Array 1 516487-516336 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGQB01000004.1 Moraxella caprae strain NCTC12877, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ============================= ================== 516486 31 100.0 29 ............................... GTAATGACTACACCATTTGTATTCAAATG 516426 31 100.0 29 ............................... TTGTGATGACTGTCCGCAAAATCCTGAGC 516366 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ============================= ================== 3 31 100.0 30 ATTCCACATCGCATAGATGACTTAGAAATTT # Left flank : GTACTCACAAACAGCAACCACAAAATCAAACCCAAACAACAACATTACGACACCTTAGAAGTAGATGAGTTTTGGACTTATGTTGGTAACAAGAAAAACAAAGTTTGGCTCATCTATGCTTATGACAAAGGCACAGGTGAGATTGTTGCTTTTGTGTGGGGCAAACGAAACCTTGCTACTGCCAAAAAACTCAAAATACAACTTACCCAACTAGGCATTACTTTCAACAAAATTGCTTGTGATGATTGGGATAGCTTTTTAACTGCCTTTAAGCACTCTTTAAAACAAGTTGGTAAACGCTTTACTGTGGGTATTGAAGGCAATAACACCAGACTGAGAACCTTCGTCAGGCGAGCATTTAGGAGAACTTGCTGTTTTTCTAAAAAGCTAGAAAACCATTTCAAAGCATTTGAGTTGGTGTTTCATTATATTAACTATGGTTGGGTTTAGCATACTTTTTAGACCAGAGCCAAAAAAAGAATGCTCACAGAAAACAACCT # Right flank : GGTAGTGGTCTAAAAAGTATGCCAAACTAGGTTTTCCGTTCGCCCTGAGCCTGCCTGCGGGTAGGAAAACCGTTAGGTTTCCCAAGCTCGCCACGAACGGTTTTCTTTGTAGCATACTTTTTGAACCAGAGCCTTATTTTTTACATGAAAAATGACTATCCGACCACTTAATTTTAAAAAATTACACCAAACAAACTTGATGTTTACCACGGGTTTGTAAAGGTATGCTAGCCTTGTAGAGTGCACACCACACCGCCCAAACCCACGCCCATTCATTGCATTTTTCAGATAATCACGCTACAATCATCACACTGCCAGTCCCAAAATCAAGCATAAGTCCAAACCCAAACCGCCATGAAAAAATTCTACCTAATCCGCCACGCCCAATCCGAATCCAATGCAGGACACGCCATTCGTCCAAACCATAAGATTGCCATTACCAAGCTCGGGCAAAACCAAGCGACAGACGTGGCGGACTGGCTCATCACGCACGTCCCTAC # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCCACATCGCATAGATGACTTAGAAATTT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.74%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.00,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [46.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 2 521758-517322 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGQB01000004.1 Moraxella caprae strain NCTC12877, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================================================================================================================================================ ================== 521757 28 100.0 32 ............................ AAGCAAAAACCGCAATGGTAGTTATCCCTGCT 521697 28 100.0 33 ............................ ATGATAGGTAAGGGTGGATGTTCTCTTTTTATT 521636 28 100.0 32 ............................ GTGATAGTCGTATTCCACGCATTGAACTTGTC 521576 28 100.0 32 ............................ TTTGACTTTTGGTAAAAAGTCGGTTTTTGATA 521516 28 100.0 32 ............................ TATCCAATTCGCACGGCAGGGGGCAAGGGTGT 521456 28 100.0 32 ............................ AACGAATTGACTAGTGAACAGCAATCTGAACA 521396 28 100.0 33 ............................ TCATAGGTTAGGAAGGAATTGTAACAGGTATGC 521335 28 100.0 32 ............................ CGACCACGAAACCATAGAACAGGCATTAGCCA 521275 28 100.0 32 ............................ ATCAGCGTGTTTCATCATAATAAGCCAACCAC 521215 28 100.0 33 ............................ CCGCCTATCGTGGAGGTGCTATGTGTGGATAAT 521154 28 100.0 32 ............................ TAAGTTACCAGTTTTGCTTTATGACTACTATT 521094 28 100.0 33 ............................ GCCACGATTTATTGCGTATGGCAATTCCAAGCC 521033 28 100.0 33 ............................ ACTTTTCCACCGTTGCCAACCCTTTTCCACCGT 520972 28 100.0 32 ............................ ACGCATTGAACTTGTCAAAGACATAAACAAGC 520912 28 100.0 32 ............................ CAAATGTCCACTAATTGCAACTGCCACCGCAG 520852 28 100.0 33 ............................ ATTGAAGAGTTTAAGCACCAATTAGACCCCGAT 520791 28 100.0 32 ............................ TAACAGGGGCTAAGATATGCAAGGGCAAAATA 520731 28 100.0 32 ............................ GTTTTGGAAAGTCAGTAAAATTATGCAATGAC 520671 28 100.0 32 ............................ AATTTGTGGTGGGAAGTATTCGGCGTAACGCT 520611 28 100.0 32 ............................ TGTGTGATTTTTAATACGCATTTTCATAACAT 520551 28 100.0 32 ............................ TGATAGTCGTATTCCACGCATTGAACTTGTCA 520491 28 100.0 32 ............................ TCTATGGTTGGTTAAGGGTTTTAGAACCCTAG 520431 28 100.0 32 ............................ GGGTTATTATCGTCAAGAAGTACCCGGTCATT 520371 28 100.0 32 ............................ TGAAATGCGTGAACTATACAAAAACCGTGATA 520311 28 100.0 32 ............................ CACCACAAATTGGAACATTTTAATACTTAAAC 520251 28 100.0 32 ............................ TCACATTGCTGGGCGGATGACAAAACCACGAT 520191 28 100.0 32 ............................ ATCAATGTAGCTATCATCAGTAACTGCAACTG 520131 28 100.0 32 ............................ TTTGGGAAAATTTACTTTGTGTTGCATACCCT 520071 28 100.0 32 ............................ TAGATGGTTCTAGTTTAAAAGTACCTATTTCT 520011 28 100.0 32 ............................ AGAACAAAAAAATATGACAAGAGCAGAAATAA 519951 28 100.0 32 ............................ TTGGGTCTTTTGATAATCGGTAAGACCAACAG 519891 28 100.0 32 ............................ ATTTGATACGCCTGAAATGCGTGAACTATACA 519831 28 100.0 32 ............................ ATGCATAATCAACCATCCCAACACCATACACA 519771 28 100.0 32 ............................ ACCCAACCCATTGGCAACCCCTACCTAAGCCA 519711 28 100.0 31 ............................ ATCATCGCCAACAGCTCGTCTTGATAATTCT 519652 28 100.0 32 ............................ ATAGTTGCAGTTACTGATGATAGCTACATTGA 519592 28 100.0 32 ............................ ATTGGTTATGGTTATTTTCTTGAACGCCTTTT 519532 28 100.0 32 ............................ ATATGACTGCAAAAGGGCGTTTTTATCATGAT 519472 28 100.0 32 ............................ GGGTTATTTTGTCTGCACAACTCAGGCATCGA 519412 28 100.0 32 ............................ AAATAAAATGGGCGTTGTTAATCATGCTTTGG 519352 28 100.0 32 ............................ GCGATAGTCGTATTCCGCGCATTGAAATCTCT 519292 28 100.0 32 ............................ TAGTGTGCTAGGACAAACGATTGGCAAAAGTA 519232 28 100.0 32 ............................ ACATTATCAAGCCGTATTCAGAATTGACAAGG 519172 28 100.0 32 ............................ ACGCATTTTGGATTTAAAACATGACGGCTATC 519112 28 100.0 33 ............................ ATAAAATATTTATGCATTTATACATAAATATGC 519051 28 100.0 32 ............................ CTAACCATAGGAAACCAACGCTATGAATAAGT 518991 28 100.0 32 ............................ TGTTTGTGGCACGGATTCAATGCCTTTTTAAG 518931 28 100.0 32 ............................ AAGCGGAGTGGGAACGCCAAGCCCAACGCCAA 518871 28 100.0 33 ............................ TTGCTGAAATCAGACAAACAAAAACCCCTAGCG 518810 28 100.0 32 ............................ CCGAACTTTGCAAATACTTAGACTTTCGTAAT 518750 28 100.0 33 ............................ AACAATCAAAATGAAAATCGTTGTATGATTCTT 518689 28 100.0 32 ............................ TAGTAAAATCAATGACTTAACAAAAAATTCTA 518629 28 100.0 32 ............................ TTACCCTCAAAATTCTCCACGCCTTGCAACGC 518569 28 100.0 32 ............................ TGCCAGCCCTTGCTACATAAGCTCTCAACGCT 518509 28 100.0 32 ............................ TTGCTCGTGCCACATCATTTAGCATTGAGGGT 518449 28 100.0 32 ............................ TCTATTTAGCTAGATTGTTTTTGATTAAGTTT 518389 28 100.0 32 ............................ TACTAATAGAGGATACTAATATGGGAACTTCA 518329 28 100.0 32 ............................ TTGACAGCTTACTAAAAGCTATTGTTAAACCC 518269 28 100.0 32 ............................ TTGCCAATGCCAAAGAGATGGAAATTGTGCAA 518209 28 100.0 32 ............................ AACTAAAAGAGGTTGTTATGAACTTGTCTTTT 518149 28 100.0 33 ............................ TGCCATTTTTATTGCATTATACTTTGGTTATTC 518088 28 100.0 32 ............................ AGGAGAAACCCAATCCACAGGAGAAACAAAAT 518028 28 100.0 32 ............................ TTTTGTTGCAGGTGCCCAAACATTAGAATTCC 517968 28 100.0 30 ............................ AAAACCCCCCTCTCTTTGCACAAAATGACA 517910 28 100.0 32 ............................ AACAACCGCCCCTAATGGGGCTAAGGAAAACA 517850 28 100.0 32 ............................ TTGTAAACTTCTAGATGAGAACAACACGCATT 517790 28 100.0 32 ............................ GTCCTAGCTGTTTTGCTTTTAGATGTTGGGCT 517730 28 100.0 33 ............................ GCTGTCCATCAAAGACTTTGCCATGTCCTTACC 517669 28 100.0 32 ............................ TCAATGGCGTTATTCTGCCAATATTTATTTTG 517609 28 100.0 172 ............................ TTTTTGGCTCTGGTTCAAAAAGTATGCTACAGAGAAAACAGTTCGTGGCGAGCTTGAAACCTAACGGTTTTCCTACCCGCAGGCAGGCTCAGGGCGAACGGAAAACCTAGTTTGGCATACTTTTTAGACCACTACCGAAATTTTTTAATAGGTGCATTATGAACTTTGATGA 517409 28 100.0 32 ............................ ATGGTTACGCCTTTATGGTAGGTTTGAGGGGT 517349 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ============================================================================================================================================================================ ================== 72 28 100.0 34 ATTCCACATCGCATAGATGACTTAGAAA # Left flank : TCAAAGCGATAGCGGACGTTGGCGAGCGAGCGACAGGCTATGTGGTGGTGGAGCGTTATCGCCATTATGACTTGGGCAAGCAGGTGGAGCGGTTTGCTGATTTTAAAAATTTGACAGTGGAGCAAGCGTTGGAGCATTGCCTTGCCCACAAGAAAAAAGCCAAAAATTACCCCTTTGTCCGCCTAAAAAGTGAGACCAACCAACGGCAGTATCATCTGCATGTCCGCCAATATACGGTCGCCAAGCCACAAACGGGGGTGTTTAACACTTATGGCATTACCAACATTAATGACGAGACCAAGGCAAGCGTTCCGCATTGGTGATTGGGGTTGGTTGTGCTAAAATAAGGGGCATGATACAGGTTTACACCCTTTATTTTTTGACTATTTAAAAACTTGATAAAAATCAAACACTTATAAACAGGCGAAAAAACATTGGGTAAACGCCCAAAATATGGCTGTAAGCCTTGATATAAGTGGGTTTTATGTTGTATAATTCTT # Right flank : ATAAAAAAAGGGCAGTGGTTCAAAAAGTATGCTGTAACAAAAACTAAAAAGACAACTTAACCAAACAGTGGTAATTTACGGTTATGAAGACGACAATTACCATTACTTGCCCAAGTTGCCTATGTCATAGTATAAAGAAAAATGGCGTAAAAAGCTATGGCAAACAAAATTATTTTTGTAAAAATTGCCACAGACAGTTTGTCCAACAGTCAGAACTAAGCTACAAGGGCTGTTATTTGCACATAGACAACAAAATACGCTTAATGCTTGCTCGTGGGTGTAGCATTGCAGATATTGTGGTAATTGAACAAGTGAGCAAAGCAAAGGTGCTAAGTGTACTCACAAACAGCAACCACAAAATCAAACCCAAACAACAACATTACGACACCTTAGAAGTAGATGAGTTTTGGACTTATGTTGGTAACAAGAAAAACAAAGTTTGGCTCATCTATGCTTATGACAAAGGCACAGGTGAGATTGTTGCTTTTGTGTGGGGCAAA # Questionable array : NO Score: 3.08 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.17, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCCACATCGCATAGATGACTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.00,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 3 1043440-1042157 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGQB01000004.1 Moraxella caprae strain NCTC12877, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1043439 36 100.0 27 .................................... TTTGGCGACATGGTAAGTAACCTTACT 1043376 36 100.0 29 .................................... AAGTTGTTGTTATTTTATTTGCTTATATA 1043311 36 100.0 29 .................................... TAGCAAATCAACAGCAGTAATTAAGTAGT 1043246 36 100.0 27 .................................... TTAAAGGTATGATATGGCAGAACAAAA 1043183 36 100.0 30 .................................... CGAACTAAAACGCAAGCCTGTCAGTGAGTT 1043117 36 100.0 26 .................................... GTGGGTAGCCCCTATAAGTTGACTCT 1043055 36 100.0 8 .................................... GTGTGTGT Deletion [1043012] 1043011 36 100.0 28 .................................... ACGCCCCACGAAAGCCCAACAAGAGCAA 1042947 36 100.0 28 .................................... GTTCCAAAAGCCATAGACTTGCTTTGGC 1042883 36 100.0 28 .................................... CCAAATCCAGAGCCGACTGCTCCACACT 1042819 36 100.0 27 .................................... TCGTTTTGACTGATGATGTTCTGCACC 1042756 36 100.0 16 .................................... GTGGGTGTGTGTGTGG Deletion [1042705] 1042704 36 100.0 27 .................................... TAAAATATGGACGTGATTTTTACCAGT 1042641 36 100.0 28 .................................... GTAATGAGAATAAATAGAAGGTCTCATA 1042577 36 100.0 29 .................................... TATTCCCTCAGGTACAAGACAGATTAGAC 1042512 36 100.0 26 .................................... GTACTTATCTATTTGTGATTTTAACT 1042450 36 100.0 29 .................................... TCAGAGAATTGGCTTGACCAAGATTGGGG 1042385 36 100.0 26 .................................... TGATAACTTAACCAAACGCCCCTAAG 1042323 36 100.0 28 .................................... CATGAACACCGCCCCAATGACGGCATAG 1042259 36 100.0 29 .................................... ATTCTATTGCCAAAGCCGACATGAGAAAC 1042194 36 77.8 0 ......................GG.....AAACT.A | TA [1042161] ========== ====== ====== ====== ==================================== ============================== ================== 21 36 98.9 26 GTCTAACGACCTTTTAAATTTCTACTGTTTGTAGAT # Left flank : TGGTGTTGATGTTGCCAAGCTTTGACATACAAGCAAATGGAGAAGATGTATGATAATCGTCAGTTATGATATCAGTGATAATAAAGTGCGTGGACGATTTGCCAAATTTTTAATGCAATATGGCGATAGATTGCAATATTCGGTGTATGAAATCCAAAACAGCGAACGCATTTTAAATATCATCACCGAAAAAATAAAAGCAGAATTTGAGCCTTTGTTTACAGGGGCGGACAGTGTCATTATCTTTCGATTTACAGAACGTGAAGTATTAAGGTTTGGCCATGCCAAACATCGCAATGAGGATTTGTTGATTTTATAAAAAGTCTTGGAAAAAATGATGAGGTTTGTTATAATAAGAGAGATAAAGCACGCTCAAATATTTACTTTGCAAACCTCAGTCTTAATGCGTGATTTATCATGTTTTGTCGGTAAAAATGATTATTTTTTGTGCAAAAAACTTGCTAATCTCTCAAAAAATCATTAAAAATACCCCAAAACGG # Right flank : AATACATAATTCAAAGTTCCATTCCACTTAGCAAACAGTAAGTTCAAAGTGTTTTCTATCATTTTCTCGGATTTAGAGTAACATTTTGATTTTCTTCTAAATCTTGCTGTGAAATGCCTAATGAGACTATTATAGCCCTCTATGGTAAAAGTTTGAGCTTTGCTTGTCATATGTTTTGATTTTGGAATGACTTCAAGGTAAGATTTCCAGTAGTCACTACAAAACAGTTGAATGTTATGGATATTCAATTGATTGTAAAGTTGTTTAAAGGTGTTGGTGTCTCGTCTGCCACAAACAAAACCTAAGATTTGTTTTGTTGTTCTGTCAATGGCAACCCAAGTCCAGCAAGCGTTTTTTTATGCTTGGTGTAGCTATGAATCTCATCAAGCTCAACGATATCTATCGCTTGATTGCTATCTTGTTTGATTTGATGTTGTTCACCAAGTTTTTTAACCCATTGATAGACTGTGCCATAACTAATACCTAATATGCGACCAATT # Questionable array : NO Score: 2.98 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.22, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTAACGACCTTTTAAATTTCTACTGTTTGTAGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //