Array 1 8817-9559 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYPP01000025.1 Salmonella enterica strain CVM 43746 43746_contig_25, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 8817 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 8878 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 8939 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 9000 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 9061 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 9123 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 9226 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 9287 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 9348 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 9409 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 9470 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 9531 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ========================================================================== ================== 12 29 99.7 36 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAAATGTTCCCCGCGCCAGCGGGGATAA # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.25, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 50-382 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYPP01000038.1 Salmonella enterica strain CVM 43746 43746_contig_38, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 50 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 111 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 172 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 233 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 294 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 355 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 6 29 95.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CCAGCGGGGATAAACCGTGTCCAATTAACCCAAACTTTGCGCGCTTAATA # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 88301-89977 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYPP01000055.1 Salmonella enterica strain CVM 43746 43746_contig_55, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 88301 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 88362 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 88423 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 88484 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 88545 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 88606 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 88667 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 88728 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 88789 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 88850 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 88911 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 88972 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 89033 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 89094 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 89155 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 89216 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 89277 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 89338 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 89399 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 89460 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 89521 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 89582 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 89643 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 89704 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 89765 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 89827 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 89888 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 89949 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 28 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : | # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //