Array 1 933039-933463 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JAHLHC010000001.1 Streptococcus equi subsp. zooepidemicus strain SEZ_18-058 tig00000001, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence           	Spacer_Sequence                          	Insertion/Deletion
==========	======	======	======	==========================	=========================================	==================
    933039	    26	 100.0	    40	..........................	AGAAGCTAATCCAAGAGATTTAAGCATATTAGACGTCTCG 	
    933105	    26	 100.0	    41	..........................	AGCTGTTGGTGGACGACCGTAACGTTTCTCAAAGTGTCTCG	
    933172	    26	 100.0	    39	..........................	TCCTCTGAACAGAACCCCATAAATAATACCTAGGTCTCG  	
    933237	    26	 100.0	    41	..........................	TGATGAAGCTGCTACAAAGCGTAAGGAGGAGTTAGGTCTCG	
    933304	    26	  88.5	    41	...TT.G...................	TTTGGCATGCCTCACATCAGACTCATGTCTAGCATGTCTCG	
    933371	    26	  88.5	    41	...TT.G...................	CCGACACTGCGAACTAATCATTTGTGACTCCTTTCGTCTCG	
    933438	    26	  88.5	     0	...TT.G...................	|                                        	
==========	======	======	======	==========================	=========================================	==================
         7	    26	  95.1	    41	CCCCATACGGGCGAGTGGATTGAAAT	                                         	       

# Left flank :   TACCAGTCGCATGGATACCCTAAAAAATGGTGCACTGTTAGTATTGGAAAATTTATAAACATGGAGAAAAAGATGAAAACAATAATACGTGAGCTATTGGTTGAGGATGTTAAAGGAGATGCTGAGGTTGCTTATACCTTACTAGCTTCTGAGCATTCTCTTTTTGTTCCTTCCAAATTGGAGCAGGCTTCCGACAAGCTGATTCTAGAGGCTAGCCTTGATGACGTGTATGACTGGTCAGCCCTAGAGACGATGATCGTTGAGGAAAAGCTAAGGCATTTGCTAAATCTTAGCGAGCTGTTTGATCAGCTCTCAGACTCAAAGTTCACCTACAGCTTTACACCAGATAATCTGGTCTTTAACCGTAATGCAGAGCCGCGTTTGATCTTTCGAGGGATCAAGGATCAGGTTCCTCCTTACCAGCCGCTTGAGCCTGAGGCCTTTGTGGGTACATTGAAATTTACCAGAGTAGTAATTTGGTAAGAAATAGCGACGTCTCG
# Right flank :  TTTTGCTGCTATGCAAGGAGTGACACTGATTGAAGTCGCTCTCTTCTCGAGGGCGTGGTCCGTATCCCTGGTACTTTTCATGAAGGGATAAATCATATCACATTAATCAAGTTGATTTAAGTTTTTTATGGTACTATGTCAAATAGATAAAAATCTCTGTGTCAAGTGTAGTGGGTGACTGATAACTAAGCACGAGAGGAGACGAAGGTCGCCTTCTCTTTTATGATGTTCAAAGCAAGGTAAATACTTTTCTTGAAGTTGTCAACGTTTCTGAATCCAAAAGCATTGCGCTTGATACCTTTGATAAATTTGTTAGTTGCTTCAAGCTTGGCGTTAGAATAAGGCAGTTCAATGGCATTGATGATATAGTCGTTATAGCGTATAAAGGTGTTTAAAGTCGTTTTGAAGGTGTGATTGAGATGAGGCAAAGCATCTTGACTTAACCCAAAGAAGAGCTCTGTCTTCTTTTCTTGCAAGTGAAAAAGAAGTCATTGGTACAG

# Questionable array : NO	 Score: 9.01
# 	Score Detail : 1:0, 2:3, 3:3, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     CCCCATACGGGCGAGTGGATTGAAAT
# Alternate repeat :   GTCTCGCCCTTTGCGGGCGAGTGGATTGAAAT

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         F Score: 4.5/4.5
# 	A,T distribution in repeat prediction:     NA [7,7] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched CCCCATACGGGCGAGTGGATTGAAAT with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-6.80,-7.80] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: F [61.7-46.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [9.27,0.37   Confidence: HIGH] 

# Array family : I-C [Matched known repeat from this family],   
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