Array 1 53320-54964 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTSB01000020.1 Pseudomonas aeruginosa strain AZPAE14914 AZPAE14914_contig_20, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 53320 28 100.0 32 ............................ TGATCAAGAAGAACCCGATGGCGCCACTTGAG 53380 28 100.0 32 ............................ ATCCTATCGACGACAAAGTGCTCGAGCATCTC 53440 28 100.0 32 ............................ TGCCGGACCTGCTCCGCCACTGCGGACTCCAA 53500 28 100.0 32 ............................ AGAAAGCCAAGATCTACCGCTGGAGAAAGGCG 53560 28 100.0 32 ............................ GAAGAACATCGCTGCGGCGATCTGGGCCTCGC 53620 28 100.0 32 ............................ AGGGGTTCGTCCCTGGCCGAGGTGGCCCGCTC 53680 28 100.0 32 ............................ AGGAAACCAGAGCAGGAGGATGGACTATGACC 53740 28 100.0 32 ............................ GAGAACGATTCCGTCTTGTTGGAGCTTTCTGT 53800 28 100.0 32 ............................ CGACGAGCAACTGCGCTTGCGCGTGCGTAACC 53860 28 100.0 32 ............................ GGAAGGCTGGCGCTCGAACGGATGTGTACAGG 53920 28 100.0 32 ............................ TCCGGATCACCAGGGCGACAGATGGCCACCTC 53980 28 100.0 33 ............................ CTCTGGCGGTAACCTTCCATGATCTGCGCAGCC 54041 28 100.0 32 ............................ TGCATGCACATCGGCGAACTGCTGACGTGCTT 54101 28 100.0 32 ............................ TGGCGCCGCCCGATTTCACGTAGCTGCTCGAT 54161 28 100.0 32 ............................ TGATATCCAGCTGCTCCAGGAACCGCTGGCGG 54221 28 100.0 32 ............................ TGATTTCGAAGGCCGCGGGCGACTGATCCGGA 54281 28 100.0 32 ............................ TCCTTGCCGGGCGCGGCGGCGAGCAGTTCGCG 54341 28 100.0 32 ............................ TGTCCGGTCCCGGAAAAGACCAACGCGGGAGT 54401 28 100.0 32 ............................ TCTACGAGCAGACCGAGTTGAAAGGACAGGAG 54461 28 100.0 28 ............................ GAGTGTGAGGCCGGGCAAACGGATTTGT 54517 28 100.0 32 ............................ TTGACGGCCAATGCCGGCTTCGACTTAGCTCG 54577 28 100.0 32 ............................ TCTGTCACCTCCTGGGAGGCGGCCTCGGCCTG 54637 28 100.0 32 ............................ AGCCACTCGCGGGCCAGCTCGGGCGATAGCAC 54697 28 100.0 32 ............................ GTGTCGCCCAGCACCGTTCAGCGCTACTTCAT 54757 28 100.0 32 ............................ AGCAATGGAAAGCAGCGATGTGACCCGACCCG 54817 28 100.0 32 ............................ TGCAGGTCATAGGCGTATTCGAAGGACAGGCT 54877 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA 54937 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 28 28 99.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTGGGGTGGATTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATAAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 65188-63839 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTSB01000020.1 Pseudomonas aeruginosa strain AZPAE14914 AZPAE14914_contig_20, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 65187 28 100.0 32 ............................ CAAAGCTCTGGTGTGGTTTGCTCGCACTCAAC 65127 28 100.0 32 ............................ GTCTCGCGCACATGCGGAAACCAGCCGGCACG 65067 28 100.0 32 ............................ GATTCGGGGAACTCAAGCCGCTTGCTTTGCAT 65007 28 100.0 32 ............................ TGCTGGCGCTGATCAGTTGGAAAGGGCTTGCT 64947 28 100.0 32 ............................ TTCGAGGCCGACATGCTCGACCGCAGCAAGGT 64887 28 100.0 32 ............................ AATGGCAGCAGCGCGAAAAGCTCGCGGAGTTC 64827 28 100.0 32 ............................ TCGCCGATCAGCAAGATGGAGGCTTGGCTGGA 64767 28 100.0 32 ............................ CAGACCGGCATCGAGGCGCGTCGCGGCCATCG 64707 28 100.0 32 ............................ TGGAAGAACGCACTTGGACGGTCAGCATTGGC 64647 28 100.0 32 ............................ ACTCTGCGCCAGAGGTCAGCACCAGAAGATCA 64587 28 100.0 32 ............................ TATAACGATATTGATGCCGGATTTAGGCCAAG 64527 28 100.0 32 ............................ AGGTAGACGTCCTCGCCCACACCGATGTCGCG 64467 28 100.0 32 ............................ GTCCAGGCACGTTTGCTCGCGCTTTGATCTCA 64407 28 100.0 32 ............................ GAAAAGAGTTGACTGCACAGTGGGCATCACCT 64347 28 100.0 32 ............................ AATTGCAGGTGACCGACAGGCTTGCGGTACCA 64287 28 100.0 32 ............................ TTCTGCGCAAGTTGTTCCTCGGACATCCCCGG 64227 28 100.0 32 ............................ AGCTCGGTCGCCCCGGGGCGGCCGGCGTAGTA 64167 28 100.0 32 ............................ AGGTCGGGGATGGATCGAACCACCCGCGCGAC 64107 28 100.0 32 ............................ GTGCCCGGGGCCGACTCCGAACCCGACGAGCA 64047 28 100.0 32 ............................ TTGTCGCTGATATCGAAGGTGTCCCACTTCCG 63987 28 100.0 32 ............................ AGTAGCCGTCGGCGTTGTGACAAAGCCATTCC 63927 28 100.0 33 ............................ GCACGGTAGGTGCCGGCGCCCACGCCGGAGGCT 63866 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 23 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTGGCATCGCCCATCACAGGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGTAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCTACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //