Array 1 32024-33639 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEHEE010000010.1 Salmonella enterica subsp. enterica serovar Infantis strain SI-08 NODE_10_length_118290_cov_3.945076, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 32024 29 100.0 33 ............................. TCGTACACCAGCGCTTTACCGGAGTGTCCGTGC 32086 29 100.0 32 ............................. ATCAAATATCAGATAACCCCCGTCGGCAAACC 32147 29 100.0 32 ............................. ATCACATTCCTGAAAAATGACTCCCTTAGCGA 32208 29 100.0 32 ............................. GAAGATATTGAAAGCGCCCAATCTTCCCAGCT 32269 29 100.0 32 ............................. TCCAGCATTGACGCGAACCCTGCGCCGCTGGC 32330 29 100.0 32 ............................. GCTGAAATATTGCTATTTCCGAAGGGGCTGAT 32391 29 100.0 32 ............................. TCCCGCCTGAACAAAATCGACCACGTTATTAA 32452 29 100.0 32 ............................. GCTCCCGCGGGCGCTCCTGTTGGCCAGCATCA 32513 29 100.0 32 ............................. CGTCCAATACGAGCTGAGTGCGCACGCCCTTA 32574 29 100.0 32 ............................. CAGATCGACCGCCTGGAGGTTGAGGTGGTTGG 32635 29 100.0 32 ............................. GCGTGGATTGATTCTGATCGCCGTGGGCGGGC 32696 29 100.0 32 ............................. GAAACAGAGATCGCGTCCGATAATGCCGACAT 32757 29 100.0 32 ............................. AGAATATTCAACTCCAGCGGGAAAAAGACGCA 32818 29 100.0 32 ............................. AACTTTCATCAAACTGGATCGAAGGGCCACTT 32879 29 100.0 32 ............................. CCGGTTTTAGCTCGCTGGAAACCTCGCTTTTG 32940 29 100.0 32 ............................. ACGCCGAGGGTGAATATTTAGACCGGGACGCA 33001 29 100.0 32 ............................. GGATCATCAATGTGGGAAGTTATCACAACGGA 33062 29 100.0 33 ............................. CGAAATTCAGCGTCTGGAATGCAAGGATTTTGT 33124 29 100.0 32 ............................. GCTATATCCCCGAATCGTGCGCTACGTGAAAA 33185 29 100.0 32 ............................. ACGAGGTCATTTTCAGCACTCGTCAGGCGCTG 33246 29 100.0 32 ............................. ATGCCCTGTTCGGCAAAATCCCGCCACGCTGG 33307 29 100.0 32 ............................. TAAAACCGGTGCTGGATTTTGATGAAGACGAA 33368 29 100.0 32 ............................. CCATTCAACATCGCACTTAAGAACTTGTGCCA 33429 29 100.0 32 ............................. CGATATTTATCCAGACTGTCGGACAGGGTGGT 33490 29 100.0 32 ............................. CCTCATCGGGAGCCAACGCCGCGAGAATACGC 33551 29 96.6 32 ............................C AGCACAATCATTATTAGATGAACTTTCATCAA 33612 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAACAGTTTATAAACAACAATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGTCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATATGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGATATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 49922-51819 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEHEE010000010.1 Salmonella enterica subsp. enterica serovar Infantis strain SI-08 NODE_10_length_118290_cov_3.945076, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================== ================== 49922 29 100.0 32 ............................. GCGGAATACCACTATATAAAGCCCCTCAACCC 49983 29 100.0 32 ............................. ATTTTTACAAAAACTGGCCCCCTGAATTCATC 50044 29 100.0 32 ............................. TTGATTTTAATGGCGGGCGAATTGTATTTAAC 50105 29 100.0 33 ............................. TTTCCTGTAACATTCCGATATATAATTCTCCGC 50167 29 100.0 32 ............................. GCCCAATTGCCGGCGACGGTTTCCATGTCAGC 50228 29 100.0 32 ............................. TGGCGAAACAGGCCAGAGAACGCGAATTGCAG 50289 29 100.0 32 ............................. CGTGTTCGATGTAGGTTTCTTCCTGAAGGCGA 50350 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAA 50411 29 100.0 32 ............................. TTGGCATGGCTGGCGACGTAGCGAACAAAATC 50472 29 100.0 32 ............................. CATAAATTACTCGATGCGTACCTGTGAAATCT 50533 29 100.0 32 ............................. ATACAGTAGCAAAATAAAAAGGCCGCGTGAGC 50594 29 100.0 32 ............................. CAATGCCGTTTTGCCCGAGTTTTCACCGCCGT 50655 29 100.0 32 ............................. CTCTATTGCCGGGGGTCGAGATGGCCGCCTGC 50716 29 100.0 32 ............................. GTGATCCGCGCCTATGACGCAATGGTAACGAC 50777 29 96.6 32 ............................T GTAGCGCAGGGACTGGCAACGGTGCCGGGCGT 50838 29 100.0 32 ............................. CAGGAGACGGCCAGCCGCACCGGTGGCGGTGC 50899 29 100.0 32 ............................. GGCGTTTTATTCGACCTGAAAAAATGGATCGT 50960 29 96.6 32 .............T............... ACATCTCGCGGACAATAGCGATTTCCACCGTC 51021 29 96.6 32 .............T............... CGTTTCGTTCATTTATTTAGTTTCCTGTTTCG 51082 29 93.1 29 .............T..............C CTTGTTAAATACAGGCGGCGGCGGGGTTG 51140 29 96.6 32 .............T............... AACGGCGACGGGATCGTTTTTTGTGGCGAAAA 51201 29 96.6 32 .............T............... CAGGATTGGATTAATGAAGACGGGTACGAAAT 51262 29 96.6 32 .............T............... AGATTGCAGAATTATATTTCACGCTGGCAGCA 51323 29 96.6 32 .............T............... CTGTTGTTATGCGTTGGATCGTAATAGTTAAC 51384 29 96.6 32 .............T............... CTTGGCAGGGCTGCGCCGCAATGGCAGCAACA 51445 29 96.6 32 .............T............... GTCTTATAAATTGGGCTGATAGTGCCGCTGAT 51506 29 100.0 32 ............................. TACCTGCCGGGACTGGAGTGCAGGTAACCCCA 51567 29 100.0 72 ............................. CGGCCAGCCATTTAAACAGCGCTGCAGCGGGGATAAACCGACAGGGTATATGAGCTTATACGTCATGAACCA 51668 29 100.0 32 ............................. TCGTTGGTGGCGTTCGTCACCTGGCTGTCGGT 51729 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 51790 29 93.1 0 A...........T................ | A [51816] ========== ====== ====== ====== ============================= ======================================================================== ================== 31 29 98.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACATCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGTAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //