Array 1 92574-90014 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCZJ01000011.1 Lactobacillus johnsonii strain UMNLJ113 SNF2W3B3L6S23111_153_26, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =========================================================== ================== 92573 29 100.0 32 ............................. AAGATTGTAGCACCTTGATGCTGGGATAAAAA 92512 29 100.0 32 ............................. ATATAGTGCTAATGGATTATCGCCAACACTTA 92451 29 100.0 32 ............................. AAGGATTTTCTCTATAAGGTAGATAGCTAGCA 92390 29 96.6 33 ............................C TAGTTTTGACCCAACCGATAAAAGTAGTGCAGA 92328 29 100.0 32 ............................. AATATATGTGCAAGTATTCCAATCGTATAGTA 92267 29 100.0 32 ............................. GATAGTAGTAAAGTTGATAACGACCAAACAGT 92206 29 100.0 32 ............................. GTATCACGATTTTCATAAAATACAATATCAAT 92145 29 100.0 32 ............................. AGCCCACTTCTTCCAAGTTTGGGTTTAGAATT 92084 29 100.0 32 ............................. GTCACAACGAACTTCACCGCGAGAAGCCTATG 92023 29 100.0 32 ............................. AAAATCTGCTTGTTGTTCAGCATCTTTCTTAC 91962 29 100.0 32 ............................. AAATTCTGACCAGTGACGACCATAGCAATAGT 91901 29 96.6 32 ............................C ATGCCAGCATGCTATATAAAGCAAGTAATGCC 91840 29 100.0 32 ............................. TGGATTTAGTTCACTGTAAATCTGATACTAAC 91779 29 96.6 32 ............................C TAGTCTGCCAGCAGGGGCAAGCACAATTACAG 91718 29 100.0 32 ............................. TGTTGAAGTAAGTCTAGAGAATCACTCACGTT 91657 29 100.0 32 ............................. AGATTATCTGCGTTAGAAGATTCAAAGAAGGA 91596 29 100.0 32 ............................. AAAACATTGAAGTCAGGAATGCTTGAGGCTTT 91535 29 96.6 32 ............................C ATACATTGCGTTGGCTCTATGAATGTCTCCAA 91474 29 100.0 32 ............................. AACATTGGATAAATCTTCTTTTAATAAAGTAC 91413 29 100.0 32 ............................. TCTCCAGCAGAATAATTTAAGTCAGTTACCCA 91352 29 96.6 32 ............................C CAATGTGAAGCACACTTTTAGCAGCACTTACA 91291 29 100.0 32 ............................. TAACGTTCAATGCGGAAGAACCTAAAGCAACA 91230 29 100.0 32 ............................. GCTATTCATCGTAGCAAATTTACTCCACTCGG 91169 29 100.0 32 ............................. TAATGCAAAACAAGTAGGTCTTGCAGGTGGAA 91108 29 100.0 32 ............................. AATGGATCAACTGATGGTAATGGTAACTTGCT 91047 29 100.0 32 ............................. ACTTTTCTATCTTCATGTTCTTTAATTTTTTT 90986 29 100.0 32 ............................. AGGTACTTTCTTGCCGTTGTCACTAACACGGG 90925 29 100.0 32 ............................. AAAAGTCATTGCAGATAAGGATTAGTCCAATG 90864 29 96.6 32 ............................C AGTAAACTCAAAGAACAAGTTAAGACTTTAAC 90803 29 100.0 32 ............................. TTGAAGAACGCATATTCTGGAGCAATTACTCA 90742 29 96.6 33 ............................C GAACAGCACCAGTTCCAAACAAGTAAGCTACTG 90680 29 100.0 32 ............................. CAGTTTCTGCAACTTCAACAAACGGGTACTTA 90619 29 100.0 32 ............................. TAATGACGTGCCTAGGCTAATGAACAAGTAGG 90558 29 100.0 32 ............................. CCATATTGTGATACAGATTATCAAGCTGCAAA 90497 29 100.0 32 ............................. AGTAGAGCCACCTTCACCGTGCTTACTTAACT 90436 29 100.0 33 ............................. AATGCTGATCCTGAACTTGCACCTGATAAAATC 90374 29 100.0 32 ............................. ATCTTCTTGCCAGTATGATCCATTGAAGAAAA 90313 29 100.0 32 ............................. CTTTTACTGTAAGGGATGCAGTATCATACTTA 90252 29 100.0 32 ............................. AGAACGGTTGAGTTGCCTGTAAACCCGTCAGA 90191 29 96.6 59 ............................C AAATGCTTTTCTTGGGCTAATGATCCTATACCTTGTCATACAGTATGTTTGCGTTTTAT 90103 29 100.0 32 ............................. GCATTTGAAGATCGAATTAATGATTTCATCAA 90042 29 89.7 0 .....................C..C.T.. | ========== ====== ====== ====== ============================= =========================================================== ================== 42 29 99.1 33 GTATTCTCCACGTATGTGGAGATGATCCT # Left flank : AAGAATGGAAAAGTTGATGTATTTTATAAATTAATTAGGGATGTAAACTGTATTCCGGCCGATGTAAGTGAATTAACAGGTTTGAATATGAAGATATTAAAATCGAAAGGAAGTAATTTAATCGAAGTTTTAAAAATGCTAAAAGACTTTCTTGGAGATCGAATTTTATTAGGTTACAATTTAACATTTGATATTAGTTTTTTGGATATAGCCTATAAAAGAAATAAGATTTCTGGGTTAATTAATACTTCTAAAGATTTACTTCCGATAATTAAAAAGAATAATAAATTTCTTGATAATTATAAGTTGAGTACAGTATTGTCTGAATATAAAATTGAAAATCAAAATCCACATCATGCAGATTTTGATGCAAAATGTACGTATCAATTGGCCTTGAAGTTGATTAATGAGGGAAAATTAAAGCTTTAAAGTTTGGTAAAAGTAATGTATTTGGACGATTGCATCTTTTTAAAATGCTGCTATCATAGGATTCTTTTAGT # Right flank : GATGCCCCCAAGTATGAAGATTTTGCAGCGCCTTGGTGTTGGCAAAATTACTAACTCGTATTATCCAGTAAATAAAAAATGCCACATCATTCAAAACATACTATATCTATACAATCCTATGTTAATCAGTTGAATGACTTGATAGTTCATATTAGTTGATTTATATAAAAAATATCAAGAGAGAAAAAAATATGACACCATCAATTGACTAAAGGCCAATAGGATTTGCTACAATAAATGAAGGGACAAGTGAACGTAGTTTATTAGAAAGAAGAACAATGGCACTATGCTAAAAAAGCGATTCACGAGTCTACTATGAAAGTAGGAGATAGTTAGGTGGACGCGCATAGTAGTCAGATAGGTGTGGGTGCAAATCTCGCCTTGCTTATCTTAAAGAAAACGATACTCAATTGAGTATCGTTTTTATTTTGGTATTTTTCCTTAATATGGATGTAGGATTTTTAATAAAGATAATTCAAATTATCATCCCATAACTAAAT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGATGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.50,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 105577-102676 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCZJ01000011.1 Lactobacillus johnsonii strain UMNLJ113 SNF2W3B3L6S23111_153_26, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================== ================== 105576 28 100.0 33 ............................ TCATTAACAAACAAACTACAATCGGGAAACCTA 105515 28 100.0 33 ............................ TATCAAACTCTTCTAAAATTGTCCCTTCTAGGT 105454 28 100.0 33 ............................ CTTCCTAAATTGCTTACTTGCTACAAAAATACC 105393 28 100.0 33 ............................ TCATAAACTTGACCCGTGAAAATATATCACGGG 105332 28 100.0 33 ............................ TCAACCATTTTTTTCGACCCCCTTAATCTGTAA 105271 28 100.0 34 ............................ TAAACGCTATTGTTACACAACTATAAAGGGGATA 105209 28 100.0 33 ............................ TAATTTACTTGATCCATTTAACTCTTTTAAAGA 105148 28 100.0 33 ............................ TGTACTTCTTTCTTAGATTATGAGTTGCTTGTA 105087 28 100.0 33 ............................ TTGCAACGTCAATAGATGAAACATCATCAAAAC 105026 28 100.0 33 ............................ CTATGCTAAAACTATTAATTTTTTTATCATTAT 104965 28 100.0 33 ............................ TGACGATGGTATCAAGTTGCTTGATAGTTTGGA 104904 28 100.0 34 ............................ TTAAACCATTTTCTCGCTTGAATGATAGCTCACA 104842 28 100.0 33 ............................ TATACTGGCGTTGGTTTAGGTGGTTCAATCGGT 104781 28 100.0 33 ............................ TAATAGAGAAACGTGGTGAGAAAATCCACTATA 104720 28 100.0 33 ............................ CTATACTACTACTTACTCAAGGACACAAGCGGC 104659 28 100.0 33 ............................ TAAGCTCCAATTGAGCATCTACAATTAGGATGA 104598 28 100.0 33 ............................ CTACTGATGTGCAAGCTACAGCTAATGGACTGC 104537 28 100.0 34 ............................ TAGTCGTTCCTGTGCCTTCTATTTTTTTGATCTC 104475 28 100.0 33 ............................ TATTTGCTGATATGGATACGTGGGGCTTTTCTG 104414 28 100.0 33 ............................ TATATCACGGGTCAAGTTTATGATTTTAGGGTA 104353 28 100.0 33 ............................ TGATATCATAACCACTTAAAACAGCTATAATCT 104292 28 100.0 33 ............................ TCTTAAATGGAGACTTAAATCTTTCTAACTTGA 104231 28 100.0 33 ............................ TATGGGGATAGTTTAGAGCTAAGAAGGCAAAGA 104170 28 100.0 33 ............................ CTTCGGCACTGATTACACTTGCAGTTTAGAAAT 104109 28 100.0 33 ............................ TCTCCCCCATATTCAAAGCACATGTCTTGCATA 104048 28 100.0 33 ............................ TAAGCATTAACAATCAGCTTTTAAAGTCGTCAG 103987 28 100.0 33 ............................ TAACTTCTTCAATTGCTTGACTTAAAAAGTAGC 103926 28 100.0 34 ............................ CCAACAAACGCTTTACTCGTGTGATTGATTCTGT 103864 28 100.0 33 ............................ CATCCAAAACAAGTAGCTGTTAGGCAGGTCGGA 103803 28 100.0 33 ............................ TCCATCGGCGGTAGCTACTATTGGAGAAATTAA 103742 28 100.0 33 ............................ TACGAAGATAAGGTCATTCCTGGACAACGTATA 103681 28 100.0 34 ............................ TGTGTAAATAATATCCTTATCAGGATTTTTTATA 103619 28 100.0 33 ............................ CAAAAAAAGCCACTCCAGAGAACTTAATCTCCA 103558 28 100.0 35 ............................ TGAATGGCTTTACAAAAAAAGAACAGGAGAATATT 103495 28 100.0 33 ............................ GCTACTAAAATTGCAACTGCAGTTCAAACCGCG 103434 28 100.0 33 ............................ CTATTAATGCCTTCATATCCATCTAAGTTATCT 103373 28 100.0 33 ............................ CAACGATTTTTATCACTCACAAGCATGGAGAAC 103312 28 100.0 33 ............................ TTTCATTGCGGGCGCGAAATAGCAGCGGCTTTA 103251 28 100.0 33 ............................ CAAACTTATTAAGACTTTAAAGGAGTACTAAAA 103190 28 100.0 33 ............................ TAACTACTCCATTATCTTCTCCTGCATGTTTCA 103129 28 100.0 33 ............................ TATTAGCCTTCACTTGTGCGTAATGCATTGCCC 103068 28 100.0 33 ............................ TAAAAAAAGCTGGTATAAATACCAGCTTAATAA 103007 28 100.0 33 ............................ CAAACTTATTAAGACTTTAAAGGAGTACTAAAA 102946 28 100.0 33 ............................ CGGTGGTGCAAGAATTGGTGTCGAAATCAAAGA 102885 28 100.0 34 ............................ CGAAGAATCTACCCATTGATTAGTTCCAATTTCA 102823 28 100.0 33 ............................ TTATTCTTCGCTGATAGTTTCGATCATTGGCAA 102762 28 96.4 32 .....................G...... TATTCCTCTAACTTGGCTGATGAAGTAGCCAA 102702 27 75.0 0 ..G..T..........A.A.T..A.-.. | ========== ====== ====== ====== ============================ =================================== ================== 48 28 99.4 33 GTATTCTCCACGTAAGTGGAGATGATCC # Left flank : ATCAAGTTTTTTGCCTTATTTTTGATTATTGTAGGTGGAATTATTTCTATTATTGGAATTCCTATAGCAAAGTTGCTATTTTTACTAGTATCACGTCAGAGAGAATATTTAGCGGATATTGGTTCAGTTGATTTGACACGTGAACCAAGCGGCTTAATTTCTGCTCTGTCTAAACTTGAAAAGCTAGAAGAAGGGGAGGGTACTCCACAAATTGGCTCACAAGATTTAGCCCTACAACATTTGTATTTTAATTTTCCGAGTGCTCATAATTGGATTAACTGCCTTTTCTCCGATCATCCACCTTTGGATAAAAGAATTGAGCGTTTAGAAAATAGTAATCAGATAAAATAAGATAAGCAAGACCAAATATCATGAAATGGTATTTGGTCTTTTTGTTGGGTTAAAATGTAGGTTAAGCACTTTATTTTTTGTTGATAGAAACTAATGGAAAATGATATTATTTGAATTAGAGAATGGCATTATATCAGGGATCTTTTAGT # Right flank : TAGGATATTAGCAAAAATAATTTATATTTGAGTGCTTTTTATCAAAATGACGCGATAAGTAGTAGTCATATGGTTTACTGGCCATAAAGATCATGAGAAGAGTTAAAAATTAATCACTCTATAAGTGACCTTTTTGATTTTTAATTAGAGTACTTACTATATTGTGTAAAACAAAATTATCGAAATGGTAAAGGAAGAAAATCAACTGTATTATTGGCCCATTAAACTTATTAAGAGGAAGCTACGATTAGAACTATATAACGTTGATGCTAAAGTAATTAAGCTAGGCCCTTTTGGGAAAAGTAGTGTACGATAATTCTGAATTTAAAAATTGTATAGTGCAAAAATCAAGCCTTTAATCTCTGTTCCGAAAAGAATGGCGAACCTAATTCAGCGAACTTAAAAGTTTTATCTCATTCATTAAGCGCTCTGGTAGCGCTTTTTGTTTTGTAATGGACTTATCGCTACTGATAGATAATCTAAAAAAAGTTAGTTACATT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTAAGTGGAGATGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //