Array 1 14687-13866 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXTH01000101.1 Salmonella enterica subsp. enterica serovar Heidelberg strain NCTR-SF152 NODE_101_length_14734_cov_1.27145, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 14686 29 100.0 32 ............................. TATCCCGGTAGGGATAAATTTCACAATCAGGA 14625 29 100.0 32 ............................. ACCTACGTCACGACAAGGAGATAGCCGACACC 14564 29 100.0 32 ............................. GTAACGACGGTTCCGGCGCTGGAAAAGGTGAA 14503 29 100.0 32 ............................. CTGTGCTTTCTTTTCGGCACGCTCGCACCGGT 14442 29 100.0 32 ............................. GGATCTAACGAGCTGTAAAAATTCCGTGTTTT 14381 29 96.6 32 ............................A TAAATTGCGGTTTTACGGTTCGCTGAATGTCG 14320 29 100.0 32 ............................. CACCCACATCCGATTTAGCTCCATATATCCCC 14259 29 100.0 32 ............................. GAGTGTACGAAATGTCCAGACAATCGAAATAC 14198 29 100.0 32 ............................. CATTAGACTCGTATGCGACCGCTATCGGGGGA 14137 29 100.0 32 ............................. AGCGGGAAAAAATCGAGAAATATATCGACGGC 14076 29 100.0 32 ............................. TCGCGCGTTAATGAGGCCTTGCGTACCTGGGG 14015 29 96.6 32 ............................T CGTTCATCGGCAGCGTCACGCAATATGAAGAT 13954 29 100.0 32 ............................. GGGCAGATCGCTATATTTAGCCCGCAACTCAT 13893 28 93.1 0 ........................G-... | ========== ====== ====== ====== ============================= ================================ ================== 14 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CAGCGGGGATAAACCGAGAAACCGCTTCGTCTTTGCCCGACTCGCTT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCGGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 11689-10622 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXTH01000122.1 Salmonella enterica subsp. enterica serovar Heidelberg strain NCTR-SF152 NODE_122_length_12528_cov_1.3691, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 11688 29 100.0 32 ............................. GGCGTTTTATTCGACCTGAAAAAATGGATCGT 11627 29 100.0 32 ............................. AGCTACAGGAACGCCGCAAGGCTGAAGCGCCA 11566 29 100.0 32 ............................. GCTAAAAAATTAGGGGGGGGCGTTGATGGCTG 11505 29 100.0 32 ............................. CCATTAAACCGTGGGGCAAGCACCGTGCCGAT 11444 29 100.0 32 ............................. AAATGGGCGACCAGCGGCATTTTTATGTTCCG 11383 29 100.0 32 ............................. CGCAATTACACTGACAATTCATCAGCACAGAC 11322 29 100.0 32 ............................. AATTATTTGGATTCGTTATGAATTTTAACAAA 11261 29 100.0 32 ............................. CGAATCCGACCTCTAAAATTATGCGTAGACCA 11200 29 100.0 32 ............................. ATCGCATCAATAGCCTGCTCAAACGTTTGGGT 11139 29 100.0 32 ............................. ACGATTCAGGACGTGCTGATTTCTGGGCTGGT 11078 29 100.0 32 ............................. ATTGGAATTTGTTGTGAAAAACACGGGCGCAC 11017 29 100.0 32 ............................. TGGCTGAAACTAGTCAATCCACCTCAATCTGC 10956 29 100.0 32 ............................. GAGTCATAGTATGAGCAGGACTGATTATTTAA 10895 29 100.0 32 ............................. GAGATGAGGCCATATCTGTACAAAGGGAGTTA 10834 29 100.0 32 ............................. AATGCTCTTTCCGTTGTGTGTTCCGCATAACA 10773 29 100.0 32 ............................. AAGACAACTCCTGTCTTTCCATCACTCGAAGC 10712 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 10651 29 93.1 0 A...........T................ | A [10624] ========== ====== ====== ====== ============================= ================================ ================== 18 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATTTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGTCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 29-240 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXTH01000592.1 Salmonella enterica subsp. enterica serovar Heidelberg strain NCTR-SF152 NODE_592_length_252_cov_0.690909, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 29 29 100.0 32 ............................. GTGGTTTCATCCTGATTAATCATCGAGCGCTC 90 29 100.0 32 ............................. TCCAGAAATAGATAAACGGTCATCGTGTGGAT 151 29 100.0 32 ............................. GCGGCAAGAGCGTTAAATACTGGCCTCAATGA 212 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GGTAACAGAATGAGCAAACCCACAATAGG # Right flank : GGGGAATGGTCG # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [26.7-6.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 302-28 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXTH01000069.1 Salmonella enterica subsp. enterica serovar Heidelberg strain NCTR-SF152 NODE_69_length_19971_cov_1.51846, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 301 29 100.0 32 ............................. CGCGAACAAATGCCCTTACCTGCTTAGTCTTG 240 29 100.0 33 ............................. CCCGCCGCCGTGGGGAGATCTCATCCGGCGTGC 178 29 100.0 32 ............................. CGGCAGAACTGCCACATGGAAACGGCAATAAC 117 29 100.0 32 ............................. GCACTCCCGGTATCGCCGCAGATACAGGCGTT 56 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 5 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCACCCCGTTGGGCGAGTTCGTGATATTGAGGCACTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTAACTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GCGGTCAGATTGTCAGTAAGATCGGAAG # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //