACCCCT 422592 36 100.0 35 .................................... ACCACGTCGCCGGGCCACGTGATACCAAATAAGCA 422663 36 100.0 36 .................................... TACGCGCGGCGTTGCGCGTCATTCAAATGCGACAGA 422735 36 100.0 36 .................................... ACGGCCTTGATTTCGTCTTCGATATTCCGGCGTCGA 422807 36 100.0 39 .................................... ATACCGCTCCGCCGGAATTGTGGTTGGAGCTGGACGGCA 422882 36 100.0 36 .................................... CAGACGAGTGGCAGATACAGCTACCGTCTGCCCTTT 422954 36 100.0 35 .................................... TCAATCAGGAAAAACCAGCCACGCACCGTCGCGGC 423025 36 100.0 37 .................................... TACCAGCCGGACTTGTCACGCTTTTCGCCCGTATTGT 423098 36 100.0 34 .................................... GCGCTTGTTACGCCGTATTGGGCAAGGAATCGAG 423168 36 100.0 36 .................................... TTTGGGAAGCGGGTGGTGGGATTACCCGTCATTCTG 423240 36 100.0 34 .................................... GTTCGCTCTTATTACTTCAGCGGCAAGTACTACG 423310 36 100.0 38 .................................... TCCACGATGGGCCGGTAGTCCAGTCGCGCGCACTCTTG 423384 36 100.0 38 .................................... ACCATGTACACAAAGTACACACCGGATAACCTAACCCA 423458 36 100.0 34 .................................... GTGGTATTGCCGCCTGCTGCACGACTGGGCATGG 423528 36 100.0 37 .................................... CCCTTTTTGTGGCGCCTTGAAGCCGATCTTGTTCTTT 423601 36 100.0 37 .................................... GCAAATCTGGACGCAACTTTGATTGGCGCTGCGCCGG 423674 36 100.0 35 .................................... AAGCGGCACGGGAGAAACCAGGAACTCGCCAGTAT 423745 36 100.0 35 .................................... TGGTGCTCCGCCTGACGCGGTATCTCACGGCTGTC 423816 36 100.0 34 .................................... AACGTTTTGTCAAGGGGAAAGTTCCGATTTTTTT 423886 36 100.0 35 .................................... GCCGGCAATCACTACGACATCTGGGTTGGGTACGT 423957 36 100.0 35 .................................... GCTGGCTGGCGTGGGCTGTGCAAGGGGAACTTTTG 424028 36 100.0 35 .................................... TCCACGATTGGTCGGTAGTTCACTCGCATGCACTC 424099 36 100.0 36 .................................... TTGTCGACCGCCGGGAAAGCAGCCGGCGGAGTGTCG 424171 36 100.0 36 .................................... GTGGCAGGCGCGGTTTCTGAAGGCCCTACCCGCTAT 424243 36 100.0 35 .................................... GTGTGGGTTTGAGATTCGCAACCGGGCCTTCAAAG 424314 36 100.0 37 .................................... CGCACCTGAGGAAGTGGATAGAACGACTGTCGAAAGA 424387 36 100.0 34 .................................... GACTCGTTACTTGACGAGTCCACGCCAGATTAAG 424457 36 100.0 37 .................................... CGCTGAACTACGTTTTGGCTAAGGTCAATCAACTGGG 424530 36 100.0 36 .................................... AAAAACTCAAGCTCTTGCGCAAGCGCATGGGCGGCA 424602 36 100.0 35 .................................... GATTTCGCCTATGCGAAGACGCTTGCGCGGAGATA 424673 36 100.0 39 .................................... AAGAAGCCCAAGCGCAGGCGCGGATTATTGACCTGACCA 424748 36 100.0 35 .................................... GCGGTAATCGTGATTATAACGCCTGAAGCGCGGGG 424819 36 100.0 35 .................................... CGGACAAGTGGCAGATACAGCTACCGTCCGCCTTT 424890 36 100.0 34 .................................... ACCGCGCCGGTTTTTCCGTTTGAGCCAAACTGGG 424960 36 100.0 36 .................................... CCCGTCGCTGGTCAAGGAGCGGGTCAAGGGGCGTCC 425032 36 100.0 35 .................................... ACGGCGTGCACTGGGTACTTTGCTTTCCCGTCGAA 425103 36 100.0 34 .................................... ACCGGGTCTGACCCATATATTGCATCACGAGTGC 425173 36 100.0 35 .................................... TGTTCTCAACCGAAATCACCGTATCCGACGGGTTG 425244 36 100.0 36 .................................... ACGGTTGGCTTCAACATGGCGTTTCAATCCTGGGTG 425316 36 100.0 36 .................................... GACGCGGTGATTCGTGAGGCAATCAAAGACAGGATT 425388 36 100.0 36 .................................... CACGCTGCCGTTGCTGCTGGCGGGCTGGACAAGCTG 425460 36 100.0 38 .................................... GGCCGCTATCTGCACCTGCAGGGGAAGGTGTATTACGC 425534 36 100.0 34 .................................... CGGTGTGCTATGCAGTGTGGGGCTGGCGTCCACG 425604 36 100.0 34 .................................... TACGGGAGACGGCGCAGAAGCTCCCCTAAAGCGT 425674 36 100.0 37 .................................... TCACACGCTTCTACGCGAATTCACAGACCGGGAATGG 425747 36 100.0 36 .................................... ACCGGCGAGAGACCGTTTCTATCCTGCCTTGGGATA 425819 36 97.2 38 ...........................A........ ATTTCAGCCGAGCGACCGCCGCTTGGATTTGTTCACGA 425893 36 100.0 38 .................................... GCCATCGCAGTCAAGAGCACTCGCTCGCTCTCGCAACA 425967 36 100.0 38 .................................... TTATCACAGCGCGCCTCGACCGCAAAGTTGACGCAAAG 426041 36 100.0 34 .................................... CTGTCACACGTGCTGGGAGTACACACCAGAGGGG 426111 36 100.0 36 .................................... TGGTTTCTCCTTTCCCGCATAAAACGGCTTCGAGTG 426183 36 100.0 36 .................................... CGATTGCGTCAGCGTCACGCACCTTGTCTTTGACAG 426255 36 100.0 38 .................................... GCGAACTCGTCTTGGTGCGTGTCGTTATCCGGGAGACA 426329 36 100.0 36 .................................... TTGACCGGAGACTGCTGCGAACCAACCTTGTTGGCG 426401 36 100.0 36 .................................... ATCTCTGGGTCGGATACGTCCGACCCAACACAGCCG 426473 36 100.0 34 .................................... GCAGTTGCACCGCCGCCGAGAAAACTTGCGGCTT 426543 36 100.0 37 .................................... CACACCATAGTACTGCTTCCACGCAAGAGCGCGTCGG 426616 36 100.0 37 .................................... AGCAGGCTGTAGTGTTTTCCATCCAGTCTTGCGACTG 426689 36 100.0 34 .................................... ATCGCCCCTAAGTCTGGCGGCTCCCAAGTGTCCA 426759 36 100.0 37 .................................... TAGACTTTTGCGAGTTTCAGCGACATAAGGCGGGTCA 426832 36 100.0 35 .................................... AATCGCTGCTCGCACGGGTGCTTTTACTGTTTCGC 426903 36 100.0 36 .................................... CTTCAGTTAGAGGCCCTTCAAGACTTGCTCAATCAG 426975 36 100.0 34 .................................... GGCCGCATCCTGTACTCGCCGTCAATGCCGGGCC 427045 36 100.0 36 .................................... GACGGCGGCCAAGATCAGTCCGAAACACGCCGTCGG 427117 36 100.0 35 .................................... GCCCATGAGGTTTCGTTTCTTTTTTCGATCTGCGA 427188 36 100.0 34 .................................... CTCCCTTTTTTTCTGCTTGTAGAGAAGGCGCCTA 427258 36 100.0 35 .................................... TCAACGAAACCCGTAAAACCCTGAACGCCTACGCA 427329 36 100.0 34 .................................... AGACGGGACTGACTACGGCTTACCCAGCCTGGTT 427399 36 100.0 36 .................................... CTTGCCAAACTTCTACCGCTACTTCCAGCGCATAAG 427471 36 100.0 36 .................................... GCCAGCCGGTAAGAATCAAGCTGGTCTAGTTCTAAC 427543 36 100.0 36 .................................... TCCGACAAGCCAATTGGCGCGGTCAAACGCAGGTCA 427615 36 100.0 34 .................................... GCCGGGCGGGGGCTACGCCCGAAATCTCACACCG 427685 36 100.0 35 .................................... ATACCAAGTATAATAGACTTCTGTGCGAAGTTGTA 427756 36 100.0 35 .................................... TGCTGACGGTTGTGGACGACAGCGAGGATGATTCG 427827 36 100.0 36 .................................... CACCCGTCACGCGGGTGCGAGTGCCGGAAGGCACTG 427899 36 100.0 36 .................................... TTTGATTCGGTCTCAATCGAGCACGAACGCGCGTTT 427971 36 100.0 35 .................................... CGGCCGAAATACCGGCCATATTTCCGCGCTGGCTT 428042 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================= ================== 100 36 100.0 36 GTGCAAAAATCTTTGATGCCGAAAGGCGTTGATCAC # Left flank : TACGCGATCCAAAGCGGTGGCGCAAAGTTTATGAGCGCGTCAAGGGGAATGCGGAAAGGGTACAATTTTCCGTCTTCCGCATGTATTGCACCAAAACTGACCTTGAGCAGTTGCGTTTTGATTTGGCAAAGCTGATGACGAGTGAAGATGATTTACTGGTCATTCATTTGTGTCCCGGCTGCGCAAGGCGTGTGGTTGACACCTCAACCAAAACTTCCTGGGATGAAGAACGCAAGCGGATTGAAATCCTGTAGGCGGGCGGATTCACGCATGTCGGTGTGGACAGGATGCTTTGCCGGTGAGTGTCTGGTAAGTCCTTTGAAGCGAACGCTTTTCCTGCCTGAATGTGGGGAAGACTTGCTTGAATGGGCCAGCGTGCTTTATTTTGCAGGAGTTACGGGCATTACCCGGCAGACGGGAGGCGGCTTGCCGCCTTTCCGGTTCAGGTGCTTGAGCAAGAAGCAGTTTTATGTGGCCAGTGCTTACCGTTTGGGGGCGCG # Right flank : CTTAAAACCGGCGAATGGCGAATGGTAGATGTATGAAACTCTCTGATGCTGAGAAATGTTGATCACCCACAAGGCGTTGTCAGGCAAAAGCAATCTTGAGAGATTGCTTTTGCCTGACAACACCACATCGCCAAACAAATTGACCGACCAGCAGTTCCCCTCCCCTGTCCCTAACCGGCGAAACCCGGCGGGCCAGGCAATCCACCAGTACCGCAGCGTGCTGGACAGGACAAGAACAACCGGTAGATTATTCAATGCCACCATCACACGCCCCGCCACCCCGGCCCTCATCGCACCACCCAACGTATGCCCCGCTGGCTGTTCTGCCTCATCATCCTGCTGTGCAACACCCCCGGAGCCTACGCCCTCGACCCAAACAAAGTCCTGACGCAATACGTCCGCCAAGTCTGGCTCGCCAGTGACGGACTCCCCCTCAACGCCATCTTCACCATCACGCAAACCCGCGACGGCTACATCTGGGTCGGCACCCACGAAGGTCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCAAAAATCTTTGATGCCGAAAGGCGTTGATCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 464806-464322 **** Predicted by CRISPRDetect 2.4 *** >NC_016025.1 Chloracidobacterium thermophilum B chromosome 2, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ================================================ ================== 464805 31 100.0 45 ............................... GAATTAAAGTGGACATTCAGCGACTTCATTTACCTTGACAGCCCG 464729 31 100.0 42 ............................... AAAGGCAGTCGGTGGTTGGTTATCTGAAACTGTATCCGCATC 464656 31 100.0 46 ............................... AAAGGTTACTTGACAGGGCGTATAGAATAGTGTAGAAACGAATTAC 464579 31 100.0 48 ............................... GAATTAAAGGGAGAGGCCATCAGAGACAGGATTTTAGCGGCTGTGCCC 464500 31 100.0 41 ............................... AAAGGAACTCCGTTCACGGTTGGCCTTCTCCGCTCCCTCTG 464428 31 100.0 45 ............................... AAAGGACGAGTTCAAGCGCGGCACGCTGCGTGCCCTGACCAACGC 464352 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ================================================ ================== 7 31 100.0 45 GTCATGGGTCTTGAAAAAGACCCCTTGAATT # Left flank : CGATGTCGTGGTGTACGAAGACTTGCAGGTGAAGAACCTGGTCAAAAATCATCATCTTGCCAAATCCATTCATGATGCTGGCTGGTCTCAATTCACTGCGTGGCTGGACTACTACGGCAAGGTGTGGGACAAGGCAGTCGTCAGCGTACCGCCGCAGTACACCACACAGGACTGTAGTAACTGTGGGCGTATGGTAGTAAAAACCCTGGCCACCAGAACCCATAGTTGTCCTCAATGTGGATTTGAATCAGACAGAGACCGGAATGCGGCTTTGAACATCCTCAAGAAGGGACTAAGCATCTTGGGAATGGAGTGGCAAAACAGTACCTTTGGGCAAAAGGGAACTGCCTCGAAAGAGGGAACGCTTGGGGAGAGATGCACCGCTGCTTTGGAGGGGCAACCTGATGAAGTAAGTGCGCTCGCAGAACCAAGAACAAGAATCCCCTGCCTTTAGGCAGGGGAGTATGTCAAGTGAAATTGAAACCGCCCTCGCGGCCGGA # Right flank : AAAGTCCGCCTGATGTTCGGCTGGGTTTGGGCCGGGGACCTGGTGCGTGTGGTCGTGACGACCGGCAAAAAGGCAGGCAACTACCTGGGTCGTGTCGCCATTCGAGCCAGCGGCAGTTTCAACATCCAGTCCGCAACCGGGCTGGTACAAGGCATCCATCACCGATGTTGCACACTGCTCCAGCGTGCAGACGGGTATGGATATTCGTGGACAATGAAATCAGGTCTGGCACAGACCTTACCGGTTACGCAGGACGAGCGATACGCACCGCTCTCGCTGCCATCGGTAGCGATCTGAGCGTACAACCAACGGACTGAAGCTCCGCGCGCCGCGAAGGGCAGGCGGAGCGGCGTCAGGTACGAGCGCGTGTCGGCCGGCAGCTTTGCCGTGGAGATTTTCTGGGGTTGCGAACCCTGGCTCATCAGGTTTGCTCCCTGTCCTTTTCTCGAACCCGATGAATACCGTCAGCCCTTCGCCGCTGCTGAATAAGCGTGGCTGAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCATGGGTCTTGAAAAAGACCCCTTGAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.06%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-9.70,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [35.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 3 984883-988557 **** Predicted by CRISPRDetect 2.4 *** >NC_016025.1 Chloracidobacterium thermophilum B chromosome 2, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 984883 36 100.0 36 .................................... ATCGCTGCCACAGCCCTGCTCCATCTGGCGGAAGCC 984955 36 100.0 35 .................................... TTTCCCATGAGGCGGTGCGCTGGGTGCTCTGCTTC 985026 36 100.0 38 .................................... ACGGAGCGGTTTGCCGCTTTGTTGCCGCCCGAGGTGCC 985100 36 100.0 37 .................................... CTCCGGGTCGCCGGACCACGTCCACGCATACAGCAGG 985173 36 100.0 37 .................................... CCAGGCGGCGGAGTAGGCGCTCCAGCGCCGCCCAAAG 985246 36 100.0 36 .................................... TCAACGATACTGAAGCGGTCGTCCAGCACGAAAAGG 985318 36 100.0 37 .................................... GGCAAACGGGTGAACAGGCTGCTTGAAGTGATGCCGC 985391 36 100.0 37 .................................... TCAGTCGTTGGCGCGCCGTCAAGAGCTTCCAGTACGC 985464 36 100.0 37 .................................... TGGCGCGTAGTTTCCCACCTAGCGTCCATCAGCGCCT 985537 36 100.0 38 .................................... CTTGACGCGAACGTTTTGCTCGGGCGGCTGATTGGCCA 985611 36 100.0 36 .................................... ATTCTTACCGGCTGGCCTTCTTGGTCTACCCATACC 985683 36 100.0 37 .................................... CCCTTGACGGTGGAGGCTACGGGCGGGCTGCTCGCAC 985756 36 100.0 37 .................................... GCAACCGCGTGACGGGACGCTGCGTAGCGATCACCGT 985829 36 100.0 36 .................................... ACTGCACAACCGACATCGCGAACTGCTTGAACGCTT 985901 36 100.0 37 .................................... ATTGACTGGAACAGCGACGAAAACGCCTTCTTTGACG 985974 36 100.0 35 .................................... GCGCCTGCGCGCCTATCTGTGCCCGGCGGGTGTCT 986045 36 100.0 38 .................................... ATTGACTGGAACAGCGACGAAAACGCCTTCTTTGACGC 986119 36 100.0 36 .................................... GCCCGGTTGCGGCAAATGCGCCGTATATCGTTGGCG 986191 36 100.0 37 .................................... ATCCCGACGTTGCCCGCGCCGATTGTTTTGTCAGCGG 986264 36 100.0 37 .................................... GGGACTTCTGGTTTCACAGGTGGGTTCTTGCTGATCA 986337 36 100.0 35 .................................... TCCCAGCGCCAGTCTCTGGCGCGAACCAGCGCCAG 986408 36 100.0 38 .................................... TGCAAGGACGCTTTGACGCAATGGCCGGAGACAAGAAT 986482 36 100.0 37 .................................... GCTAGCGAACTGGCGGGGTAGCCCCTACGGGGCTATA 986555 36 100.0 35 .................................... AACAGCGGGAGCATCTTTTCAGACGCTGGCAATCC 986626 36 97.2 38 ...................G................ AGACAGTCTCCGCTGGTGGCTGAAATGTCCTGGGAGTA 986700 36 100.0 38 .................................... CCGGCTCCGGGACGCCACAGGGTTCTCCGGCAACCGGC 986774 36 100.0 36 .................................... TACGAAGAGCGTGACGGCAAGTTTGTCCTGCCGGTG 986846 36 100.0 37 .................................... GTGACCGGCGGCGCGCCGGACGGCTGGATGGTGATGG 986919 36 100.0 35 .................................... ATCCGCAAGGTGGCAGAAGAAGTTGGCGTCTAACC 986990 36 100.0 37 .................................... CGCAAGCCGACACGACAAGTGCCGGGCTGCTGATTCC 987063 36 100.0 35 .................................... GGTTACGTCCCCGCTCCTACCAGCGGTCAGGTTAC 987134 36 100.0 37 .................................... GGGATTTCGGCGAGGGAAAGATTGACAGTACGCACGG 987207 36 100.0 38 .................................... CAGATGGTGCTCCGCGGCAAGCTGACGCGCCAGTTGCG 987281 36 100.0 37 .................................... TGTGACACGAGGTGTGCCTCGTCAATAACGACGAGAT 987354 36 100.0 35 .................................... GGTGCATAACTTATTGATCTGACTGGGCTTAGCTG 987425 36 100.0 35 .................................... TTGACACTGTAGTGCGGCGTCCAGTGCCAGCGCGT 987496 36 100.0 35 .................................... CGGCTTGGTCACGGGCTGATTACCGATCCGCCAGC 987567 36 100.0 36 .................................... ACCTGCGTTTATGGCCCGCCGGCCACTGTTTGATTC 987639 36 100.0 35 .................................... TAAATCCGGTCGTCGTCCTTGCACACGGCGTAGTA 987710 36 100.0 37 .................................... TCAAGGCGCCACGCGACCTCTTCGTTGTCGTGCTCCT 987783 36 100.0 39 .................................... CCGGCGCCGGTCGGGATCGCGTGCAAGGGGTGCCGACAT 987858 36 100.0 40 .................................... CGCGTCGGACAAGTGTGACAGGCGGACACACGGGACGGTA 987934 36 100.0 39 .................................... TAGACCTTGCCCGGCTCCGGCTCAGGCAGGCCAATGACC 988009 36 100.0 38 .................................... GCGCGAACAAGGGCGAGCTTAGACTGGGGGAGCGGGGA 988083 36 100.0 38 .................................... CGGCGTGACGCCCGCCAGAGATCGAGTAACTCGATGGC 988157 36 100.0 37 .................................... AGTTCACAATCTCCATTTCGTTCTCCTTTCTTTTTCG 988230 36 100.0 37 .................................... GCTGCGGTGAGTTCGGCAATCAGTTTGCCCCGGCAGG 988303 36 100.0 36 .................................... GCGGTCAGCGTTAGCCTGTGTCAGTTCGCTTCTGAC 988375 36 100.0 38 .................................... GCAAGCCTATCTCGACGCCATCGCCCGTCGGGCTGAAG 988449 36 100.0 38 .................................... TGCTATGCTGCCCTGCTTGAGGAAAGTGCCCGTCTTGA 988523 35 88.9 0 .............-.......TT...T......... | ========== ====== ====== ====== ==================================== ======================================== ================== 51 36 99.7 37 GTTTTCCGCTTTGAAAAAAAGCGGCTCCATTGAAGC # Left flank : CGGTACATTGTTTGCTATGACATTGCCAATCCGAAGCGGTGGCGTCAGGTCTATCGGATTATGCGTGGATTTGGCGATCCCTTGCAGTATTCGGTTTTTCGGTGTGATTTGTCGGCGACGGAGCGTGTTCTGTTGCTGATGGCGGTGACCGAAGTAATCAACCAGCGTGAGGATCGGATTATGCTGGTGGATGTTGGTCCGGTGGACGGGCGTGGCCGGACTTGCATCGAGGCGCTTGGGAAGCCTTTGGAAGTGGCGCCGACGGAGCGCATCACGGTTGTTGTATAGCGTTCATTGGCTTAGAGTGGTGACGTGTGGGGTCTGTGCGAGAGGCGGGGTGGTGCCGTGTGGTGCGGGAGCCGCTCGCAGGACTTAGGGGCTTATGTGGCTTGAGTTTACAAAAACAGGGTTGACGCGATCCGGGTTTTGCGGGTACAAACTCTCCGCCGCTCGCAAGATACCCTGCAGGTCTTTGAAAGCAAGGGACTTGTGAGAGTGCG # Right flank : CCCGATGCTTGACAAGACAACCAAACTGTGCCAAACTTTTTCCACTTTGAAAAATTGGCTTCATTGAAGTGGTTTTTCTTTCCGCAAATGCTAACCGAAGCGACTAATGCTGCTTTGAATGAAATCGGACAGGCATTGATTCGTGGTTATGAAGGGAGAGTTTATGAACACAGAACTAGAGTTCTTACGGAAGATGATTGAGCTGAGTTTGAAAAGGAAAAAGCGCTAAAGAAATAACCGACGAGATGCTACCAGCGTTTCAGGAAATCAGGGCACGGATAGAACAGGAAATGGCGGAACTTCTGGCGAAAAGAAAAGAATACTTCCGACGCCAAAAGGAAGAAGAATAAAAATCAACTGCAGTCTGCTTGCCACGCCGTTTTCCGCTTTGAAAAAAGCGGCTTCATCAAAGCGGCAGAAAAGCGAGCGGTGAATGGTGAGTGATTTTCTGCCTTGAAAAAAGCAGCCCTGTTGAAACCTTTGCAAGGTCTCAGTGAACC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCGCTTTGAAAAAAAGCGGCTCCATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.30,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA //