Array 1 333674-333506 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP045596.1 Streptococcus thermophilus strain TK-P3A chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 333673 35 91.7 30 -.....AC............................ AAAAAAGCCTTGAAGCTGGTAGCAAGAGAA CT [333665] 333606 36 100.0 29 .................................... TCGTGGTCGCTGGTCGCTGTATTGACGAT 333541 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 97.2 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : TGTGGATGAACTCCACTCACGTGGCTTCAAGGTAGGTTTAGTTTCTGGTGGTTTCCATGAGACAGTTGATAGACTGGCAAAAGAGGCAGGTATTGATTATGTGAAGGCCAATCACCTTGAGGTGATCGATGGTTTCTTAACTGGAAAGGTTTATGGTGAGATTGTTACCAAAGATGTCAAGGTAGCTAAGCTTAAAGATTGGGCAGCGGAAAATGGACTTAAACTCTCTCAAACCATTGCTATGGGTGATGGAGCCAATGATTTGCCTATGATTAAGACAGCCGGCATAGGCATCGCCTTTTGTGCCAAACCAATTGTCCGTGCACAAGCTCCTTATCAGATCACAGAACCAGATTTGTATAAGGTCATTGAGATCTTGGATGAGGTGGGAAAATAGTAGAGATAAAAGAGTCCTTTGGATGATTCCAAGGGACTCTTTGTGTATAAAAAAAACACCGAATCGGTGCCACCTTTTCAAGTTGAATACGGACTAAGCCTTA # Right flank : GAAAGAACACAAGGATATCTGAACAGCTCCCTGTCAAGTGGACAATGAAATAATAAAATATTAGGCGACGGCCTTGTTCCTCATTTCAAGAGGGGCAAGGCCGTTATTGCGCTCTTGAAAACGTTGATGATTGTAAAAATAGATGTAGGCATCAATATCTGAAACTAGCTCCTCAAAAGTCTTATACTTCTTCAAATCATAGCACTCCGTCTTAAAGTGCCCAAAGAAACTCTCAATTGGTGCATTGTCAATACACTTACCAACACGAGACATGGAGCGGGTCATCTGATACTGGGTAGTTAAACGGTAATAATCTTTCGAAGTATACTGCGAACCTCGGTCGCTGTGAATTAATGGTGTCGCATTAGGATTAGCTTTTTGTGCTTTACGAAGTGTTTCCAATACCAATTCGTTATCATTAAATTGACCAACTACATAGGCGACAATTGAGCCGTCGTAAAGATCCTTAATAGCACTCAAATAGGCTTTACAGCTGAAAC # Questionable array : NO Score: 5.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.16%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 1555548-1557827 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP045596.1 Streptococcus thermophilus strain TK-P3A chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1555548 36 100.0 30 .................................... ATTGCTTGCAATTTTGCCGAGCGGTAGCGC 1555614 36 100.0 30 .................................... GGATTGTCCTCTATGATGTTGATTTGACAC 1555680 36 100.0 30 .................................... ACTATTTGGCACCCGTTGGATTCGATTGGA 1555746 36 100.0 30 .................................... TTATGTACATTTCAAAAGGTGTTATCCATA 1555812 36 100.0 30 .................................... CATACAATTACAACAAACAAATCAATAACA 1555878 36 100.0 30 .................................... AACTATTCGGGATACCTTGAAGTAGGAACG 1555944 36 100.0 30 .................................... CTTAAGCCCACAGGATATCATGGGTACTTA 1556010 36 100.0 30 .................................... CTACCCCGCCGATACTTCTTACATTGTCAA 1556076 36 100.0 30 .................................... TGAAAATGAAACTTCTGTCTACTTAGAGCA 1556142 36 100.0 30 .................................... AATAACATTATTTTCTATCGTATTTTCGCT 1556208 36 100.0 30 .................................... AGATCTCTCTTTGATTACATTATCAAACCT 1556274 36 100.0 30 .................................... GTGGTATTATTGCAGGTTATATGAGTAGCA 1556340 36 100.0 29 .................................... CACTAAGTTGGAGGTCGTCGACCATGAAA 1556405 36 100.0 30 .................................... AGAGAGGATCAAAAGAAGTTTATGGATGCC 1556471 36 100.0 30 .................................... AATACGCTAAAGCAAGAAGTCATATCTTAT 1556537 36 100.0 30 .................................... GTGTATACATTAACAACCTCCCACCTTGGG 1556603 36 100.0 30 .................................... GGGGCTATAATTCCCGTCTTTTTACCCGTT 1556669 36 100.0 31 .................................... CTGGCAGACAAGAAAGTTAAGCTCCTGGAAA 1556736 36 100.0 30 .................................... CATGCAGCTTAAACCTCCTAAATCAGCAGA 1556802 36 100.0 30 .................................... ATGAAGTTACTTCTACAAAATCAAGCGGGA 1556868 36 100.0 31 .................................... CAATACGCTAAAGCAAGAAGTCATATCTTAT 1556935 36 100.0 29 .................................... ATCAAACCACTAGACGATGACGATAAGGA 1557000 36 100.0 30 .................................... CTTTTGAAATGTACATAACTTCATTACCTG 1557066 36 100.0 30 .................................... CTTAAGAAAGAGAGTTTTAAAAATGGCATA 1557132 36 100.0 30 .................................... ATTCAAGTTGAAAAAGACTTCAACAGTCCA 1557198 36 100.0 30 .................................... TATGGGCACATGGCAGATAGCTTATCTATC 1557264 36 100.0 30 .................................... AACTGATAAACATGTTCTTGTCCTGCGCCT 1557330 36 100.0 30 .................................... AATTTTTGAGTTTTTTATAGGGTGTCATAA 1557396 36 100.0 30 .................................... GGAAACCAAGAAATGCAATAGAATGGAAGC 1557462 36 100.0 30 .................................... AAGAGTCTATCGAACACTTACGAGCTGATA 1557528 36 100.0 30 .................................... AATATAATCGACGAGTAAGAGCGAGAGACG 1557594 36 100.0 30 .................................... CGCGCACCGTTGACAAGTGTCAAGTTATCG 1557660 36 100.0 30 .................................... GATGATTTTGAGTTTAAGGTTTTTAAACAA 1557726 36 100.0 30 .................................... GGGCAATGATCGGTAAAGGTTTGGCTGATG 1557792 36 94.4 0 ..................................GT | ========== ====== ====== ====== ==================================== =============================== ================== 35 36 99.8 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : ATTGATGGCTTTATCTCAGAAGAATCTTATACTATTTTTTATAGGCAAATCTGTCATCTGGTCAAGAAGTATCCAAATCTAACCTTTATTTTGTTTCCTAGTGACCAAGGCTATTTAAAAATTGATGAAGAAAATAGTAGGTTCGTCAATATTTTATCTGACCAGGTGGAGCATTTGTATGATGTTGAGTTTATGTATGAAAGGGTAATGAAATATTATCCAAGTAATGATTTTCCGACGAGAGAAGGCTTTAGGATGTCTTTAGAAACTGTGACACCTTATTTATTGACAAAAATGCTGAGACAACCTAGTCTCTCACTTGTTGATTCAGTAATATTGAATATCCTAAATCAGTTGTTTCATTTTAGTTACCGTATAAGATATTCACAAACATCTGATGAAAAACTTTTACAGAAATTTTTAGAAAGTAAGGATTGACAAGAACAGTTATTGATTTTATAATCACTATGTGGGTATGAAAATCTCAAAAATCATTTGAG # Right flank : TTTGATTCAACATAAAAAGCCGGTTCAATTGAACTTGGCTTTTTAAAATACACGATAAACATAAGGATTGTCAGGCTGACTAACCTCTTTAACCTCAGTCAAATTAAGGATAGGGAGGCTCTGTTTAAGGTTTTGATAATAATTCACAGTGATGGTACCAGTGACTGTTACCCAGGTATTATCCTTAAAGGTTTGGTCGCTTCCTGTCGTTGCCAGTCCGTAAACACCTGAATCGGCGATACAGTGGATAATACCGAAACGGAAGATGAACTGATATCCCTCGGTCTGTGGGTCATTGTAAACAAAGCCGGTATAGGTGACCTTCTTACCCACGAAATCGTTTGGATAGAGATAGATGAGCTCCATGACTTCCATGTAATTTTCCGTGGTAATCTGGATGGTCTCACGTCCCTTGTACTTGGCTAGCTCCTTGGTCATCTCCTTCTCATAAGCTGAGGAGGTGAAGTAGGAGCTGGTGTCTGGCTTCAAATACTGGATAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //