Array 1 195444-191812 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACZDN010000004.1 Bifidobacterium dentium strain 181B Contig_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 195443 33 100.0 33 ................................. AACTTCCTCGCCGCGATCTTCTACCAGTGCCTG 195377 33 100.0 33 ................................. CATGGCGGCTAGCGCAATTTCCATGGGACTTGT 195311 33 100.0 35 ................................. ATGATTATGGTCAGTCGCATTGGTAGCATAATCTT 195243 33 100.0 34 ................................. CAACGGGACCGGTAAATTCGCGGCTATCGCCGGA 195176 33 100.0 34 ................................. GAATACCATGCTGGTAGGATGACGTGTTTGCCGT 195109 33 100.0 33 ................................. ACGTCCACCGGCTTGAACACGTTATCCAAGGAG 195043 33 100.0 34 ................................. ATTGAGCACGTCGGCAGCGGTGAAATTGGACATG 194976 33 100.0 34 ................................. CATCCTCAGAATGCAGACGGTCGAAACGAAATGC 194909 33 100.0 34 ................................. TATGATGAAGTACATAAGGCCGTCGATAAGATGT 194842 33 100.0 33 ................................. AGCCACGAAGGTGACTTGGTAGCCAAACTGCTG 194776 33 100.0 34 ................................. TCCTGAATGGCCGCACCCAGATCGCCGAACATGC 194709 33 100.0 34 ................................. CAAGCAGTACCGTCAGAGCCTTGCCAGCCGGAAG 194642 33 100.0 33 ................................. ATCGCCCGGAACGTCGCCCGAGTGCACATTCAG 194576 33 100.0 34 ................................. GATGGTCGGCATGGTGCAGCAGTTGGCGCCGTTG 194509 33 100.0 34 ................................. GATGCTACCGCACGCATGCTGACTTTCGACGCCA 194442 33 100.0 33 ................................. GTCGAAGAAGATTATGGAGACTTTTGGAAGCGC 194376 33 100.0 33 ................................. AACAGCAACGCCCCGCAAATCAACATGAGCGGC 194310 33 100.0 33 ................................. AAGGACAAGGTGCAGGCGAACTCCGACGCCATC 194244 33 100.0 33 ................................. TCCACCTGATACAGACGGATATACACGTCTGCA 194178 33 100.0 34 ................................. ATCGAAGTAGACGCGGGTACCGAAAGCTTCGTCC 194111 33 100.0 34 ................................. TTCTAGGCATGGTCTGAGCAGTGCGGGGAATATG 194044 33 100.0 33 ................................. ATTAAGCGCGACTAACGCACAACGAAGTCTTTT 193978 33 100.0 34 ................................. GTAATCAGATGGCGGAAATGCAAATACGCAAGGA 193911 33 100.0 34 ................................. CTCCAGATCTTCCGCAGAACCGACGACACCGACG 193844 33 100.0 33 ................................. AGCGAAGGACTCCGGACAATCCGCCACGCACGC 193778 33 100.0 33 ................................. TTCAGGATGTGCATGTGAGTCTCCTTAGTTTCT 193712 33 100.0 34 ................................. CACATAGGCGGCAGTCTCAGCATCATCGGGATAG 193645 33 100.0 34 ................................. AGGTCAACAGTCACCCGCACCCCCTCCATCGCAG 193578 33 100.0 33 ................................. CCCTTCTCCACGACGCCTTGACCCTCTACTCGA 193512 33 100.0 34 ................................. ATCATCTGCTGTTGCCTTCCAATAAAATAAATGA 193445 33 100.0 33 ................................. AAGGTGTTGAGCGAAGCCGTGCGGTTGCGTTGC 193379 33 100.0 34 ................................. TTGACAAGGTACGTTTTGAAGACGCAGCCGATGA 193312 33 100.0 34 ................................. TTTTTTGAAAGGATAAGGCAATGAGCATTCCACT 193245 33 100.0 33 ................................. AAGATGATTGCGCATATATCGCCAAAAAAGCGA 193179 33 100.0 34 ................................. CTCTTCCAAGTGGCGTTTTATCGCAATGACCTGT 193112 33 100.0 34 ................................. TGGATCCCGAACTACGCCGCACAATATGCGGACC 193045 33 100.0 34 ................................. CGACTCTCACAATGGGACAAGAAGACACATGCTT 192978 33 100.0 33 ................................. AAAGCCATCCCCATTCACGGGGGTGGCTTTTTT 192912 33 100.0 34 ................................. TCTTTCTTACCGGGTACGGGAACGGGAACGGGGC 192845 33 100.0 33 ................................. GAGACGGCAACCGTCCGATATTTGCGTTGGGCG 192779 33 100.0 33 ................................. ATATCGTCATTTTCAGTCCAACTGACCTATGTG 192713 33 100.0 33 ................................. CTCATCCAATGCCTCTTCGACCCGGATCGCGTA 192647 33 100.0 34 ................................. ATGTGCCCAAGGGTCAACTGGCCATACGGGGTCG 192580 33 100.0 33 ................................. CGGACAGGTACCGGCATTTGAAGAAACTGCTCA 192514 33 100.0 35 ................................. CCCTACTTGCGCGACGAGTTCACCGGCGTGCTCAT 192446 33 100.0 33 ................................. TCATCCACATGTGCGGGGCAGAGCGTGTAGATG 192380 33 100.0 34 ................................. CACAAAGTCGCGGATGTCCTTGTCCTTGATGCCG 192313 33 100.0 33 ................................. AACAAGGCGCTTGTCAAGCTGAACACGGAAGGT 192247 33 100.0 35 ................................. TCATGTTCCATTGCCCTGAGGTTGAGGATAGCCCA 192179 33 100.0 34 ................................. ATCGATCGCTATTGCGCCACGACGATCGACTTCT 192112 33 100.0 35 ................................. ATGAGCCGTGAAGTCAAGGCGAAAGTGCATGGAGG 192044 33 100.0 35 ................................. TCGAATTCGTCTACTCCGGTAGCCCGTGGGTGCCG 191976 33 100.0 34 ................................. AAACGAATACCGGAACCGACATCAATATCATCAG 191909 33 100.0 33 ................................. ACGTTGGTCTGCCCGTTGAATCCCGACAGGGAG 191843 32 84.8 0 ....................T.A.-...A...C | ========== ====== ====== ====== ================================= =================================== ================== 55 33 99.7 34 GTCGCTCTCCTCACGGAGAGCGTGGATTGAAAT # Left flank : CTGCGGGGAAGAGACGGTTGCGTAACGTTGCGAAGACATGTATGAAATATGGGCAACGGGTGCAGAATAGCGTATTCGAGTGCTCGGTCACTTCATCGGATTATCTAACTTTAGTAAATGAAGTGATGAAAATCATGGATCAAGAAAAAGATAGCCTGCGCTTATATAAATTAGGGACAAAATATTCTGAGAAGATTGAACATTATGGTGTACAGCGGCATCTTCCTGTAGATGATGTGATGATGATTTAGACGCCGAGGCCTGTCGTTGTGCGAAGTGGAAGCTCTCATCGAATAAGGCAAGCTTCGCACCTGGATGGAACTTGGAATCGAAAAGTAAGTCGATTTTCCTTGGCTGTTTGATAATTTCAGAGAGAAGAATCGTTATTATTTTTTGGTAGAGTGATTAGAATAACGGGTTTTGACTTCAAACCCTGCTACTCTTGAACTTGTACGAAGGATAGATGTTCCACAATGTGAAACATGCTGTCCATCTGTGCA # Right flank : ATGATGGGAGCGGCCATGGGATTGCGTGAACGGCGTGAGCGTTGCGGGTTGACGTTGCTCCAGTTGGAAGCGTTGACCGGTATCGCCTTCACGCGGTTGAGCACGTTGGAGTGCAATGCGTCCGAGGCTCGCAACATGTATTTGGGTACGGCTCGGCGGATTGCCGACGCGTTGCATTGCAACGTGTTGGACTTGTATCCGGATGAGGATGCGTGGCGTGGCGGCGTGTCCGCCGGTGTGACCGGGTTGAGGAGGATTCGTCGGGAACGGCATTTGACGCAGCGGATGCTGTCAGCCTTGACGGGTATTCCCCAGCCTAATATTTCTTGGTTTGAGACCGGGTATCGTCCCGTGTCTCAGATGTATTTGGATACTGCGCGGCGCCTGTCGGAGGCGTTGCAATGCGACCCTGTTGATTTTCTAATTGATTGAAAGGATATTGTGATGAAGGCTGAGGTTGTTATTGTTACGAGGTTGGAGCGTCATGGCGGGACGATGCT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCCTCACGGAGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCTCACGGAGAGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.10,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 203596-203772 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACZDN010000002.1 Bifidobacterium dentium strain 181B Contig_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== =========================== ================== 203596 24 100.0 27 ........................ GTAAAACAGTCGAAACCACGTTGCGAA 203647 24 95.8 27 .............T.......... AACAGGGTGGCGGATCCGAGGTGCGGA 203698 24 91.7 27 ..G.T................... GTCAGGACGTCAAAACCGGGGCGCAGT 203749 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== =========================== ================== 4 24 96.9 27 TGTCCGATTCTGGAGAATCGGACA # Left flank : GCAGACGCCCGCCGGCTTGATGCGTCCGAAAGCCCCGCGCGCAGGTTCGCGCATTCTATTGGAGCGGATTACGCCGATTTGGAGTCGTTTGGGATTCCTAAGCAAGGTTACTGCGCGCAATATCTTCCGTTTCAAGTCGCGCCTGGTCATGACGGTCGGAGGCGTTGCCGGATGCACGGCGTTGATCATATGCGGGCTTGCGATCAACGACACCGTGGCGGAACTTGGCGTCAAACAGTATCGCGATATCTACCGATACGATGTGATGGTCGTTGCGAACGATACCGATGCGGATGCAATGCGGGCGAAGTTGCGAGCGGACGGGCGTACGACTTCGACCATGGACATACGTGTCGAATCCGGTGATCTGGCGAACGATGAGGGAAGCGAGGGCATCCAACTTGTGGTGGTGCCCGAGGAGCATCTGGATGAACTGGGCGAGATGGTTACGCTCAAGCCGGTCGCATCCGGATGGGATGGTGTGCGCAAGTTCTTCGGAC # Right flank : AAACGAAGCGGCTCGAAGGCGGTGTTGGGCGACAGTGGGGTGATCGTGTCGCAGTCGGCGGCCAACGCTCTGGGCGTTAAGGCCGGCGATACGGTGAATCTCACCAACGGCGATGGCATTCAGGCCAAGGCCAAGGTGAGCGAGGTGACGCGTAACCTCATAGGTTCCGACATCTACGTGAGTGAATCGTATTATGGCAAGCTGTTCGGTTCAGGGTCCGGAATGTCCGATTCTCCAGAATCGGACAAATCGGATTCCGGCGGCTCCTTGACCTGGAACGCCGTATACGCCAAGCTCACCGGATCCGACGATGCGCAGATCGCATACGCCAACACCCTCGAAAAGGATGATTCGGTGATGAAGACGGTGTGCTGCGCGGACATGGCCGCCAGCTTCAAATTTGACCTCATGGGCGCGGTGGTCGCCTTGATCGTTGCGCTTGCGGGCGGTCTGGCGCTTGTAGTGCTGTTCACGCTTGCCAATACGAATGTGTCGGAACG # Questionable array : NO Score: 2.55 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:-0.15, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTCCGATTCTGGAGAATCGGACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.00,-3.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 2 261680-261503 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACZDN010000002.1 Bifidobacterium dentium strain 181B Contig_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== =========================== ================== 261679 24 100.0 27 ........................ CTCGGAGGCACATGCAGGCATCCTACA 261628 24 95.8 27 ...................A.... AACAGATACGCTCCGCTTCCCCACAGT 261577 24 100.0 27 ........................ TGCAAGGGCGTGTGCGGGTACCTTATG 261526 24 91.7 0 ...........GG........... | ========== ====== ====== ====== ======================== =========================== ================== 4 24 96.9 27 TGTCCGATTCTCCAGAATCGGACA # Left flank : CCTCAACCAACTGTTCGCTGGCCTCGGCGCCGACGTCAGCAAGTAGCAGGGTGTCTTCGACATCCTCCCAATCGGACTCGGAAAGATGGTCCTTGGCGAGGATGTTGAACAATACCTTGCCAAAAGGATTGCCTGACTTGGCCAGCTTGGCCTTGAGACGCTGAATGCGCGAGCCCGTGGACTCCGGGGTTTCCACTGCCGGCGCGGCCTTCGCCTCTTCCGTCGAGGCGATCGGAGGGACTTCGGCCGCTACTTCCTGGACTTCCTCGGCTTCTTGGGCCGTCTCAGCTTTCTGGACTTCTTGGGCAAGACGCTTATCAGCCTTGGCCTTGGCATCCTCAACGGACTTGTCTACGGCTTTCTTGCGCGACTTGCCGAACCACCAACCACCAAGCAGCAACAGCGCTGCAATCACAACAATGGCGACAATCGCGATAATCACATTGGTATCCATAATCCCAGCCTAAAAACCGCAACGGACACATCGCCCCATCCTCACC # Right flank : CTCGGAGGAGCTCATCCACGGGGCGTGAAAAACTGGACAGCATGGCCAGTACATCCAGGATGACGTCATTTCAAAGACGTGAGCAGCTCATCGAAATCGGTCGGTCGCTGTTCGCGTCGAAGGGGTTCGAAGCGGTAAGCGTAGAGGAGATTGCCGCGACCGCGAAGGTATCGAAGCCCATCGTCTATGAACATTTCGGCGGCAAGGAAGGCCTGTACGCCGTAGTGGTGGACCGTGAGATGCGCGCACTCACCGACACACTCGTCAACGCGCTGTCCGACCAACAGGCGCACCCTCGTCAAATCGTGGAACGTGCCGCACTGGCCCTGCTCACCTATGTGGAGGAGAACGCCAAAGGATTTCGCGTGCTCACCCGAGATTCGCCGAAAACCGATCCGGCCGGATCGTTCAGCTCACTGCTCGGCGATATCAGCATTCGCGTGGAAGACCTGCTCACCGAATCGTTCAAACGCCAGCATCTGCCCGCCAAGGGCGTGCCA # Questionable array : NO Score: 2.55 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:-0.15, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTCCGATTCTCCAGAATCGGACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.00,-3.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //