Array 1 1-700 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGZZ010000008.1 Pectobacterium brasiliense strain NAK:470 KJBJNKIL_8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1 29 100.0 32 ............................. CGCAACTACTGAATAACTCACGTCATCACATT 62 29 100.0 32 ............................. TTACGGAAGAGAAGATAAAATTCCAAACTCAA 123 29 100.0 32 ............................. GGCCGCGATAGGAGATAATCAAGATGAAACAG 184 29 100.0 32 ............................. CGCGGTCGGCGTGGTGAGGTTACGGCTCTTGA 245 29 96.6 32 ............................T CAAAAAAAATCCCGCCGATTTCTGGGCGGGAC 306 29 100.0 32 ............................. GCCCAGAACAATAAAATGTGGCCACTTTTAGA 367 29 100.0 32 ............................. GAACGCCGTGGTTTCAGTCCATCCTCGGAAAA 428 29 100.0 32 ............................. GATTATCGGTATAGTTACACTCAATGATGAGA 489 29 100.0 32 ............................. CGCAACTACTGAATAACTCACCTCATCACCGT 550 29 100.0 32 ............................. GAACGGAAGAGAAGATAAAATGCCAAAATCAG 611 29 100.0 32 ............................. CGCGTCGTCAGCCTACTGTATGGGTTCGTCGC 672 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 12 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : TT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-3.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 36535-37112 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGZZ010000056.1 Pectobacterium brasiliense strain NAK:470 KJBJNKIL_56, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 36535 29 100.0 33 ............................. CATTCGTTTTCCTTTTCCCGCTAGCTCGTCAGC 36597 29 100.0 32 ............................. ATGGGATACCCCTTGTTGAGGTTCCTCAAACC 36658 29 100.0 32 ............................. CGTACACAAGTTCATTTTTCAGTGGCAACGCC 36719 29 100.0 32 ............................. CAGCGCAAACATAGGTTTTGCGTCGTCAATGC 36780 29 100.0 32 ............................. TTGTTGCTATTTCCCGCCTGACTGCCAGCGGT 36841 29 100.0 32 ............................. GATGACTGGCTGATATCGCCCCGCGTCATAGG 36902 29 100.0 32 ............................. CCAAAAAATTAATCCAAATTCTCAACGCGGCC 36963 29 100.0 32 ............................. GGCCGCGATAGGAGATAATCAAGATGAAACAG 37024 29 100.0 31 ............................. CGCCGAGCCACCAGCGGGGTTTATGTTACGA 37084 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 10 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGATTGAGGAAGTCTTGTCTGCGGGGGGCATTACGCCGCCGCTGCCGCCGGACGATGCACAGCCGCCTGCAATCCCAGAACCGAAACCGTTTGGTGACAGCGGCCACCGGGGGCAGGGTTAAATGAGCATGTTGGTGGTGGTGACGGAAAATGTCCCGCCGCGTTTACGCGGCAGGCTGGCGGTGTGGCTACTGGAAGTCCGCGCAGGCGTGTATGTCGGTGATACGTCACAACGGGTGAGGGAAATGATCTGGCAGCAGATTATCGAACTGGCAGAACAGGGCAACGTGGTGATGGCGTGGGCGACGAATACGGAATCCGGTTTTGAGTTCCAAACCTGGGGAGAAAACCGCCGAATGCCGGTAGATCTGGATGGCCTACGGTTAGTCTCTTTCTCACCTATTGAAAATCAATAAGTTAGCGATCTTTAACAACATGGAAAAATCGGTGGGATTTTTTATGCCGAAAAAAGTATTATAAAACAATGCTCTATTTTTAGA # Right flank : TT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1-395 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGZZ010000139.1 Pectobacterium brasiliense strain NAK:470 KJBJNKIL_139, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1 29 100.0 33 ............................. CTGTAAAGAATTGTATAGCTTAATATCGCTCAC 63 29 100.0 32 ............................. CTATGAAGAAATGAAATTTTTCTGGGTGTGGG 124 29 100.0 32 ............................. CACGTGGCGCATGGCATGAGCATTCCACCGAT 185 29 100.0 32 ............................. GATGACGTTATCGAATCCCGCGCCGTTCCCCC 246 29 100.0 32 ............................. AATGCTCGCACCAAGAACACCTACGACCGCGC 307 29 100.0 31 ............................. CGTCGAGCACGTAGGGTTTTGATGTTAAAGA 367 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 7 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : TTGGTTATAAATCACTCCTGACTGCCATCGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 202-51 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGZZ010000141.1 Pectobacterium brasiliense strain NAK:470 KJBJNKIL_141, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 201 29 100.0 32 ............................. TCGCCAAGTCTAAAGAAATGAGCATCGTTCAG 140 29 96.6 32 ............................T CAAAAAAAATCCCGCCGATTTCTGGGCGGGAC 79 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGCCAGCGGGGATAAACCGATCGCGCCACGTCCTGAAGTATTTCTATTGC # Right flank : GGCCCAGAACAATAAAATGTGGCCACTTTTAGAGTGTTCCCCGCGCCAGCG # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [38.3-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 157230-153358 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGZZ010000019.1 Pectobacterium brasiliense strain NAK:470 KJBJNKIL_19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 157229 28 100.0 32 ............................ ACGCCGGGCACCCGACCATATACCGGGCCGTT 157169 28 100.0 32 ............................ TACAAATATGCTGCATTTCAGGCGTTCTGCAT 157109 28 100.0 32 ............................ TCGCATTCCGATGAATTCAGCTATGCAGCGCT 157049 28 100.0 32 ............................ CTACCTGTCAGCCCATTCTCTTTGAGAATTTG 156989 28 100.0 32 ............................ ATTCAAAAAAATCAAGATCACCATTGCATGCC 156929 28 100.0 32 ............................ AAGAACAACCGCACGCTGAAAAAGGAATCGTA 156869 28 100.0 32 ............................ TACTCAGGAAATACCAAAAACTGGGCATGATC 156809 28 100.0 32 ............................ ATACGCATATCAAGTGGTTGACCACACTGAGT 156749 28 100.0 32 ............................ TCTTCGATAAATCATGTCCTAACCCCCATAAA 156689 28 100.0 32 ............................ GATATGACAGCATAGAGCGGAGAAAGAAGGTT 156629 28 100.0 32 ............................ TCTCCGATTTCTGACCCTTTGCCAGCAATGCC 156569 28 100.0 32 ............................ TATTGGGCATTGGAGATAGAGATGAGCGATTT 156509 28 100.0 32 ............................ TGACCGATTTAAATATTCAACACGCATTAGCC 156449 28 100.0 32 ............................ AGAGAGCGAGAGGCATTGTTAGCGAAAGAGAG 156389 28 100.0 32 ............................ ACTGAGCGATGCGACAAGAAGAAAGGCGATCA 156329 28 100.0 32 ............................ AGAATGGGTAAAGGACGCGATGAAACACACGT 156269 28 100.0 32 ............................ TGCGCGCAAATCGTGAGATTTGCAGATGAAGC 156209 28 100.0 32 ............................ TCTTGAATTGCATACCCAAGCGGACTACATTC 156149 28 100.0 32 ............................ AGTAGCCGAACTGAAATTAACCAAAGAACAAC 156089 28 100.0 32 ............................ CATTCAAGCCCTAGCCTAACCGCTGGGGCTTT 156029 28 100.0 32 ............................ AGAGTCGCGCAGGTCTGCGTTAACAGGCCGCT 155969 28 100.0 32 ............................ TTCTACCTGTGTGAGATAGAAATGCATGTCGC 155909 28 100.0 33 ............................ AATGGTGCCGATTCCCACTGAATTGCTGATTGA 155848 28 100.0 32 ............................ GAGTTAATCGCGGCGTTTAGGGTTTTTAGCTC 155788 28 100.0 32 ............................ CGCGCGCCGTTGCATTCGGTTTCGAGGCCCAT 155728 28 100.0 32 ............................ TTAAAGCGCTGCGGTTTTACTATTCGTGACTC 155668 28 100.0 32 ............................ AAAGGGGTCACGCGACCCCGCGGCTTGGTCGG 155608 28 100.0 34 ............................ TGTGGATGTAGAGTGTCACTTCGACTTCTGTGAT 155546 28 100.0 32 ............................ GATACCACAGGCGCAACGGCACTGATTGCAGA 155486 28 100.0 32 ............................ CAAATCGGCAGCAGCGGCAACGGCGCCCGAAT 155426 28 100.0 32 ............................ GTAGCCGCTGCTGCCGATTCGGGCGCCGTTGC 155366 28 100.0 32 ............................ GCTTTTTTGGTTCCAACGCGAGTGAGATGCAA 155306 28 100.0 32 ............................ GATGAATTTTTTGTTGTCGTCATAAAGATCTT 155246 28 100.0 32 ............................ CAGACCAGCGCGGTGACAGGCTGAAGGGGGAA 155186 28 100.0 32 ............................ TCGACAAGCTCAAGACAACAACAAACACCTTT 155126 28 100.0 32 ............................ CTATCAGAATCCCCGTTTTAGGGTTAGCTGAC 155066 28 100.0 32 ............................ TGAGCCATTACTTGATCAGTCAGAGAAAGATA 155006 28 100.0 32 ............................ GACAGGGCCAAATATTTCAGTAGCACGCATGA 154946 28 100.0 32 ............................ CATATGAGAAAAATCAGCAGAATAACAAACAC 154886 28 100.0 32 ............................ GGAAACCGTAGCTGACTGCCCAGCAACCCAAT 154826 28 100.0 32 ............................ GACTACACACAGAAAACCCAGCAACTCATTAC 154766 28 100.0 32 ............................ AAAACCTCATGCCAACGGGCATGGCATGGCCC 154706 28 100.0 32 ............................ ACAGCAACAATGTTACTGCCTGAGTGGGAAGC 154646 28 100.0 32 ............................ ACCCAATTCAGCAACTGGAGTTATCGACATTG 154586 28 100.0 32 ............................ ACGCGCTTATACGCGCCAGTCTGACCGCTTGT 154526 28 100.0 32 ............................ TAAAAATGTAACGGAAAGTCCAACGCCATATC 154466 28 96.4 32 A........................... GCGATAACGAGATAACCAATTAACATGATGAT 154406 28 100.0 32 ............................ GAGTTAATCGCGGCGTTTAGGGTTTTTAGCTC 154346 28 100.0 32 ............................ CGCGCGCCGTTGCATTCGGTTTCGAGGCCCAT 154286 28 100.0 32 ............................ TTAAAGCGCTGCGGTTTTACTATTCGTGACTC 154226 28 100.0 32 ............................ AAAGGGGTCACGCGACCCCGCGGCTTGGTCGG 154166 28 100.0 32 ............................ AGAGCAGCCGGATACACACGCCAGCAGCGATG 154106 28 100.0 32 ............................ ATTTCGTAAAAATGTCCGGCGTGTGGAGGTGT 154046 28 100.0 33 ............................ CCGCGGAAACATATTATGAAGGAAAACATATGA 153985 28 100.0 32 ............................ CTTGAGCGGGTCATTCGTCGTCACTGATGAGG 153925 28 100.0 32 ............................ CATAACCGTAAGAGACCGCTACGCGGCCAACC 153865 28 100.0 32 ............................ GTGGAACCTTGAACCTGTCACCGTTGCTGATA 153805 28 100.0 32 ............................ TAAACGCCGCGATTAACTCGGCCGAAACGTCA 153745 28 100.0 32 ............................ ATTGCTGAGCGATAACGGGAATGTTACGTTGT 153685 28 100.0 32 ............................ TGTAAATGCGCCTGCTGACGAGCTAGCGGGAA 153625 28 100.0 32 ............................ AGACGTGATCCGCCATCTCAGTGAATTTCGCA 153565 28 100.0 32 ............................ ATTTATTTGACGGATATACAACATATAGTGGC 153505 28 100.0 32 ............................ ATGTCATCGGATATGATGAGATTAATCATTCT 153445 28 100.0 32 ............................ TTCCCAGCCGACACTGTCGCAGTGCAGTCGGA 153385 28 78.6 0 .............C......T...TCCC | ========== ====== ====== ====== ============================ ================================== ================== 65 28 99.6 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : CGTGACAGAGGTGCCGGTCCCCAGCATGACAACGCTGGTATTGGCGATGGGGATATTCCAGTACAGAGACTGGCTTCCTTCCTCCGTGACATATTCGACACGGCCACCGTTAACGAGAATGCGGCAATGCTGGAGATAATAAACATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAGTCCGAAGGGCTAAAGGCGTTATCCATCATGTATTTTCTGCCGTAATCGATAATAGCTGTGACGCCAGCGGAATGAGTCGCAGGCTAACTATTTGATAAAGAAAAAATATAATTTTCAGAAAACTAACGAAAATCAGATTATCACAAATATTCAGAAAAAATGGTGGCTGCAAAAAATATGACCCAAACACAGACCCTTTTTATTTGGCCTATTTCACAGGCTTAACAATCAATGAGTTACAGATGAGCTGAAAAAAAGGGTTTTTGCAGGGAAAACGGCAATTGCTACTAATAAAACAAACCGTTAGAGTGATCGGGCTACA # Right flank : CGGTTTTAAGTGCCATTATCTGGCTATTATCGAGGTAGCGCTATCGGCAGATTTTGATGCGTTATCGCCTTTAAATAACGTATTTTTGATTCCCCTTTCTCGTAACCTTTTTAAGTAACGGGTTTCTTTGTTGGGAATGAAAAATTGCGTATTGAACGTTATTAACATTTAAAAATCATCATTTTTCCGTTAAAGTAACCTTACAGGGAAATAGTTCGTTGACTTAAGTAAAATTCAAAGGAATGAGATGCTGTGAAATACGATCCGGTTTTAAAAACACTTGTTGATGATGACTATCGGCTAGAAGATCATCTTGATTTTAAAAAGCAGCATGCTGATATTAACTATCAGAAATTACATGCTCAACTCAATGAAATAAATAACGATAACATTCATGCCATATTGACTGCGCAGGAAGCGACGTATTTTTTACAGACGTTATGCACCCCGAATCCCAATCAATCGTGGAAAACGGCCATATTTGGCTGTACTGATCCTGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 166679-168026 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGZZ010000019.1 Pectobacterium brasiliense strain NAK:470 KJBJNKIL_19, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 166679 28 100.0 32 ............................ AGCAGAAGTGGAAATGGTCTATTCACAGATTG 166739 28 100.0 32 ............................ AGTACGGGCGGTCGGCAAATGATTCTATATCC 166799 28 100.0 32 ............................ GTTCCGCAATATGGATGATGATATTGCCAGAG 166859 28 100.0 32 ............................ ATGGAGGACAACCGCATGAGCAACTTGCGGAA 166919 28 100.0 32 ............................ ACCAAAGCACTTACAAACTGTAAAACTGAATG 166979 28 100.0 32 ............................ TCTCTCGAAACTGCTGGAAAGAAATCCCTGAA 167039 28 100.0 32 ............................ ATGGAGGACAACCGCATGAGCAACTTGCGGAA 167099 28 100.0 32 ............................ GCATGTTTGAACAAACAGCAAAAACAATACTA 167159 28 100.0 32 ............................ GTGACATCGATTTCCACTGCGCAATACGCGCC 167219 28 100.0 32 ............................ GGGGACGTACACGGGCGGCATGCGCACGCCAA 167279 28 100.0 32 ............................ GTCTCGTGCTGGATTATAGAATCCATCAAAAA 167339 28 100.0 32 ............................ CGCTGGGGGGCGACGGATCAACTCAAGCAGAC 167399 28 100.0 32 ............................ CACTTCAGGGCAGGGTTATCGGCAGTCGGTGA 167459 28 100.0 32 ............................ CCGGCAAATGCCAGGGCTAAAGGTGGTAATCG 167519 28 100.0 32 ............................ GACGTCTGGAACGCCTGCCGCGCCGCAATGCT 167579 28 100.0 32 ............................ GGAACCAAAAATTGAGGACGCCGATGATTTTG 167639 28 100.0 32 ............................ CAACCCAACATTATATGCAAATGAAACTAACG 167699 28 100.0 32 ............................ GAAAGGGAAATCACTAGGTGAGGTGTTCTTCA 167759 28 100.0 32 ............................ ACAATCCGAACCAATGAAGCCGCAAGCTGCCC 167819 28 100.0 32 ............................ AGGATGGCTGAACAATTGGGTAACAGAGGACG 167879 28 100.0 32 ............................ TTATGCAATTTTTGCGTGCCTAATCCTCACAT 167939 28 100.0 32 ............................ GCGGGGGCGACAGAAAGCCACTCGTTCTGGGA 167999 28 78.6 0 ......................CGCTTT | ========== ====== ====== ====== ============================ ================================ ================== 23 28 99.1 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATCCTGGCGTTCTGTCATAAAGTCAGCGTCAGCGCGATCTTCTTGCAAAAAAGACTGCCAATTGGGTTTGACCGGACGCAACATGATGGTATCTCCCTCACGCACAATCTCCAGTTCGTTAACGCCTTCAAAGTCCATATCACGTGGCAAACGAATGGCACGGTTGTTACCGTTTTTAAATACCGAAACAATACGCATGATGCACCTCCTCCTTAATACAGAATTCAGCCAGCCACTTATCGTTTATTATTGCTGGCTACACCATAGGCTAAGTATAGATATTAATCACTCCACTGCATATTCATAGCATATGCAGATACCTAATATAGGCCTATCGACGATAAATAAAATCTTTGTCATACGTTCATGACCCCTTTTTTTACGCATCGTCGTAACTCATTGATTTTTAATTTTGATTACCTGTCCTGATAAAAAAGGGTTTTTCGGGAAAAATGGTTTATTTCCTTTTAAAATGAGTCCACTACCGTAAAATACGAACA # Right flank : TTTATCGGGATACGTCACTGGCGCGACGCATTTCGTGGCGTTATTCCCCATTGAGCGTGACAACCAGCGAGCGGCTGCCGCCGTGGTTGCGGTGCTCGCACAGGTAGATACCCTGCCAGGTGCCGATGTTCAGGCGTCCGTTGGTGATGGGTATCGTTAGACTGTTGCCCAGCAGGCTACCTTTTAGGTGCGCGGGCATGTCGTCGCTACCTTCATATGTATGGCGGTAATACGGCTCATCCTCCGGCACCAAGCGATTAAAAAAGCTCTCGAAATCCTGCCGCACCGTGGGGTCGGCATTCTCGTTAATCGTTAGCGCCGCCGAGGTGTGCTTGATGAACACCTGCATCAGCCCGACGTTTATCTGCCGCAGTGCAGTAACCTGCGCCAGTATTTCGTCAGTCACCAGATGAAAGCCTCTGGCTTTCGGCTTCAGGCGGATTTCATATTGCATCCACATCGTCGTATCCTGCTATCAGGCTTCGCGTGCCAGAATCGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //