Array 1 1841152-1838502 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040724.1 Klebsiella pneumoniae strain KpvST147B_SE1_1_NDM chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1841151 29 100.0 32 ............................. GAGCAGGCACCCGCCGCAACGACGAAGAGCGC 1841090 29 100.0 32 ............................. AAATCAGCCAGCACCACGATTCTGGGAAATTT 1841029 29 100.0 32 ............................. ACAGGCTTACCCGTATTGAGACGGTTGCTGAA 1840968 29 100.0 33 ............................. GAAACCCCATCAGATGACCCTCCCCATGTTGGC 1840906 29 100.0 32 ............................. TTGCCTGGTCTGCTTGGTGATGATCCGTGGTA 1840845 29 100.0 32 ............................. TACAGAACGACTGAGGCGGCGTGTATTGCATA 1840784 29 100.0 32 ............................. GATCTTAACTCTATTGCCAATGGCGCAATTCA 1840723 29 100.0 32 ............................. GGCGATGCGCGCTCTGCTGGCTATCGGTAAAA 1840662 29 100.0 32 ............................. AATGCAGCAACCGGCAAATATATCGCCGGTAA 1840601 29 100.0 32 ............................. GGGCTGCCGCACGCCTGGGACGAGTCGAGCCC 1840540 29 100.0 32 ............................. CCGCAATAACAAAAATAAATGAGGGTTAAAGT 1840479 29 100.0 32 ............................. GTAAATGGGAATGAGTAGAAGAGCGTCATTGG 1840418 29 100.0 32 ............................. CCCCCGCGCACATGCTTAAACGCGCTATCACG 1840357 29 100.0 32 ............................. GGCATCTGTTGTGTAATGTTGAGTTTTTTTCA 1840296 29 100.0 32 ............................. CAGGTTAAACATGTAAAAAATGACCGTCGCCG 1840235 29 100.0 32 ............................. CACATTGCCCGGTCTGAAAAGTATTTGAAAAT 1840174 29 100.0 32 ............................. TCCGCACAGTCAAACGCTCCAGACACCAACCC 1840113 29 100.0 32 ............................. CCGGAACACCACCAGTAACAGCTACTGTAGGC 1840052 29 100.0 32 ............................. TGACCCTGTTGATTTTGTTCCAGGTAATACGT 1839991 29 100.0 32 ............................. TTAACCTCGTCGTTCTGGTTTCCGCCCAGGAT 1839930 29 100.0 32 ............................. GAACCTGAATTCGAAGGGTGGGTCATCCTTCC 1839869 29 100.0 32 ............................. GGACCCCGAGCGACCCGGTCACCCTCCGACCT 1839808 29 100.0 32 ............................. CCGTCGAACGGCGGTTATATCCATCTTGAGTC 1839747 29 100.0 32 ............................. ACCGATCCCACAATTGCGGCGGTTGAGATTGA 1839686 29 100.0 32 ............................. GTTGGTAATTACTGCTGTGTGTTACGGATAAA 1839625 29 100.0 32 ............................. CCGATTGTCTGGCGGTCGAGCGCCATTTGCTC 1839564 29 100.0 32 ............................. TGCCGGACGTTGTACCTGTGAGTTAATTCTTC 1839503 29 100.0 32 ............................. CGATAACCGGGCGTTTCGACTGAACTCACCTC 1839442 29 100.0 32 ............................. TTAATACCAGGGGGCAGGTTCAGCAGGTCCCC 1839381 29 100.0 32 ............................. CCGCTTTAACCCGCTCCGGCAGATCCGGGTGA 1839320 29 100.0 32 ............................. CCCTCCGCTTTCAGGGTGTGGCTGATATCACC 1839259 29 100.0 32 ............................. CGCGCTGCGAATTTGTTGGTCGATTTCGATCT 1839198 29 96.6 32 .............A............... TGGGTAGAGGTTAACTGGTTATTGGTCATTGA 1839137 29 100.0 32 ............................. ATCGCGGAGGCCTTCGGTGTGTCTCTTTCCTG 1839076 29 100.0 32 ............................. CCGTTGTCAATATCTCCCGGCGTCCGCGCCAG 1839015 29 100.0 32 ............................. CACGTCCGGAAACCACGGGTTATCCGTGTAAT 1838954 29 100.0 32 ............................. CAGAGGTCCTTATCTTTTCAACGTCAAAGTCG 1838893 29 100.0 32 ............................. GCAATCCCAGAGCGCGAATATCTTGGGCTCTC 1838832 29 100.0 32 ............................. GACATGGCGCGCGAGTTTATCGACGCCTGCGC 1838771 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 1838710 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 1838649 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 1838588 29 100.0 29 ............................. GGGTTCACTTGGGTGAAACTGAACTAACT 1838530 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================= ================== 44 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCCTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : GTCCACTAACGTTATCGATCCTGAGAGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTAGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATTC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 300823-299820 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040726.1 Klebsiella pneumoniae strain KpvST147B_SE1_1_NDM plasmid pKpvST147B_virulence, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 300822 29 100.0 32 ............................. CAACCTCAATTCCTAATGGCTGTCTAAGGAAA 300761 29 100.0 32 ............................. CAGGGTTTGCCCTTTTGCACCGCGCAGCGGTC 300700 29 96.6 32 ............A................ AGCAACGTTTCCGGATTATATGGCTGGAACGT 300639 29 100.0 32 ............................. TGGTGCTCTCAACCGTCACCCGCTGGCTGGAA 300578 29 100.0 32 ............................. TGGTGTTGTCCACGGTCACCCGCTGGCTGGAA 300517 29 93.1 32 ............CA............... AGGTATTTGACCTCATCCAGAAAGGCACAGAC 300456 29 93.1 32 ............CA............... GCACCCTCACGGATACCTTTTGCACAGTGTTA 300395 29 89.7 32 ............CA..............C CTTAGAGAAGCAAAAACCCCACCGAGGCAGGG 300334 29 100.0 32 ............................. TTACTTTTTGGCAGTTGGTAAAACACTTTTGC 300273 29 93.1 32 ............CA............... CGAAAACGGCAACCTTCATAAAAACGTCTTTT 300212 29 100.0 32 ............................. CCGAGATTGAGTAAAGCAAAGTAACGGCGGTG 300151 29 93.1 32 ............CA............... CAGCGTCTGAACGGACGAAACATCCCTGTTGA 300090 28 93.1 32 ..........-..C............... CGAGCGCTCTCCTGGTAAATCGGTAGCTCGGA 300030 29 93.1 32 ............CA............... GCTGGATTTCCGTCAGTTGGTCAGCTGCTGCT 299969 29 96.6 32 ..............A.............. TTCCGGACTCCTGTTTCCGGCAGTGGATTAAA 299908 29 89.7 32 ............CA...........A... CACTACCAGATCCGAATGGACACCCGTAATGA 299847 28 82.8 0 ............CAC........-....A | ========== ====== ====== ====== ============================= ================================ ================== 17 29 94.9 32 GTATTCCCCCCGTGTGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA # Right flank : CATAAAAACCGCAATGGTGGGGCTTTTGTTATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCTTCAGGATAACCCACATTCTGTCAAATCTTGCAGGTTGCAATCAGCAAAGGCCTTACGTCGATAAATTCATGCCTTGAGCTGGTAAGGAAGTATGACGTTATAACTCTGCATTTCTGGTTGATTAAGGTAGGGCGGCATTCCTGCTTTAAAAACAATCAATAATTTTGAACGGTAGTCGTCTTGATCCCAACTGCTACCTGATGGACTAGGCACCTGCAAAGATCCAATTTATACTGGTTATATATACAGTGTGCGCCGGGAGACCGGTTAGAGATCAAGGGGTGAAAGTCCCCGACCATTGAAGGACCAGCAATCCACAAGGTCCCCGAGTCATGCGTTGCATACCGCGAGGTATGGGGCGAAGCGTTGACAGGGGTGTTGACAGGCCAGCCATTGAGCCACGAAATGTATATTAAA # Questionable array : NO Score: 5.54 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.53, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGTGTGCGGGGGTTATCGG # Alternate repeat : GTATTCCCCCCGCATGCGGGGGTTATCGG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //