Array 1 77576-76087 **** Predicted by CRISPRDetect 2.4 *** >NZ_FILR01000004.1 Streptococcus suis strain SS985, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 77575 36 100.0 30 .................................... TAGCTGGCCAGACGCTCGTCGGCTTTTGCC 77509 36 100.0 30 .................................... TGGGGAAAATTTCATTCATTGGCACTGTGG 77443 36 100.0 30 .................................... AACATCGTTTACATAACGACCAGCAGTTGA 77377 36 100.0 30 .................................... TCGCGGGCGTCTACCCGCTTAACAAAGACA 77311 36 100.0 30 .................................... TTATTTCTGAAACCGTACAAGATCAACTAA 77245 36 100.0 31 .................................... AAATTAACCTCTGTTGGTCAAGGATTGACAA 77178 36 100.0 30 .................................... CTAAGATGACAGAAAATATTAAAGATGCTA 77112 36 100.0 30 .................................... CTAATTCGTTTATAATGTTTTGATAGGAAG 77046 36 100.0 30 .................................... TTATTATTCTAAGTGTTGTTAAGCGTTGTA 76980 36 100.0 30 .................................... TATTAGTGATGGTCGTCCTGTTATGTTGAA 76914 36 100.0 30 .................................... CATTTACCCTTCATTATAAATTCTATGAAA 76848 36 100.0 30 .................................... TCCAAACACTCGAGAAAAAGCAGTCCCAAA 76782 36 100.0 30 .................................... TTTAATCAAACCAGTCACAACATCAACACG 76716 36 100.0 30 .................................... GCGATCAACAATCTACTCAATCCAACGCAC 76650 36 100.0 30 .................................... TAAGACCGTTGATTTGCAGAGCGGTATTGA 76584 36 100.0 30 .................................... CAATCCGCAATTTCTCTTTACGAGCTTCGA 76518 36 100.0 30 .................................... CCGCTACGACTATCCGCTCTTTCTTGTCGC 76452 36 100.0 30 .................................... TGAGGCGGTCAATCCGTTTGCTGACTTATA 76386 36 97.2 30 ...................................G AAACACAGTCGGTGTCATTGACTCAAATTA 76320 36 100.0 30 .................................... AAAAATTGCCAATCAATCCAGCTATTCCGA 76254 36 100.0 30 .................................... AACTACTCAATTAATCGGAAACTTAAAAAT 76188 36 97.2 30 ...........................C........ GACCCCGTCTTTTTCTTTCTTCATTCCATA 76122 36 94.4 0 ..........C...T..................... | ========== ====== ====== ====== ==================================== =============================== ================== 23 36 99.5 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC # Left flank : GAAAAACCAGAAGTGAAATCAATTATTGAAAAATTAGCAAATTCTATTACTGAACTAATCTCTTATGAATGTCTAGAGAATGAGCTTGATTTGGAGTATGATGAGATTACGGTTTTGGAGTTGATAAAGGCGTTAGGGGTCAAAATTGAAACTATCAGTGATACGATTTTTGATAAAATTTTTGAGATTTTACAAGTTTATCAATTTTTGAATAAGAAGAGATTTCTTGTCTTTATCAATGTGTTATCTTATTTGACGGTGGATGAAATTCAGAAAACTAGGGAGTATATTGAACTTTCCAATATGGATGTTCTTTTTCTAGAACCGAGAAAAAGAAAAGATTTCCCTCAGTATGTTTTGGATAAAGACTATTTCTTACTATCGGAAAATATGGTAAAATAAATACATACAGTACAAATATTAGAAACTATTCGAAACTGAAGTCTGGCTGAGACGAATGGCGCGATTACGAGATTTTGTGACAAAAAATAGTCTACGAG # Right flank : TGTTAAAAGACAAATTGATAGGGTAGTTAGTTTTAGAGTTGTGTTGCTCTAAAAAGTTCTTTTAATTCTTAAAAGCAATGTAGCAAAAATATTTAAGTGTCAAAAAGAAAGGGGATTGTAGATGGATTCAAAATCAATTATTATAACTTCTGGTTATAACAGTAGTAGTGAATATTTTAACTTTAATCGTCAAAATAATTACCAAAATAATTGAAAGTAAAAAGTATAGATGAATTTAATTTAAGCTTCATTTTTTTAGGATGAAAACTAGTGCACAGACAAGTAATTCTCTACCATAAACTTTCAAAGTTAAAATGATGATTAACAACATCCAATTTTCCTCCAAGATTTCTAACTGACTCTTGTCCCACCCCCTTTTCCATGCTATACTATATGTATTCGTTTTACTTCAAAGGAGACAAAGATGACAAACCTAAAAGAGCAGGTTGGGATTAAGGCGGCGGAATTTGTGACGGACGGGATGATTGTTGGGCTGGGAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //