Array 1 594503-592705 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAHTR010000001.1 Salmonella enterica subsp. salamae serovar 1,9,12,46,27:l,w:e,n,x strain HAZEL-214 NODE_1_length_698497_cov_31.539290, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 594502 29 100.0 32 ............................. GCTCAAAAATCAGTTACAGACAATACTAACGC 594441 29 100.0 32 ............................. TCTTTGACGCTGGCAATCGCCACGTTGTAGAG 594380 29 100.0 32 ............................. CTGCATACTCCAGCAATTGTGCGGCGGCGTTC 594319 29 100.0 32 ............................. GCCCAGGTCATTTTTAATGAGGAATGGATAGT 594258 29 100.0 32 ............................. ATCCGCTGAAATCCCGGTGGATAACATACCGA 594197 29 100.0 32 ............................. AGCTGCGGGACGTTGAAAAGGACGGCTGCGGC 594136 29 100.0 32 ............................. CCAGTTCTTGGCCTCGTAAATATCGCCCTGTT 594075 29 100.0 32 ............................. CCAGATACCGCGATCTGTGCGAAAGCGTTTAT 594014 29 100.0 32 ............................. GGGATCGACTGGGCCAAGTCCGCAATTATGGG 593953 29 100.0 32 ............................. TAACTTTGTGTCGCTGCATACGGCAAAGAGTA 593892 29 100.0 32 ............................. TTGACGTAGTTAGCGTGGATGATGTCGGTTAT 593831 29 100.0 32 ............................. GGGCGACCTCCGTTAAATTATTTATTTGAAGC 593770 29 100.0 32 ............................. GCTTTGGCCTACATTCACTGCAAAACTTTGCT 593709 29 100.0 32 ............................. AAACAACGCTGTCCCAGATGCCGATGACGGAT 593648 29 100.0 32 ............................. TTCATCCATACGCTCACTGAATCCACGCTCCC 593587 29 100.0 32 ............................. GAAAAACCGGATGTACAGGACGGGCTTGCTGC 593526 29 100.0 32 ............................. CGGCTGGTTAGACGTTATCCGGGTTCAAATCC 593465 29 100.0 32 ............................. CTGTTATCATTGTTATTATCACTGATTTTATT 593404 29 100.0 32 ............................. CGATCAAGATGGATAAGCGCCTCTTCGCGGGT 593343 29 96.6 32 ...........................T. CCGAAATTGCTCAGAAAGTTTCCACCGCAGTA 593282 29 100.0 32 ............................. GCCACGACGCCTGACCCCATCGGGACAGACTT 593221 29 96.6 32 ..........T.................. CGACCTGTTCCGGAAATACCGCGCCCGCCGTG 593160 29 100.0 32 ............................. CGACGCTTCCATCGTCTGACAGGCCTGCTCGT 593099 29 100.0 32 ............................. TTGCTCATTGGGCTCCCCCCTCAAACAAAACC 593038 29 100.0 32 ............................. TTGTAGCCTTTCCAGTTGAGTTTGCATTGTTC 592977 29 100.0 32 ............................. TAATGCTGGCCACGACAGCGCAGCAGATTACA 592916 29 96.6 32 .........T................... CAGTGAAACGCGCTGTCGCGTATGTTGGGTTC 592855 29 100.0 32 ............................. GCCGCATCAACGCCAAACGGTTTAAATCCTCC 592794 29 100.0 32 ............................. ATACTGCGCGTTTCTGTAGCGCCGTAATTCAG 592733 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 30 29 99.7 32 GTGTTCCCCGCGAGAGCGGGGATAAACCG # Left flank : TGCTGTTCCCGTTCTCGCGTCTGGTGCATATCTGGAGCGTGCCGGTTGAGTATCTGACCCGTAAATATCAGCTTGTTCGCGCACGTCACTGATTGTGTGCTGATTATCTCAAGCCGCCGTGGGGCTGAGGCGTATTCAGCACTATAGCGGGAAAATAGCGCGGGCATGGAGATTGACTTCATGCCCGTTTTTTTGCATTTCCTATCGGGCTCATCCCGTATCTCACGACCTGCCGCAGACGCTCCCTTGAGCTCTTTGCCGACGATATGCGCAAAATCTTACTCCCCCTTGATGTGATGATGTATTAATCTCCGAGTTTTCCGTCATATGACACTCGGCATAGTATGTTGGTAGATTTTAAGAGAGAATCATGGGTGTGGTTTTTTATTATATGAAATCAATTGGTTATATGCTCTTTAATAATGCGGTATTGTTATTTATGTGTTGGTAAGATGTTGCTGCATGAAAATGTTGTTTATAAACATAGGGATGGCACTAGA # Right flank : GTCAGGAGGTGATTCACTTGGTACTGGCTGATGTGTTCCCCGCGCGAGCGCTGAGTTTGTGGGGTTAGTTCACTCCGGCAGGTTTTTTATGGCTGTTTGCCGGATGGCGGCATAAATGCCTTATCCGGCACCGATCTTATCTCGGAGTTGCATCGAACCTTCTCATCCTTCCCGTACAGAGAGATATGAGACACTATGCTTAACGGGGATAAGATACGCGACGGAAGTGATGGTGGTGGGGGAAGGATTATTCGTCGCTCCGCTCCTCACCCTTCGGGTCGTTGCCTGCGGCAACGCTTTCTCGCTGCGCTCGAATCGAACCTTAGTCGAAGCTTCTCATCCTTTCCCGTACGGAGAGATATGAGGCAGTGTGCTTAATGGGGATAATATACGCGACGGAAGTGATGGTGGTGGGGGAAGGATTCGAACCTTCGAAGTCGATGACGGCAGATTTACAGTCTGCTCCCTTTGGCCGCTCGGGAACCCCACCGGGGGTAATT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGAGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGAGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 487944-488886 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAHTR010000002.1 Salmonella enterica subsp. salamae serovar 1,9,12,46,27:l,w:e,n,x strain HAZEL-214 NODE_2_length_617953_cov_37.503603, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 487944 29 100.0 32 ............................. GGTCGGATCAGCTGCGGCGGATAGTCCATTCA 488005 29 100.0 32 ............................. ATTAGCGGCGTTTAACGTCATCAGGTTTTCAA 488066 29 100.0 32 ............................. AGAACTGACTGTAGGTAGCATTGTTATTGTTC 488127 29 100.0 32 ............................. GGACGTCTTTTTATTTCATCTCCTTTTCTCGC 488188 29 100.0 32 ............................. GTTTAGGGGGAACAAATCCGGGGTGAGGAATA 488249 29 96.6 32 ............................T AGATGGCCGCAAGACTCAGACGCGGCGGATCA 488310 29 100.0 32 ............................. AGTATGCAAAGTTGATTCTGTCGAATAGCGGG 488371 29 100.0 32 ............................. TTTGCGCGTGAACGTGGCTCTTGCGGTCGAGA 488432 29 93.1 32 ...........................TA CTTTTTCGCCGGTTAACGGTTCAAAATCCTGC 488493 29 100.0 32 ............................. AGATTATCTACCAGGTCGCTGGGGGCCGGTGC 488554 29 100.0 32 ............................. TAAACCCCTGTTTATAATCTTTGCTCACCTTT 488615 29 100.0 32 ............................. AAAATACAGTGTGGGAAAAAAGTAAAAACAAT 488676 29 100.0 32 ............................. AAATCGAGACCGATAGGCTGGCGGCGCACCCG 488737 29 100.0 32 ............................. ATGGCTATTTCTCAAAACTTTAAAACGCAGGT 488798 29 100.0 32 ............................. GGGGCAGGGAGCCGCCTCAGTTGTACCAGGAA 488859 28 93.1 0 .......................-.G... | ========== ====== ====== ====== ============================= ================================ ================== 16 29 98.9 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGTCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGCATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGTATTATCAATCTTACGGACGGCCTGTCGTTGCCGTCTGTGACTCATCTATTACCTTGCATTGTCTATTTTCTCTATACGAATTTCGATGAGTGTATAAAAGCACTGATAAATTTTCCCATAGCGAGGCATGGATCACGCTATTTTGGTAAATTAAAAGAAAAAATTATTCTATGAACTTTTTTGCATCAAAATCAGTAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTACGTTGGTAGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAACGATATACATTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCCGGTACAAACCTGTAAAGTAAAAAGGCCGCATTTTCCCAGGGAGGCTTTTATACAGGAGAAAGCCATGGCGTTAACGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCATTAAGGGCCAGACCAGGATTAAGCCTGTTGGTCCAGGATGAGTCTACGTCGATCTTGTTCGACACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACTTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCAGATATTGCGCGCGAACGCTATGCGGCAATGACTTTTTTCGGTATTACCCGAAGAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGGTGTACACGCGTGACCCTCTGCTGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 505034-505735 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAHTR010000002.1 Salmonella enterica subsp. salamae serovar 1,9,12,46,27:l,w:e,n,x strain HAZEL-214 NODE_2_length_617953_cov_37.503603, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 505034 29 100.0 32 ............................. TTGTTCATTGTTTGCTCCATAGCCCCGGCGAA 505095 29 100.0 32 ............................. CCTGAAATCGCAGCAAAACGCAGCGATACTGT 505156 29 100.0 32 ............................. CACTTCATGAACCGCGATACAGCGATTCACCG 505217 29 100.0 32 ............................. CGTTTTGCCGCTCTGCCACTGACCCGGTCGCC 505278 29 100.0 32 ............................. CGCACAGTGTCAGTAAGGAAGCGTGGGAAGTC 505339 29 100.0 32 ............................. TGACAATTTCAACGGGTAGCACGGTTGATCTG 505400 29 100.0 32 ............................. TTCGCGAGCCAGTGAGTAATCGTGAAATCGAG 505461 29 100.0 32 ............................. CGTTTTAAAAACATTTGTTAACTTTTAATATT 505522 29 100.0 32 ............................. TGGCAGGCGTTTGAGAGCATCTACCCGTCGCT 505583 29 96.6 33 ............................A GCGCGTCTAAAAAATGCGCCGTATTCACCTCCT 505645 29 100.0 33 ............................. ATGCCAAGCTCGTTCGCCTTGCTTGATGACCAC 505707 29 93.1 0 ...........................GT | ========== ====== ====== ====== ============================= ================================= ================== 12 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AGGTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCTGAGCCGGAATCTCTGGGTGACAGCGGACATCGGGGGCATGGTTAATGAGCATGGTGGTGGTGGTGACAGAAAACGTACCGCCGCGCCTGCGAGGGCGGCTTGCCATATGGTTACTGGAGATTCGTGCAGGGGTTTATGTTGGCGATACATCGAAACGCATTCGAGAGATGATCTGGCAACAGATTACACAACTGGGCGGAGTCGGAAACGTAGTAATGGCTTGGGCAACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGGGAAAACCGCCGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCCCTTGAAAATCAATGAGTTGAATGTTCTTTAATGATAAGGAATTGTTATCTTAACGTTGGTAGTTTGTTGAGCAGTAAAAAATCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTTTCACCAGCAGATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGTCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGACTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGACGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCGCTCATTC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //