Array 1 22240-21800 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE386967.1 Cohnella thermotolerans DSM 17683 G485DRAFT_scaffold00050.50, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 22239 32 100.0 36 ................................ CGCTCGACCTGATGAATGTTCTGTTGGAATTGTACG 22171 32 100.0 33 ................................ TGGACGACCAGGAGTGTATGCCGGAAATCATGA 22106 32 100.0 35 ................................ TTCCTTGATCCGGATCAGGTCGGTTCGTCCGGCAG 22039 32 100.0 38 ................................ AGGCTTGCTGATCTTGATCCGTCCAAGAATGTTCCCGG 21969 32 100.0 38 ................................ AGGTTGGCGTCATGTATCACGTTTCGTTCCTTGTTCAA 21899 32 90.6 36 ....A....TT..................... CCGGCATATGGAACCGACGACTACTACGGTCTGGAA 21831 32 75.0 0 ...................AA.C.CGG...CG | ========== ====== ====== ====== ================================ ====================================== ================== 7 32 95.1 36 GTCGCTCCCCGCGCGGGAGCGCGGATTGAAAC # Left flank : AGGTGGCGGGCGATGATGGTACTTGTAACTTACGACGTCGAGACGACGACTTCGGCAGGCAGAAGACGCTTGCGCCAAGTGGCCAAGTATTGCATGAGCTACGGTCAACGAGTGCAAAACTCGGTGTTCGAATGTCTGGTCGATCCGTTGCAGTTTAAGTTGTTGAAGGCTAAGTTGGAAGAGACGATCGATCCGGAAAAGGACAGCCTTCGTTATTACATGTTGGGCAGCAATTGGAAAAGGCGAGTCGAGCATGTGGGGGCAAAGGTAAGTTACGATCCGGAGGGATTGTTGCTTCTGTAAGAGGAAGCGGTTCAATGTCAAAGAGAGTGGTGCGAACCCGAAGCTCACATGGATTTCCGGGGAGGTTCGCACTCCTTGCTACGCTGGGGCTTTCGGGTATTTCGGAAGGAAAAGCGCTTTATGGAAGAGGCAGAAATGATAGGTTCGCGAAAAACATGCTGAAAACCCTTGATACTAAAGGCTTTATCGGCTATGCT # Right flank : ATGGCCGATGCGGCGCTTAATCGCACTTCTCACCGGTGCCTGCGCCTTTGCCTTTCTTCTTCGGAATGTGCGCGGAATTGTCCGCCAGCTTGTCCCCGAACTGATCCAGCCGCGAGGGGGCGGCCGCCGGCCCGTCGTTGTCCGGCTTGTTGTTGCGTCCCGTCATCGTTGTCACCTCACTGTCTGTAAAATGTTCATCCCCGGCCCAAATCATGCGTCCGCAACGGAATCCGCCGAAGCAACGCTTTCGAATATCCGTCTTGTGGCCTCCCCGGCGGCATGCTATCTTGTTAGTAGTCAGCGTTTGCGGGGGGATGAGGGGGTTGCCGGGAAACAGCCGAAGCCGAATAAGTCGCAGTCGCATCCGGCGGCTATGGCCGCTCGCGAGCCTTCTTTTGCTGGCTTTGCTTGTAAGCGCTTGCCAAGCAAATTCCTCCATTTCCTACAAGGTGATTTACGCCATGGACAACCCGGATAACGGCGCGCAGTCCGCCGTATCC # Questionable array : NO Score: 9.01 # Score Detail : 1:0, 2:3, 3:3, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCGCGCGGGAGCGCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.42 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 30925-31161 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE386967.1 Cohnella thermotolerans DSM 17683 G485DRAFT_scaffold00050.50, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 30925 32 100.0 36 ................................ ATGAAACGTCTGCGAAAGGCCTGCATGGACTGTCCA 30993 32 100.0 35 ................................ TAACGCGTATTATAATGAAGTGCGTGTGAAGACTC 31060 32 100.0 38 ................................ GCTCCTCATTTTCATCGGTTTTGTATCTTATAAAACAG 31130 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ====================================== ================== 4 32 100.0 37 GTCGCTCCCCGCGCGGGAGCGTGGATTGAAAC # Left flank : CGAACCCTAAGCTCACATGATTTTCCCGGGAGGTTCGCACCTCTTGCTGCGTCTGGGTTTTCGGGTTTTTGAGACTTAAAACTCATCGGGTTTCATGAGGTAAATTAGGGGTTCGCGAAAAAAGGCGGTTGAAGCCTTACAAATCAAGGCTTCCCAGCTATGCTGTCGCTCCCCGCGCGGGAGCGTGGATTGAAACGTCTTAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT # Right flank : TC # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCGCGCGGGAGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [1.7-1.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 5044-5477 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE386968.1 Cohnella thermotolerans DSM 17683 G485DRAFT_scaffold00051.51, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 5044 32 100.0 34 ................................ CCGTTTTTCATCACCCTGCCGCCCAATCGGCAAC 5110 32 100.0 38 ................................ AGTACCTCCGGGCTTCAACGAGTCGTGAAAGATACGCC 5180 32 100.0 36 ................................ GGTCATCTTACGTTAATGCCGCAAGGCACATTGATC 5248 32 100.0 34 ................................ GTCAGCTGCCGCTTTAAGTTTACTGGATACGTCA 5314 32 100.0 34 ................................ ATGGCTTTCCTAAGCCTCTTTAATGGGGTTGTCA 5380 32 100.0 34 ................................ TGAGAGACATCGATAACTATGTTGCGGTTTTGAT 5446 32 90.6 0 ......................A.......CA | ========== ====== ====== ====== ================================ ====================================== ================== 7 32 98.7 35 GTCGCTCCCCGCGCGGGAGCGTGGATTGAAAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGCGCCAGTCGA # Right flank : ATAGGCCTTCTCTACTTTACGTTCAATCCGCCAAACAACCGCAACGCGCAAAAAGACCGGCGTTCGCCACGCCGGCCCTCCTGCCCGCCGCCTCGCCAATCGCGAAGGCGGCCATCATCTTTATGTTCCCGGCGGCCACTTCACCGTTACCGCAGCCTCTCCCGGCAATCGGTAGACGCATGCGTCGCCCCCGCGGACGAAGCGGACTTCCCGCTCTTGCGGCAGCCGGTTGGTGACAATCAGCACGGCGGAGCCGTCCGGATTGCGGAAAGCCGCCGTCTCCAGATCGTCCGGCCAGTCGGGCGATTCGACGCGGCGCGCGCCGGGCTCCACGAACTTGCTGATATGGCCCATCGTGTAATAGTCCAGATTATAGACGACTTCCAGCGTCTGCGTGTCGATGCGCACCAGCCCGCGGCACGTGCTGTTGGACAAGACGGAAGGCCCGTTGCGCTCGTCGAGGGCGACGTTCCACCAGACGACGGAGTTGGCCCCGTTGC # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCGCGCGGGAGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [5.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //