Array 1 3238-750 **** Predicted by CRISPRDetect 2.4 *** >NZ_ORYY01000056.1 Xanthomonas fragariae strain ICMP 661 isolate ICMP 661, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3237 28 100.0 32 ............................ ACACTAGGCCCGTAGTGAGACCGGCGAGGTCG 3177 28 100.0 32 ............................ AACGTCTCTCCTCGTATACTATCGAATGTGTT 3117 28 100.0 32 ............................ TTACGGTCATGTCCTGGATATGGTGTCCAGGA 3057 28 100.0 32 ............................ AGCTTCGAGGAACAAATCTGATCGCTGCAACG 2997 28 100.0 32 ............................ AATCCGACTATCTTTAAGCATAGTCTGTCCGG 2937 28 100.0 32 ............................ TGATGGTTGCGGAAAATAAAGGTCTGATCCTT 2877 28 100.0 32 ............................ TACGGGCATCACGGCGAAAGGCACTCAGCGAA 2817 28 100.0 32 ............................ AAGGAGCAGTGATAAACAATCAGGGTACCGCC 2757 28 100.0 32 ............................ TTGGTCGGCCCAGACAGCATTATTCATCATGA 2697 28 100.0 32 ............................ CAAATTAAGAAGTGGGATACCGGAGTAGTAGA 2637 28 100.0 32 ............................ TACTGTTACTGTGGGTTGGCCCGCACTCCAGT 2577 28 100.0 32 ............................ ATCCGTCCGGAGCACCACCGGAGTAGGTCCCC 2517 28 100.0 32 ............................ CGCACGTGCTGGCGGAGAAAGACTGCTGCAAG 2457 28 100.0 32 ............................ GAGCTGTGTGCACCAAAGTTGCCCTCCTCGGG 2397 28 100.0 32 ............................ GTACGGCAGCACCCGCTTTAGCTGTGCTGAGT 2337 28 100.0 32 ............................ ACGACCGCCTCATGGCTTCCTGCGTGCAGCCC 2277 28 100.0 32 ............................ GACGATCTTCTGGGCAAATACCCGCTGAAACT 2217 28 100.0 32 ............................ TGCGTGCAGCCCTAGCGCGACTAGGCTCAGCA 2157 28 100.0 32 ............................ TGCTATGGCAGAACGGCTCAGAGTTTCGTACT 2097 28 100.0 32 ............................ CAGCGCTACCAAGATGCAAGCTACCGACATGA 2037 28 100.0 32 ............................ AAAACCATTTGTGCCCGTAGAGCTTTCCATCC 1977 28 96.4 32 T........................... TCGACGACGCCGAAGAGGTTCGCCAGTGGTCG 1917 28 100.0 32 ............................ ACCAACGACGGGTGTCGCGCGCACCTGGGTAG 1857 28 96.4 32 .....A...................... ACCTACGAGCCCCAGCCGTATGCAGAGGTTTC 1797 28 100.0 32 ............................ AGCCGCACCCTTGCAGACTGTACTCTCTGCAT 1737 28 100.0 32 ............................ TCCACGTCCTCTTGAACAACATGTTCAGGGAG 1677 28 100.0 32 ............................ TGCAGCAGGGGGAGGAACTTCCGTATCAAGAC 1617 28 100.0 32 ............................ TGTAGGAGCAGACGGGGACAATACGCAAGCAG 1557 28 100.0 32 ............................ ATTGCATACAAAGACGGCATCATCGCCTCGGA 1497 28 100.0 32 ............................ TTTGCGCCACACCGAAACCGAATTCCGCGACA 1437 28 100.0 32 ............................ TAAGCAGCGCGTTAAGAATACATTCGTGACCT 1377 28 100.0 32 ............................ TAGATGCCCTGATTGCAGAAGTCAGGACCTCT 1317 28 100.0 32 ............................ TCTATGGGGAAATCATTTTCGAAAAGTACATC 1257 28 100.0 32 ............................ TCCCAGGGCAGTCGGTGTCGCACCTTGCTTCG 1197 28 100.0 32 ............................ TTAAACCAAAACTCATGCCAGTCGTAGCGACT 1137 28 100.0 32 ............................ TGGCTGAAATTTACAAAGGGAGCAGTAACTCG 1077 28 100.0 32 ............................ GTGTCGGGATCTTCCTCAAATCTTGCAGGAGA 1017 28 100.0 32 ............................ TACTGCCACAAGAACCCCGGGATCGAGGATCT 957 28 100.0 32 ............................ TGATGCACTCGGCATACGCGCCACCGGTGGAC 897 28 96.4 32 ..........................C. GGGATGTCCGGATGCTGGCAGTGACGCGTTGT 837 28 100.0 32 ............................ ACATCAAAGGCTGCTACTGAAGCTCTGGATGA 777 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 42 28 99.7 32 GTTCACTGCCGCGTAGGCAGCTCAGAAA # Left flank : TTGCAGATGTTGATGGCGAGACCCTGGCTGCACGGGATGCTCGATCACCTGGCGGTATCGGCCATTCTCGCTGCCCCTGCCGACACCCAACATCGGCACGTCACCAGGGTGCAGGCCAAGAGCAGTCCCTCGCGCCTGCGCCGTCGTGCCATGCGCCGTCATGGGATCGATGCAGAGACAGCCGCCCAACGCATCCCGGATGCGGCAGCCGAACAGCTGCCACTGCCGTTCGTCGTACTGGGCAGCCGCAGCACGGGACAGGCGTCATTCCCGCTGTTCATCCGTCACGGCCCCCTGCTATCGGAGCCGACGAACGGCAGCTTCAACAGCTATGGCCTGAGCCAGGAAGCGACCGTGCCCTGGTTTTGACCCTTTTTCCCGGACAGAACAAAGGCTGCTTTAGAATCAACCACTTGGCAGGCACCTTGTTTCAAAGGGTGCCTGCCCTGTTTTGTCGGTATTTCTTTTATTTATCAATGGATTGATGAAGATCTGATCTT # Right flank : AATTCAAGGATGGCCATACGGGTTGGATTGACGTTTGATACGCCCAGGGTTCCGTAGACCCTCAAGACCCTCGTTGCGCGTAGCGCCGTTCAAACTCTACAGGGGACAGGTCGCCAGTTGAACCGTGGCGGCGGTTGGGGTTGTAGAACATCTCGATGTAGTCGAATACCTCGGCGCGAGCGGCGTCCTTGGTGGAATAGGTCCGCCGCCTGATCCGCTCGCGTTTGAGCAGTCCGAAGAAGCTCTCCACGGGTGCGTTGTCGTGGCAGTTGCCACGCCGACTCATGCTGCACACCACGCCATGGGACACCAGGAAACTGCGCCAGTCATCGCTGGTGTAGACAGACCCTTGGTCCGAATGAACCAAGCAACCAGCGTTGGGTTTGCGCCGCCACACCGCAGACAACAAGGCCTGCACGACCAACTCGGTGTCGGCCCGATCGCGCATCGCCCAGCCGACGACCTGCCGGGAAAACAGATCGATCACAACAGCCAGGTAC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //