Array 1 108145-107506 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUDG01000016.1 Escherichia coli strain CVM N33719PS N33719PS_contig_16, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 108144 29 100.0 32 ............................. CGACAAAATTCTCAAAACTCGATCAGGAAAAT 108083 29 100.0 32 ............................. CCACCGTTTTCGCCCACCAGGGCGCACAACCC 108022 29 100.0 32 ............................. GAAAAAGAGAAGGTAGAGAAAGCGGAATCTGG 107961 29 100.0 32 ............................. CAGGTCTATCGGGCGATCAATAAAATCGGTCA 107900 29 100.0 32 ............................. GCGCACCGTTGCGTCGAAAAGGCGCTGGAGAT 107839 29 100.0 32 ............................. TACGCTTACACAACGGGCGAATATTTTAACGG 107778 29 100.0 32 ............................. GAACCCAATAGTGAAATACAGCATCATTTTTT 107717 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 107656 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 107595 29 100.0 32 ............................. CTGCGTAGCGACCTTTGCTCTCAATTTCGTTG 107534 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 11 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACTTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAACAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAATCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAACTCTTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCAAACCTGACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCAGGATTGGTCGTCGCGGCTATTCCCTGACTGCGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1554-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUDG01000028.1 Escherichia coli strain CVM N33719PS N33719PS_contig_28, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1553 29 100.0 32 ............................. GCATTGACGCTTTAAACGACGACGGACGCCAC 1492 29 100.0 32 ............................. AAAACAGCCTTTAGATTAGTACCTGACGACCG 1431 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 1370 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 1309 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 1248 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 1187 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 1126 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 1065 29 96.6 32 .............T............... TTTTGATTTCATTAACGGCGCTCCCCATATTT 1004 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 943 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 882 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 821 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 760 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 699 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 638 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 577 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 516 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 455 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 394 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 333 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 272 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 211 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 150 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 89 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 28 28 96.6 0 ............................- | ========== ====== ====== ====== ============================= ================================ ================== 26 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : C # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-2] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //