Array 1 243402-243041 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV814829.1 Neisseria sp. HMSC068C12 Scaffold277, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 243401 30 90.9 32 ---.............................. ATCACATATTCGCTGTGTCGGGCGAACTCTTC 243339 33 93.9 32 GT............................... AGGCGCGATGGATTCGCCCATTTTGGCTAAAA 243274 33 93.9 32 AG............................... AGGTCGCTGTCGTCGTAGACGGTGTCTTGGTC 243209 33 97.0 37 .T............................... GCAGTGTTTTGGCCGTGTCAGCAATCACTATCGCGGC 243139 33 100.0 33 ................................. CAGCAAAACCCTCTACTCGCCGCCTTTACCGGC 243073 33 93.9 0 C............T................... | ========== ====== ====== ====== ================================= ===================================== ================== 6 33 94.9 33 TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : | # Right flank : TCTGCCACCGTATCTCATGTCTAAGTAAGGAAGAGGGGCTGTATGTTCAAATATTGTCCAAGCAGACCGCTCTTCTTTTGATCCTTCGCTTTCCGAAGCTTTAGTGAAAGCTGTGAAGGATATTAGAAGCAAGTCATAAAGGGTAATCAATAACAATGCCGTCTGAAAAAGTTTCAGACAGCATTTTTTCTATTTGCATATTAAATTTAATATCATATTATCATTGCATAATATCAGTTTAAATTTTTTAGAATTTCAATATGAAAACCCTAATTTACTACGCCCATTCTGCCCAAGACAAACTCGGTAATCTCTTGCCTTACGAACATTGGCAAACCTTACAAAGCCATTTGGTCAATGTTGGGGAAATGGCGGTGGAGTTTGCTCGGGTATTCGGTGCCTGCCATACTGGACAGCTTCATGACTAAGGGAAATATTCGGAAGCCTTTAACCGCCAATTACATGGCAGCCCTTTAGTCGATCAAGCTATCGCCGGAGCC # Questionable array : NO Score: 5.42 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.00,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: F [56.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.87 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 400885-401048 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV814812.1 Neisseria sp. HMSC068C12 Scaffold136, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 400885 32 100.0 34 ................................ AATCAGCCAAGGCTTGCTCAACGTTTGGGATTAA 400951 32 100.0 34 ................................ GACCCACGATTGGGATATGGTATCAATAACCAAT 401017 32 90.6 0 .............................NNN | ========== ====== ====== ====== ================================ ================================== ================== 3 32 96.9 34 CAGCCGCCTTCGGGCGGCTGTGTGTTGAAACC # Left flank : GTATATGGGAATACAAAATGCTAATGCTGATTACTTACGATATTTCGTTGGAAGACGCGGACGGACAGGCAAGGCTACGGCGCGTGGCGAAATTGTGTTTGGACTACGGCGTGCGCGTGCAGTATTCGGTGTTCGAATGCGATATCGCGCCCGATCAGTGGGTTGTTTTAAAGGACAAACTTTTGAAAACCTACAACCCTGAAACTGACAGCCTGCGCTTTTACCATCTGGGCAGCAAATGGCGGCGGAAAGTAGAACATCACGGCGCAAAACCGGCGGTGGATGTGTTTAAGGATACGTTGATTGTGTAAATCGCCAACCTGCGGTTCTCATGAAAATGCGGCAGGGTTGGCGAATTGGGATTGTTCTTTAATAATCAGGATATTGCGAATGCGGGCGTAACGGAAAAGGCTGTGTTATACTCGCGTTCACGCTTTTCTTAGGAGCTTAGCGAAATCGGGGCTGCGAAACCTGATGGAACAAGGCTTTTAAGAGAGGCT # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAACAACTCAATTTGCATACGACCGTATTTTTCAGACAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCTTCTTGTCACGCTCCAAGCAATCGTCGCCGAATCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACACGATACGCGCCCTCGTCATGGCGCAGGTAGGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAAAGTCTGATAAATGGCGGCGCGTTGTATTTGAACAGCCGCCTTCGGGCGGCTGTGTGTTGAAACGAGTATCACCTAGTTCACCCCATACAGTTACTGTAACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTATGATTTACGCCGCCCTCCGCGTCGAAGGCGTGCAGCAGCCGC # Questionable array : NO Score: 5.52 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAGCCGCCTTCGGGCGGCTGTGTGTTGAAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CAGCCGCCTTCGGGCGGCTGTGTGTTGAAACC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.40,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 401868-402031 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV814812.1 Neisseria sp. HMSC068C12 Scaffold136, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 401868 32 100.0 34 ................................ CTTACATATCTTAATCAAATAAGCCTTGACTTAT 401934 32 100.0 34 ................................ GTGAACTGTTCCACGCCCGACCCGATATTGAGAT 402000 32 96.9 0 ...............................N | ========== ====== ====== ====== ================================ ================================== ================== 3 32 99.0 34 CAGCCGCCTTCGGGCGGCTGTGTGTTGAAACC # Left flank : AACAAAGTCTGATAAATGGCGGCGCGTTGTATTTGAACAGCCGCCTTCGGGCGGCTGTGTGTTGAAACGAGTATCACCTAGTTCACCCCATACAGTTACTGTAACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTATGATTTACGCCGCCCTCCGCGTCGAAGGCGTGCAGCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAAATTGCTTGAGATGCTCAAGGCATTCTGCTACGCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTACGCGTCCGTTGCACACAATATAGACTGGGCAACAGCCGCCTTCGGGCGGCTGTGTGTTGAAACATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTATGGCCTATGAGCTTATACCTGAGCTGCAAGA # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCGCCTTCGGGCGGCTGTGTGTTGAAACTACGCCCCCGATGGTATCTACTGCCAGTCCAAAGTCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACGCTTAACGATTTATTGGCCGCGCAGGCTGCCGATCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAGCACCCACCCATACTGGCACACCAGCAACTACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACATTGAAAATTAGCGTCTGATTAGAATTATTTTTAACAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAACACGCCAAACCAAACGCCTGCGGAATAAGTGCGCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 5.62 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAGCCGCCTTCGGGCGGCTGTGTGTTGAAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CAGCCGCCTTCGGGCGGCTGTGTGTTGAAACC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.40,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 403312-403869 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV814812.1 Neisseria sp. HMSC068C12 Scaffold136, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 403312 33 93.9 33 NA............................... CGGCAAGCAGTGGCTGACCGCTGAAGACGATAA 403378 33 100.0 32 ................................. ACTAAACCGGACTGCTGAGCCATAAAATGCGG 403443 33 93.9 32 CT............................... GACTGCTACACATCGTCCCATCGAGACGGTGG 403508 33 97.0 31 C................................ CGCGTTTGGGGCAACCGCACCTGCACCAACG 403572 33 97.0 35 .C............................... CGCGCAAACTCAAGAAATCACACAAAAAATACAAG 403640 33 100.0 33 ................................. GGCAAACGCCGACTGCGCAGAACCGGCATCAAT 403706 33 93.9 32 GT............................... TCAACCTTTTGGACGAAGACGGCCTAATGTTT 403771 33 93.9 33 TC............................... ACGGATTAAAAGCAAGCAAGCATGGATTGTTAA 403837 33 93.9 0 TT............................... | ========== ====== ====== ====== ================================= =================================== ================== 9 33 95.9 33 AGCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : AACATTTGAGATATACAAACCGGCGCGTCGGTGTACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAATGAGGGACGCGATAAGTCGGAGCATATTAAACTCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTCAATATCAAAGCCGTCAGCGCGGAAGATATGATGCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAAGAGCTGGCCGAAAAAGTCGAGAAATTAGAAAACAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : CGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACGCCTATGTATTGATAGAGGCCGCCTTTACAATGCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACATCGAAAGAGTAATTAATATTGACGGAATGGTTAACAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCAAAACACGCTGGAATCTCGCAAGAACAGTATTCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACATCGAAAGAGTAATTAATATTGACGGAATGGTTAACAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCAAAACACGCTGGAATCTCGCAAGAACAGTATTCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTGCCAAAGCTCACGCGCCTGCCGGTGGCGGTGGTGGCAGCCG # Questionable array : NO Score: 5.47 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.40,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [1.7-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 404034-404523 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV814812.1 Neisseria sp. HMSC068C12 Scaffold136, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 404034 33 100.0 33 ................................. ATCGAAAGAGTAATTAATATTGACGGAATGGTT 404100 33 93.9 31 AA............................... CAAAACACGCTGGAATCTCGCAAGAACAGTA 404164 33 97.0 33 .T............................... ATCGAAAGAGTAATTAATATTGACGGAATGGTT 404230 33 93.9 31 AA............................... CAAAACACGCTGGAATCTCGCAAGAACAGTA 404294 33 97.0 34 .T............................... TGCCAAAGCTCACGCGCCTGCCGGTGGCGGTGGT 404361 33 97.0 32 G................................ ACGCAATTACGCGCCCTTGCCGATAACTACGA 404426 33 100.0 32 ................................. TATCTTGGAATTTGACGGCCTGTTGACCCAAA 404491 33 97.0 0 .C............................... | ========== ====== ====== ====== ================================= ================================== ================== 8 33 97.0 32 TGCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : TTGAAACCGCGTTTGGGGCAACCGCACCTGCACCAACGACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCGCGCAAACTCAAGAAATCACACAAAAAATACAAGAGCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACGGCAAACGCCGACTGCGCAGAACCGGCATCAATGTCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTCAACCTTTTGGACGAAGACGGCCTAATGTTTTCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACACGGATTAAAAGCAAGCAAGCATGGATTGTTAATTCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACGCCTATGTATTGATAGAGGCCGCCTTTACAA # Right flank : TT # Questionable array : NO Score: 5.58 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.47, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.40,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [46.7-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //