Array 1 84125-88713 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCXK01000011.1 Bifidobacterium bifidum strain BI-14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 84125 33 100.0 32 ................................. GGGTTGACGTATGTCGCCGTACCCGTCACCGT 84190 33 100.0 32 ................................. AAGTACCAAGTCTTGGTATTCCGGGCGCGGTG 84255 33 100.0 32 ................................. ACCGTAAAATAATGTGCAGCGTCGTAACATGC 84320 33 97.0 33 T................................ TACAACCCACAGACGTTGACCAACACAATGTAT 84386 33 97.0 32 C................................ AACGCGCCGGACGGGCTCACCGTTGCTGTCAA 84451 33 100.0 32 ................................. TGATATGGCGTATTGATAATGTCACGCGAAAA 84516 33 97.0 33 A................................ GCTTAGCGAATTATTTGATACTATCATGTCACG 84582 33 97.0 33 A................................ GGGTAGCGGCAATATTCGACACCGAAACAACGA 84648 33 97.0 33 A................................ GGCGCACGCGTCAATCAGGTCGCCACCAAGACG 84714 33 100.0 32 ................................. TTGTCTATGAGTTGCATACTGCGGTTGTATGC 84779 33 100.0 32 ................................. GATTACGTGCGAGACGACGACTATGCCGAACA 84844 33 97.0 32 A................................ TTGATGCCGAGCGACTGATAAAAAGCGTTCCA 84909 33 97.0 33 C................................ AGGTGTGGTCTCAACCAACGGCGCGTGGCCTCG 84975 33 97.0 33 T................................ TGCTATCGCTTGTTTGGCGCTGGTGAGTGCAGT 85041 33 100.0 32 ................................. ATGTATGCCATATCGTTGACGTGCCCGGCATT 85106 33 100.0 32 ................................. AACTCGCCGGACGGGCTCACCGTTGCCGTCAA 85171 33 100.0 34 ................................. ATAACGTCCTGCGCCTGAGTGCCATAGATTCCAT 85238 33 100.0 32 ................................. CCGGTGCTGGGTGCTCGGAGGCCACCGAAACC 85303 33 100.0 32 ................................. ACTCATACCCACCTATGCGCGTAGCTCAGCCG 85368 33 100.0 35 ................................. ATTCATGTCATCGATCTTGCCGGCTATCGCCGAGA 85436 33 100.0 32 ................................. ATCGACCTGCCGGGCAGCATCAAGACACTGCT 85501 33 97.0 32 C................................ ACGGCGGTAGCGGGCCTCAGATCGGCCCCATC 85566 33 100.0 32 ................................. TGCGGGTACCGTCATGCAAAACGTCCTGCCCC 85631 33 100.0 32 ................................. TTGAAAACGTCAAGCGGGTTTTTGAATGGTTC 85696 33 100.0 34 ................................. ACGTGAAACCATTTGTCTACGTAGTTGTAATACA 85763 33 100.0 32 ................................. AAGTGAGTCGGCGACTATTTCCACGGTTTGTG 85828 33 97.0 32 C................................ AGTGGCGCAAATGGTGGAAAACGGCGCAACCG 85893 33 97.0 33 T................................ TGGTGCGTACGTCGTAGAGGTACGCGAACATGC 85959 33 100.0 32 ................................. CAGCTGGATAAGGCAGATGTTCCGTATCGTAT 86024 33 97.0 33 C................................ ATACAGCGGTTTGAGTATGGGCATGATTTCGGA 86090 33 100.0 33 ................................. ACGTTAGATCAGCTCACCGGCGGGCTCGGCTAC 86156 33 100.0 33 ................................. AGCCGGAGTGGTGGGAGGACACGGACGACGCCA 86222 33 100.0 33 ................................. CAGGAGCATGTCAAGACACTGACCCTCGACCCC 86288 33 97.0 33 A................................ ACCCACGCCCTCGGCAAGATCATCATGCGGGCC 86354 33 100.0 33 ................................. CGTCAAGAGGTCGTCAACACGCCCAGCGACGCC 86420 33 100.0 33 ................................. ATCTCCTTACTGTTATTTGTTGTCCGCCCCATT 86486 33 100.0 33 ................................. TCGCCACGCTCCCCCCGAAGATTATGGAAGTTA 86552 33 97.0 34 A................................ TCCGCGGAGGGCTCGTCGGCCAGCAATTCCGCCA 86619 33 97.0 33 A................................ AGACACGCCCGCAGGACAGGGGCAGCTGGACGG 86685 33 100.0 33 ................................. TTCGCGGTCTCGGAGTTTGACGACTCGATGATC 86751 33 100.0 33 ................................. ACTGCCTCGTAAACGAGGGGCGGCGTGTAACAG 86817 33 97.0 33 T................................ ACGAAGGTCGCGCGGGGTACGTCCGCCAAGGTG 86883 33 100.0 32 ................................. GGGTTGCAATGGCTGGACGGGAAAACATGTCT 86948 33 100.0 34 ................................. TGTCAGGTTGCCGAGAGTGATGGTCGTGTTGTCC 87015 33 97.0 33 C................................ ACGTACTCGTTGCGGGCTAGGAGTTCGGCGCGG 87081 33 100.0 33 ................................. CGCATGGCTGTTTTGCTATCTACGTACATGCCT 87147 33 97.0 32 T................................ ACCGAACGTGATCGTTACGACTGCATGATAAT 87212 33 97.0 32 C................................ ATTTTGGTTGAGTCTTGGAGTGCGGTGGCCGC 87277 33 100.0 32 ................................. GCGGTGAGGTAGTCATCGCCTATTTCGTCCGG 87342 33 100.0 33 ................................. CACCACCTTAAGGGCGAGTGGCTTATCCCACGT 87408 33 100.0 32 ................................. TCTACCTATATAGGTTCTTTACAAAATCTACT 87473 33 97.0 35 T................................ GAAACCACCCAGGCACGCAAGACCAAGCACGTGCA 87541 33 100.0 33 ................................. TTTTACCGAGTACTCGGTCGCTGACATAGCCTT 87607 33 100.0 33 ................................. TGCGCTCGCGTATCGCCTCGCTCACGTATCCGA 87673 33 100.0 34 ................................. TCGGGCTTGTTGGAGGATGTCGCGGATGAGATTT 87740 33 100.0 36 ................................. TGCGGGGTGAGTCCGGCTTAAGTCTACCAAAGCGGC 87809 33 100.0 35 ................................. AAGCGCGACCGTGCAAAAGTATGCGGCGCAAGCGT 87877 33 100.0 34 ................................. GCGGCGCAGACCTGACCGGCGCAAACCTGAGAGA 87944 33 100.0 35 ................................. CTGGCCAACAGCGGCAAGCCGATGGTCAACGGGCA 88012 33 100.0 33 ................................. GACACCACCCGGGCACGCAAGACCAAGCACGTG 88078 33 100.0 35 ................................. TCGATATCGGAACGACGACGTTCGGCTTCCTTACG 88146 33 100.0 33 ................................. ATCCTTGACCCCCTTGTCAAGCTCGCGGAATGC 88212 33 100.0 33 ................................. GGTTTGACGATCGGGGGAGTGACCACCGTGGCT 88278 33 100.0 33 ................................. CTCGCGAGGTCGGCGCGCATGGTCTCGGAGCGT 88344 33 100.0 34 ................................. GTCTCGAAATGGAGCCGGCCTTGGACGAACCGAA 88411 33 100.0 34 ................................. TGATTAGCAAAACGCAGATGACTGACATTGCCGC 88478 33 97.0 35 ................A................ TCCCCGGTGGGCTCGGAGGCCAGCAACTCCGCCAG 88546 33 97.0 34 .....G........................... CAGTGGATTAAGCAATAACTACTGGTACAAACGC 88613 33 100.0 35 ................................. TGGTCTCCAATCGTGATCTCCACGTCGTCGAAAGA 88681 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 70 33 99.1 33 GTCGCACCCCTCACGGGGTGCGTGGATTGAAAT # Left flank : AAATACGGTCAACGCGTGCAGAACAGCGTTTTCGAGTGCTCCGTATCGCCGTCCGATTACCTGATTCTGAAGCATGATCTGGCGAAGATTATGGATGAGTCGCAAGACAGCCTGCGGTACTACAATCTTGGGGCGAAGTATTCTTCGAAGATTGAATATCGGGGAAGGCAGCGACATTTACCGGTCGATGGCGTGATGATGCTTTGACGCCGCATTGGCATGCGGCATTCGGCGGACTGGAGCGGTGTACGACGTGCGGAGATCGGCCGGTGCGAGCCTTGAGCTCTCATGAAGCACTGGGTCGTTCGCACCACGGTTCATGGCTTCTGAGGACGGTGTGTGTTCTTCTTGTCGTTTGATAACTCAAGAGTGAGTGATCTGCTGGCATATCGATTCAGCGGATTCGCATATCGGGGAAAATGCGGGTGAATCGTACGGTACAATTGATGCCGTGGAATGGGTGGAGTATCCATATTTTGAGATATGAAGTCCATTCTTGC # Right flank : TGAAGCGCTGCTGAAGGAAGTCAAGGCCGTGATCGACAATCCGGACGCCACCGCGAAGGACGTCGCGCAGATGCTCAAGCGGATGACGGACTTCGAGTACGAGTATGCGACTCCTGATCCCGATCCTGACCCGGCCCCGGGTCCCGATCCCGACCCGGAACCGGACCCCGACACTCCCGGTACGGATGACCCGTCCAAGCCCGGAACCGGCGACACGGATACGGACAAGCCCGGCAACAAGCCCGGCGACGGAGCGGAAGACAGTGGCAAGACCAACGACAAACCCAAGCCTCCGCTGTCGGCGACCGGCGTGAACGTGACCGCGATATCGGTCGCGGTCATGGCGCTCGCCAGCGCTGCGACGGTGCTGCTGACCATCAAGCGCCGTAGGGGCTGAACATGACCGGTGCCGGAGAGTCCAATGCTCTCCGGCACCGTCATATGTCGAACTCCTGCATAGGGTACCTTAAATCAGCCTGATCTGATAGACTGTCTGCGGG # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCTCACGGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCTCTCGCGGGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.40,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //