Array 1 325854-323125 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP033326.1 Xanthomonas cucurbitae strain ATCC 23378 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 325853 28 100.0 32 ............................ CCGACCAGGATGCGACCTGACGACGACAACAT 325793 28 100.0 32 ............................ CGCAAGAGAACAAGGACCCGCTGATGCTGCTC 325733 28 100.0 32 ............................ TTAAGGTAGCCGCGAAACTCCTCGGGCGTGAG 325673 28 100.0 32 ............................ AAGCCTATTGATGATGCGGATCCGGGAGAAAC 325613 28 100.0 32 ............................ TCATCGCGTGCCGTATACTTTCTGAAATTCTG 325553 28 100.0 32 ............................ TTGCGCGATCACTAGGGGTGGGTGATAGACGG 325493 28 100.0 32 ............................ CACGTCTTGAGAAGACATGAGGCGCTATGAGA 325433 28 100.0 32 ............................ TGGCAGTGGCTGTTGACAGGTGACACCTGAGC 325373 28 100.0 32 ............................ GAGAGGGTAAACGGCGGGCAGAACGGTGCCGC 325313 28 100.0 32 ............................ TGGGCTATGGGCGCGCCATCGAAACGCGCGAG 325253 28 100.0 32 ............................ GAATACCCGTTGGCCTCCCATCGCGACATCAT 325193 28 100.0 32 ............................ TGGTCGGCGAGGGCAGCTTTACGGGAGTAAGC 325133 28 100.0 32 ............................ GCAAAAGCAAAACCCCCGGCTTCCGCCAGGGG 325073 28 100.0 32 ............................ AGGACGCCGCGCGCGCGATGGCGGCGGGAATT 325013 28 100.0 32 ............................ TGATTGATGATTGATCGCGGTTTTGGATTCGA 324953 28 100.0 32 ............................ GCGATGCGATCAACATCCAGGCCGTTGTCGTA 324893 28 100.0 32 ............................ AGAACACGGGACGCGCCAACTACGCTGGCATG 324833 28 100.0 32 ............................ AAGGGCCCCAAAGGCATGATTGCTTATCATCC 324773 28 100.0 32 ............................ ATTGAGCAAGTCCGGCAGCACTGCCGGGCCGA 324713 28 100.0 32 ............................ GTTCTGCAATGGGATCCTGGCCTTCCAGCAGC 324653 28 100.0 32 ............................ GCTACATCATCGGAAACCCGCAGGGCACCATC 324593 28 100.0 32 ............................ ATCGCGATACCCTTGCCGGTGCACTGCGTGCG 324533 28 100.0 32 ............................ TTATGCAGCTGCTCTTTGTCCACGCCGGCCCG 324473 28 100.0 32 ............................ CTTACCGGCTCCGACCTTTACACCGGGCATCC 324413 28 100.0 33 ............................ CTGGATACCGGCGGCACAAGCGGGTACACGCAG 324352 28 100.0 32 ............................ ATCATCGCCACCGTGTTCAAGGGCTGGCGCGT 324292 28 100.0 32 ............................ GTATCTCCGTAGACGCTTGCCCGCATGACCCC 324232 28 100.0 32 ............................ TGACCAACTGGCCCAACCACGGCAAGGGCTGG 324172 28 100.0 32 ............................ TTGAGACCGCCCGCTTATCGCGCTCGGTCGCA 324112 28 100.0 32 ............................ GACGACCAGCTCCGCGCCTGCCAAGCCGTGGT 324052 28 100.0 32 ............................ ATGAGCGAGCCGGCAGTGATTGGCCGCCAGGT 323992 28 100.0 32 ............................ CACCGAAGTTGGTGCCGGTCTTCACCGGAGAG 323932 28 100.0 32 ............................ AAATGAGCGCGGCGATGATGGCGATCAGGATG 323872 28 100.0 32 ............................ TGGTCAACTTGACCGGCATCGTCGGCGGCTAC 323812 28 100.0 32 ............................ TTACGGATATCTCTCGCGGTCGCTGCATCGGC 323752 28 100.0 32 ............................ GGGCCAATCTGTTCGCAGCGGAGAGGCGCTGT 323692 28 100.0 32 ............................ ACGGCGTGCGGCCGACCACAGGTCCGTAGCGT 323632 28 100.0 32 ............................ AAGAGCCTGACTGCGCCGCGCCTGACGCTGGC 323572 28 100.0 32 ............................ TGGAAGCGCGCGACCGAGCAGAACGCGCATGA 323512 28 100.0 32 ............................ TTTTCGCGCTCACGCTGGACAGTCTGGCTGAC 323452 28 100.0 32 ............................ TAGCGACCGAATCGGGGGATAAATGCGGAATG 323392 28 100.0 32 ............................ TGCTGCTCCACCGGCGCCTGCGACTGCCGAAC 323332 28 100.0 32 ............................ GTCAATGGACGCTGATGCCGAGCACCTTAAGC 323272 28 100.0 32 ............................ ACTCGCGAAGCAACGATTGCTGGCGGATTTGA 323212 28 100.0 32 ............................ AACGAGCGCAGGGACCAAATCAACGGGATGGG 323152 28 89.3 0 ...................A...G...T | ========== ====== ====== ====== ============================ ================================= ================== 46 28 99.8 32 GTTCACTGCCGCGTAGGCAGCTCAGAAA # Left flank : AAGGCCAGGATCGCAGTTACATCAAGGGCCAGCGTTACACCCTGCTGAGCAATCGCGAAAACCTTACCCTGGACGGTCGGAAGGCGCTCGCCAAGCTGCTGGCGGCCAACAAACGTCTGAACACGGCGTACCTGCTGAAAGAGTCCTTCGGGCAGCTGTGGAGCTACCGCACCGAGCGAGGTGCACGGGAGTTCTTCGAGCGCTGGAAGCAGAGTCTGCGCTGGCAGCGGCTGGCGCCCTACCAGACGTTCGTGGGGATGATCGAGCGGCACTGGGACGGCATCGCGGCGTACTGCAGGCCGGAGAACAAGGTCAGCCTCGGCCTGGTGGAAGGGCTCAACAACAAGATCCGGGTCATCCAGCGCAGCGCCTACGGCTATCGCGACGAGGAGTTCCTGAGGCTCAAGATCATCGCCAGCTTCCTGCCCGCGCTACCCGAAAATGCTCGATTGCACCCACAGTGATCCGCGAAGATCCATTAAAGAAATGTCGCCACACGC # Right flank : GCCGAAAAGCGGGCAGCCACCTCTGCAGCCATGGATTCCGAACGCAACGAGTCAATCGGCTTGCACGAGAACCAGCTGCCTTGTGGCAGCCGGTTCATCCGGCTCAGCTCCGCGGCTTGCGTTTTGGACGCGCGGCCGCTGACGTCTGCGCTTCGATCCGGTCGCCGACCGCCTTTCGCGTTGTCTTCGCAATTTTTCTGGTCGCCGGCTTGACCACCGCTTTCGCAACCTTGCCTTTTAATGCAGCAGACGCTTGCGTGCTTTTCTTCGTAGCTGTAGATGCACGGCTTGCGGTTGGAGGGGTGGCCCTCTTTGCCGCGCTTTTACGCGTCTTCCCGGCTGGCGTCATGGCACTGGTGCGCACTTCCGGTGGGCGGCGCGGGGGTGGCTTGCGGCCGGGGGTGAGTGCCCGCCAGGCATGGCCGCCGTTCATGGCCAGCAATGCGTCGGCGGCCGAGGGGCCGGCGCTGCCGGCGGCGTAGTTGGGGAAGTCGCTGGCC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 332890-327280 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP033326.1 Xanthomonas cucurbitae strain ATCC 23378 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 332889 28 100.0 32 ............................ ATCTGCGGCGATGCCGCCACGGGTGAAGACAG 332829 28 100.0 32 ............................ TCCCGTAGTCCTGTCTGACGACGAGCCGGAGC 332769 28 100.0 32 ............................ GGTGGCAGCGGGTCGATGGCCTGGCCGATCGT 332709 28 100.0 32 ............................ ATCGAAGACTGCATCGACATGCGGCGGGTGAT 332649 28 100.0 32 ............................ TGTTCATGGGCGGAATATCGGGCATTTCGCGA 332589 28 100.0 32 ............................ GCATCAATCCAGACCTCGACCCGCATCGTCAG 332529 28 100.0 32 ............................ ACCACGGCCGCCAGGCCGGCCGACTCGTGCCC 332469 28 100.0 32 ............................ GCCCTGGCGGTAGTGCTGCCCGCCCACCTGGC 332409 28 100.0 32 ............................ AGATCCTCACCGACACGCCGACTGGGGTCGAG 332349 28 100.0 32 ............................ TGCTGGCCGCCCGAATACAGCGAGCCGCGCGC 332289 28 100.0 32 ............................ AGCGCATCCTGCCAACACTGCAGCAGTTTGGT 332229 28 100.0 32 ............................ AATCCCGGCACGGGCGGCATTCCGTTTCGCGT 332169 28 100.0 32 ............................ ACTCGCAACCGTTTGTCCACTGGCGGCTAGAC 332109 28 100.0 32 ............................ TCACGGTGCCTTTGCTTGGACAGTCGGTCTAC 332049 28 100.0 32 ............................ CTGAAGGACGGGGTCACATGAAGGCTCTGCAA 331989 28 100.0 32 ............................ AGGGAAAACCAAGACCCGTCCCAGGCTTTGGA 331929 28 100.0 32 ............................ GCCCGTGCCGGGATTGGTGTAGCTCACCAATC 331869 28 100.0 32 ............................ AGCGAGAAATTGCGGTCTCAGTTGCCACATAC 331809 28 100.0 32 ............................ TGGTGCGGCTTGGGGAACTTGCCCGCCTGCAT 331749 28 100.0 32 ............................ GGCAAGCCGCGCAAGCCATCTTATGCGCTGCT 331689 28 100.0 32 ............................ TGTGTGGTCGATTTCGCCTTCGGGATTGATGA 331629 28 100.0 32 ............................ ATTAACCGCGTTTTGTCGCTGTGCGAGACGAT 331569 28 100.0 32 ............................ GTAGATGCCGCGATCTGCCTCGGGATGTCGAT 331509 28 100.0 32 ............................ TTCGAAGCTGGACGTAAATGCCGCTGCTGCGT 331449 28 100.0 33 ............................ AACCAAGCCTGTCAAGGTGCGCGCGTACTGCAT 331388 28 100.0 32 ............................ ACATAGCATCCGCTGGCAATAGTGTTTTGATA 331328 28 100.0 32 ............................ ATTCACGGCGTGTGCCGCACGCTCGGCGAAAT 331268 28 100.0 32 ............................ GAGTACATGCCGAAGGGTATCCTAAACCACGA 331208 28 100.0 32 ............................ GCCGGGCTGGTCGCGTTCTGCGGCTCGGTTTT 331148 28 100.0 32 ............................ GTCATGCGGAAATTGTGGGTATGGAAGATTCT 331088 28 100.0 32 ............................ TACAACGTGGGCACGCCTGCGTTCTGCCGGTC 331028 28 100.0 32 ............................ CACTGATACGCACGGTCGATAACGTCGTGAAC 330968 28 100.0 32 ............................ ATGCAGCGTCAACGGCATCAGATCCAGCCGCA 330908 28 100.0 32 ............................ TTCGCGTTTCCACGCGGTGTCGAATTGAACTC 330848 28 100.0 32 ............................ TTGATAGCCTGCGTGATGCCGGCTCTCCCGTC 330788 28 100.0 32 ............................ TGCTGGTGAATGCGCCAGAGCAGGCGCGGCCC 330728 28 100.0 32 ............................ ACTGAAATTTATTTCCTGAACTAGCCGGTACG 330668 28 100.0 32 ............................ ATTCGACTGAACATAACGGATAACATCCTGAT 330608 28 100.0 32 ............................ AAACCCGGTAGCCTGACCCTTCCTTCCGCACT 330548 28 100.0 32 ............................ TGTCGCAAGACTGCGAACAATCGGGCCTGCGC 330488 28 100.0 32 ............................ ATTGTCGTAACCGGGGGCTGGTGGGATGATCC 330428 28 100.0 32 ............................ ATTGGGTTCGTGCGGCTGTGCTTCCGGTGGGC 330368 28 100.0 32 ............................ ATTGTCGTAACCGGGGGCTGGTGGGATGATCC 330308 28 100.0 32 ............................ ATTGGGTTCGTGCGGCTGTGCTTCCGGTGGGC 330248 28 100.0 32 ............................ CCGACCTGGCGAGCCTTCCGGCCGGCGCTGAC 330188 28 100.0 32 ............................ ATGGAACCAGCCGTGAACGTGAATTTATCCCG 330128 28 100.0 32 ............................ AGGCCAAGCTGTTTCGCTAATTCCAATTCATC 330068 28 100.0 32 ............................ CGAAATTTGGGGCGATCCCGGCGAAATCATCA 330008 28 100.0 32 ............................ GTCTTGCGACAGGCGATCATGACGGTTCCGGC 329948 28 100.0 32 ............................ TGCCGAAATTCAGCTGGTGTAAACATTCAATA 329888 28 100.0 32 ............................ TTGGCCTTCTTTGCGTCGTCGTACTCGCGGAG 329828 28 100.0 32 ............................ AAGGTGATGGCGGAATCGCATCCGGTGGCTGC 329768 28 100.0 32 ............................ ACGTAGCGCAACGATCTACGTAAAATGCAGGA 329708 28 100.0 32 ............................ ACAGGCACCGCCACGAACCCGAACCTACCCTT 329648 28 100.0 32 ............................ AGCAGCGGGGTGTGACCATCAATGGCAGTGAT 329588 28 100.0 32 ............................ AGCTGGTGCAGTGCCCGGTGGACATGGCGCCA 329528 28 100.0 32 ............................ ATTACTACCCCCTAAAACCTGCCTAAATACCT 329468 28 100.0 32 ............................ AATGAAGAAAACGAAACAGACAACCAGGCTTG 329408 28 100.0 32 ............................ CTAACCGGCGGGCTTTTTCGTTTCCGGCTACC 329348 28 100.0 32 ............................ GAGACGCTCACTGCGCTGGGGTTGACGGTTTG 329288 28 100.0 32 ............................ GTGCAACTGTCCGGAATTGCCGGATTGTTCGT 329228 28 96.4 32 ....................T....... AAAGCCTGCAACGCTTTGGCGCAAGCCTGGTC 329168 28 100.0 32 ............................ ACCTGGTGATGCGCTGGCCAGCCGCGTGGGCG 329108 28 100.0 32 ............................ TTTCGAGCAATTGGAAGTCGGCAAGTCTTTCC 329048 28 100.0 32 ............................ ACAGGCGCCACTAGGCCAAGCTGTTTCGCTAA 328988 28 100.0 32 ............................ CCCCACCGTCTCCACGATATCCCCATTATCTT 328928 28 100.0 32 ............................ ATTGATGGTCACGCCCTTCTGCTGGCACAGGG 328868 28 100.0 32 ............................ TAGCTGCGCGCCGAGCATGTAGGAAACTCGGT 328808 28 100.0 32 ............................ AAACGGTCAGGCCGAGTCGGCCAGGTTGCACT 328748 28 100.0 32 ............................ AGCTGCATCTGGCGGTATGGCGCAAATCGCGC 328688 28 100.0 32 ............................ ATTTGGTTCCGGCGCGTTCGGTGCAAGCAATT 328628 28 100.0 32 ............................ AACGGAAATTCTGGATTCCTTGCCAGCACTGC 328568 28 100.0 32 ............................ TTGTGGACCCGCGCTCACTGAAGGTGGATTCC 328508 28 100.0 32 ............................ TAGCCGCTCTGCGATCTGCGCGATGGTGACCA 328448 28 100.0 32 ............................ GGAACCACGGTGCCGGCCTGGTCGTCGGCAGT 328388 28 100.0 32 ............................ TTCGCAGTTCTGTAATTTCCATAATAGCCGTA 328328 28 100.0 32 ............................ TTAGCGCCGACTCGTAGCTCACTTTGAAAACC 328268 28 100.0 33 ............................ CTCAAAAAGAAGGGGCGCCCCAGTGGCGCACCT 328207 28 100.0 32 ............................ TTCGGGCACGCATAGAATTCATCGCCGTCATC 328147 28 100.0 31 ............................ TGGCACACCATTTGGTTCCGGCGCCTTCGGT 328088 28 100.0 32 ............................ CATGTGGTAAAGCTGGTCACGTTCCGGCGTGC 328028 28 100.0 32 ............................ ACGTAGCGCAACGATCTACGTAAAATGCAGAA 327968 28 100.0 32 ............................ AAGCGGCAAGCCAGATGACTATGTGGACCTGG 327908 28 100.0 32 ............................ TAGCGGGCGTCTGCAATACAGCCCATGTTAAC 327848 28 100.0 32 ............................ ATTGCCGTCAAGTATGGCTGCAAAGCAGGCAC 327788 28 100.0 32 ............................ TCATCCACCCACAGCAGCAGGATTCGGGCCTT 327728 28 100.0 33 ............................ CTAACAAAACCCAAGCAAACCAATTCACGAAGC 327667 28 100.0 32 ............................ AATAAGGAGAAGTAAATGTTTGTTTTGCGTTC 327607 28 100.0 32 ............................ AATGAAGTTATCGAACTTGGTCAACTAGGAGA 327547 28 100.0 32 ............................ AAATCTTGCATATTGGTAAGGCGCGTGTTTCG 327487 28 100.0 32 ............................ GCTATCAAGCATGATGATTTGGGCGTGGTTGA 327427 28 96.4 32 ....................A....... GAATACATCGCCGCCCGCCAGCCGGTGACGAT 327367 28 100.0 32 ............................ GTGTTGACTAATGGCGGTGGCGGTTATTTGGC 327307 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 94 28 99.9 32 GTTCACTGCCGCGTAGGCAGCTCAGAAA # Left flank : CTTTGCAGACAGTGATGGCAAGTCCCTGGCTGCACGGCATGCGCGATCACCTGCTGGTCTCGAGTATCACTGCTGTTGCGGCCAGTCCCTCTTACCGGCAGGTCACACGGGTTCAGGCCAAAAGCAGCCCATCGCGCCTGCGACGTCGTGCCATGCGGCGTCACGGGATCGATGCCGAAACAGCGACCCAACGCATCCCGGACACGACAGCCGAACAGTTGTGGCTCCCGTTCGTGACGCTGGGCAGCCGTAGTACCGGCCAAGCATCATTCCCGCTCTTCATCTGCCATGGCCCCCTACTACCTAAACCCAAAGACGGCAGTTTCAGCAGCTATGGCCTGAGCCAGGAAGCGACCGTACCCTGGTTCTGACCCTTTTTTCGGTAAGCATGCGGCCTTCTTAAGAATCAGTCACTTAGCAGGCACCCTGAAGGAAAGGGTGCCTGCTCTTTTTCGTCAGTATTGTCTTATTTATCAATGCATTGAAGAGAACCTTCTCTT # Right flank : ATGTTCGAAATTAAAGAGGCTCATCGCGGATTCGTGTGGGTGCCTTGAGGCCCCTGAATCTGCGTTGAGCCTTGGAAACAGGCCCTTTCCACCGTCCCAGAAGGTGGTACATCCTGTGCTGACTTCTTGACGCGGTGTTCTGCATGAAAACGGGCCGTCGGCTGAGTGAGTTGTTTTCCTTCCCTGGCTTCGCGGCGGAGTCCACGCTCAAGGGCGTGTTCGGCGCCCCGAAGGCGCGGATCGTGACCTTGCGGCGCCGAAAAAAACGGCCGTGTGTTCCAACTGTGGCCATCGGTGTCGCAGCCGCTACGACAAGCGCCTGTGCCGCGCCCGCGACTTGCGGGCGGCCGGCTGGATGCTGTTCGTGGAGTTTGAGCGCTGGCGGGTCGATTGCCCGGGGTGCGGCGGCGTGCACGTAGAGCGGCTGGACTGGCTGGCCAAGAATCCGCGCTACACCGAGCGATTCGCCCTGCATGTGGGCAATCTGTGCCGAAGCATGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 541060-539647 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP033326.1 Xanthomonas cucurbitae strain ATCC 23378 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 541059 30 83.9 36 .A...TTA.-..................... TATGCAACGACCAGCTACGCCGGCATGACGCCGATG 540993 31 100.0 34 ............................... CCGAAGGCGCTGGACCGCAAGCGATTGGACGATT 540928 31 100.0 35 ............................... TCTCAAGCTGCGCCACGGGTGGGCAAGCTGCGAAA 540862 31 100.0 34 ............................... CTCTCCGGTGGCGGCTGAGCATGATTGCGTATAG 540797 31 100.0 36 ............................... TGGTTCGCCACGGTCAACGCAGCGTCGGACCAGGTG 540730 31 100.0 35 ............................... TGCACTGAGGAACTGAAGACGATTCCGATCACCAC 540664 31 100.0 35 ............................... GTGCGCTCATGTGGGCGCAAGAGGGGCGCCGGGGG 540598 31 100.0 35 ............................... CAGCCAATCATTGATGGTCTGGCGGTCCCGATTGG 540532 31 100.0 36 ............................... CCTGACTGCCGCCGAGCGTGCCGAGCTACGCGATGG 540465 31 100.0 35 ............................... ACCGCTGCGCCGGCATTGGTGACCGGTGCAGCGGC 540399 31 100.0 37 ............................... CTGGTTAGACACCATCACGTGCCCCAGCCACCCGGAC 540331 31 100.0 34 ............................... GCCAAGGATGCGGATCTGCCGCTCGCTGTCGTAG 540266 31 100.0 35 ............................... CAAACCAAGGCGTTCCACCTCGGCCTGCGCCTGGC 540200 31 100.0 34 ............................... GCCCTGGTGGGCGGAGGCGTTGGCGGAGCGGCGG 540135 31 100.0 34 ............................... TTCTGCGCGAGCAACGCGGCCCGGTCGGCGTCGT 540070 31 100.0 34 ............................... ACCTGACGCGCGCAGCAGCTTCGATGCCGCCGGG 540005 31 100.0 35 ............................... ATCCATGAAAGCGGAATGCGGATGCGCATCCAGGC 539939 31 100.0 34 ............................... CACGCCAGCGCGCTGGAATTCGAGGATTGCATCG 539874 31 100.0 34 ............................... AGCATCACGGCGTACGACCAGGGCGAGTGTTGGC 539809 31 100.0 35 ............................... TTGAACTTGAGGCTGTGGGTCTCGGCGTACTCCTG 539743 31 93.5 35 ........T.T.................... GATCTGGCATCGGTCATCGCCATGGCAGAGTTCAA 539677 31 83.9 0 .........C...C...A.T.......G... | ========== ====== ====== ====== =============================== ===================================== ================== 22 31 98.2 35 GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Left flank : TGAAGCGATCGCGCGCATCGGCGTGCTTTACACCATCGAAGCGGCAGCCAGCGCGCTGAAGCCCGATGAGCGTCTGGCTTACCGACAAGAACACGCCGTGCCGGTGCTATCGCGGCTGAACTGCTGGTTGTTGGAGTTGCAGCAGACGGTGATGGGCAACAGCGGCACCGCGCGTGCACTGGCCTATACGCTCAAGCGATGGGACGCGCTGACGCGTTATGTCCAGGACGGACGTTACCCGATCGACAACAACCTGATCGAAAACGCGATTCGTCCGGTGGCGCTGGGACGCAAGAATTGGCTGTTTGCCGGCTCAGCGCAGGCGGGCAGGCGCGCGGCGGCGATCATGAGCCTACTGGCCACCGCCAAGGCCAACGGTATCGAACCGCATGCCTGGCTGCATGACACCCTGGCGCGGCTGCCGACGACCTTGGATCGGGACATCGATCAATTGCTGCCGTTGCGCACGGAGTGAGGTTTCGGGGTAGGTGAGGTTGGCG # Right flank : ACCGTGAATCTACCTATACCCGGTAGTGACTCGGTGGATCTGCTAGCCGCCCCTATTGTCCGATCAGAAAGACCGCATGTAAGCGTCCGCCAACCTCACCTACCCCGAAGCCTCACTCCGTGCGCAACGGCAGCAATTGATCGATGTCCCGATCCAGGGTCGTCGGCAGCCGTGCCAGGGTGTCGTGTAGCCAGGCATGCGGTTCGATACCGTTGGCCTTGGCGGTGGCCAGTAGGCTCATGATCGCCGCCGCGCGCCTGCCCGCCTGCGCTGAGCCGGCAAACAGCCAATTCTTGCGTCCCAGCGCCACCGGACGAATCGCGTTTTCGATCAGGTTGTTGTCGATCGGGTAACGTCCGTCCTGGACATAACGCGTCAGCGCGTCCCATCGCTTGAGCGTATAGGCCAGTGCACGCGCGGTGCCGCTGTTGCCCATCACCGTCTGCTGCAACTCCAACAACCAGCAGTTCAGCCGCGATAGCACCGGCACGGCGTGTTCT # Questionable array : NO Score: 9.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.80,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 545973-544696 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP033326.1 Xanthomonas cucurbitae strain ATCC 23378 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 545972 31 90.3 36 C.TA........................... ACTTGCCGGCGGCTCAGTCCGTAGCGCCGCGACAGC 545905 31 100.0 32 ............................... GCCGCCGCCCGCTGCTTGTCGTTGGGATTAAG 545842 31 100.0 35 ............................... TTCTTCAACGTGCAGCGTCGTCAGGACGTTGGGCC 545776 31 100.0 34 ............................... TTATTGATGTTCATATACAAACACCATTCAAACA 545711 31 100.0 35 ............................... TGGCGTGTTGCCAAAGTTGTGCAGGAAAATTGCCA 545645 31 100.0 33 ............................... ATCTTCTGCATACAGGCGCTTTGCCTCAAACGT 545581 31 100.0 34 ............................... CCCTGAAAGCCGTTAAAAGCGGTGGCGTGGCCAC 545516 31 100.0 35 ............................... ATGCTTGCCAATCTGTTTGCGTAGAAGTTCAAAAG 545450 31 100.0 35 ............................... AGCCTATTCGGATGTCGGACTCTTCCCACACTGGC 545384 31 100.0 34 ............................... AGGTGCTGCAGGCCAGCGATTACGCGCAGAAGAT 545319 31 100.0 35 ............................... AACTTCGCTATCCAACAACTGCCAAAGTTCGTTAC 545253 31 100.0 34 ............................... GCTTAAATAGCTGCTTATAGTTCCTTCGCACCAT 545188 31 100.0 34 ............................... ATTTTTTGAATTTCCTGCCTGCTGCCTGAGGCGT 545123 31 100.0 35 ............................... AGGTCCACAGCAGGCGCGGGCGGGGCGGTGTAGAG 545057 31 100.0 35 ............................... TGGCAAGCACCCCCGCCGGTGTCGAAACCCCCGAG 544991 31 100.0 35 ............................... AGCATCCATCCAAGCCTGTGGCAAAGGACACGATG 544925 31 100.0 35 ............................... CGTCAGCAGCGCGCAGCACAACCGTGTAGGCGCCG 544859 31 100.0 36 ............................... CCAGCAATCGGACCTTGTTGCTCAAAAGCGAACAGC 544792 31 100.0 35 ............................... CTGGCGCAAGTTGGGCACGAGTCGGCCGGCCTGGC 544726 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ==================================== ================== 20 31 99.5 35 GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Left flank : GCGATCGCGCGCATCGGCGTGCTTTACACCATCGAAGCGGCAGCCAGCGCGCTGAAGCCCGATGAGCGTCTGGCTTACCGACAAGAACACGCCGTGCCGGTGCTATCGCGGCTGAACTGCTGGTTGTTGGAGTTGCAGCAGACGGTGATGGGCAACAGCGGCACCGCGCGTGCACTGGCCTATACGCTCAAGCGATGGGACGCGCTGACGCGTTATGTCCAGGACGGACGTTACCCGATCGACAACAACCTGATCGAAAACGCGATTCGTCCGGTGGCGCTGGGACGCAAGAATTGGCTGTTTGCCGGCTCAGCGCAGGCGGGCAGGCGCGCGGCGGCGATCATGAGCCTACTGGCCACCGCCAAGGCCAACGGTATCGAACCGCATGCCTGGCTGCATGACACCCTGGCGCGGCTGCCGACGACCTTGGATCGGGACATCGATCAATTGCTGCCGTTGCGCACGGAGTGAGGTTTCGGGGTAGGTGAGGTTGGCGGACG # Right flank : TCCTGAGCTATTACCGGAACTAAAAGAACTAATTGGTCGCGCCCTCAGAGGGTGTTTACATAATGATATAATAGTGCCATCTCATCACAGACAGTCATCGAAATGGGCCGCCCACTGAAGATTCAAGTCGAACATGAAGCTGTGTTGATGGACATCGTCGCGTCGGATCCGACGGCGACGTTGGAGGAAATCAGGCTTGAGCTTCTCCGCCGCTGCAACGTGCATGTTCATGAGCAAACGGTGGTCTCGACGTTGAAAAGGCTTGGTATCGAGCGCCGCCCTAGCCATGAGGTGGTAACGATCGAGAAAGTCCAGATCGATAAGTCGCGTTATGGCTATACCGATGCGCACGCTCGCCAGGAGCCGGAACAGACCTACCCGAGTTGCCTGACCAACGCCGAATGGGCACTGGTCAGGGATATTTTCGAGAAGGAAGGCGGGCGCGGTTTGCCGCCGCGCATCAGCCGCAGAACGCTGGTGGATGCGTGTTGTTATGTGGT # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.80,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,9 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 5 3948882-3949108 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP033326.1 Xanthomonas cucurbitae strain ATCC 23378 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 3948882 31 100.0 34 ............................... AATGATGGTTATATGATGGTTAGGCGGCGCCCCG 3948947 31 100.0 35 ............................... CCCTTAAGCGCCTGGCGCCTAGTATTTATATATGC 3949013 31 100.0 34 ............................... GCTTCAACTACTGCATCGCGCGAAATTTTACTGT 3949078 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== =================================== ================== 4 31 100.0 35 GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Left flank : GGCGGCCAACAAACGTCTGAACACGGCGTACCTGCTGAAAGAGTCCTTCGGACAGCTGTGGAGCTACCGCACCGAGCGTGGTGCACGGGAGTTCTTCGAACGCTGGAAGCAGAGTCTGCGCTGGCAGCGGCTTGCGCCCTACCAGACGTTCGTGGGGATGATCGAGCGGCACTGGGACGGCATCGCGGCGTACTGCAGGCCGGAGAACAAGGTCAGCCTCGGCCTGGTGGAAGGGCTCAACAACAAGATCCGGGTCATCCAGCGCAGCGCCTACGGCTATCGCGACGAGGAGTTCCTGAGGCTCAAGATCATCGCCAGCTTCCTGCCCGCGCTACCCGAAAATGCTCGATTGCACCCACAGTGATCCGCGAAGACCCAGAATAAATTTATATTTTTGCAAAAATACTGAGAGAAATTCGGCTTCCTCGTGTCCGCTCGTCAAGAGGTTCGCGGAAAGCCCAGTTTTTTTGTAGTTCTGGCAAACCCTTTATGCTAGGGCA # Right flank : CCTTTCGATAGTGGTATTGCAGAAAATTCGCTGCGCGTCGCGCCCTCACGTAAGCGTCCGCCAACCTCACCTATACAAGCAGCCAGCAGCCCGTTGGGATATCGCGTTCTTCCCAACGGATCTCCCCGATGTCTTCAAAGCACGATGATTGGTCCCACCGCATTGCTGCCTGGTCCGCCAGCGGCGCCACGCCATCGGCGTGGTGCCGCGAGCACAGTGTCTCGTTGAGCAGCTTCACCTACTGGCGCGGCAAACTTGCAGCGTCCGCAGCGCCTGCAGCACTTCCAGCCACACTACCGCTGCACATCACCCCCGCCGTTCCCACGACCAGCGTGGAGATCCGTCTCGCCGGTGGCATCAGCCTCAGCGTGGCGGCCGGTGATCCGTAAGCGTCCGCCAACCTCACCTACCCCGAAACCTCACTCCGTGCGCAACGGCAGCAATTGATCGATGTCCCGATCCAAGGTCGTCGGCAGCCGCGCCAGGGTGTCATGCAGCCA # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.20,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [53.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.27,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //