Array 1 94939-94177 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRZW01000138.1 Escherichia coli strain A178 NODE_7_length_218731_cov_79.6243, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 94938 29 100.0 32 ............................. CGACAAAATTCTCAAAACTCGATCAGGAAAAT 94877 29 100.0 32 ............................. CCACCGTTTTCGCCCACCAGGGCGCACAACCC 94816 29 100.0 32 ............................. GAAAAAGAGAAGGTAGAGAAAGCGGAATCTGG 94755 29 100.0 32 ............................. CAGGTCTATCGGGCGATCAATAAAATCGGTCA 94694 29 100.0 32 ............................. GCGCACCGTTGCGTCGAAAAGGCGCTGGAGAT 94633 29 100.0 32 ............................. TACGCTTACACAACGGGCGAATATTTTAACGG 94572 29 100.0 32 ............................. GAACCCAATAGTGAAATACAGCATCATTTTTT 94511 29 100.0 32 ............................. ACCTGGAGGCGAAAAAGGCGCTTCGACGTAAA 94450 29 100.0 33 ............................. GAGGCCTATATCTCTAACCGCATCGGGCTGCGC 94388 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 94327 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 94266 29 100.0 32 ............................. CTGCGTAGCGACCTTTGCTCTCAATTTCGTTG 94205 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 13 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAACAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAATCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAACTCTTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCAAACCTGACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCAGGATTGGTCGTCGCGGCTATTCCCTGACTGCGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 112070-110455 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRZW01000138.1 Escherichia coli strain A178 NODE_7_length_218731_cov_79.6243, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 112069 29 100.0 32 ............................. GCATTGACGCTTTAAACGACGACGGACGCCAC 112008 29 100.0 32 ............................. AAAACAGCCTTTAGATTAGTACCTGACGACCG 111947 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 111886 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 111825 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 111764 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 111703 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 111642 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 111581 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 111520 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 111459 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 111398 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 111337 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 111276 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 111215 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 111154 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 111093 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 111032 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 110971 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 110910 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 110849 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 110788 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 110727 29 100.0 32 ............................. CCTAGCCCGATTATCGGCATGAGCGATGCGGA 110666 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 110605 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 110544 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 110483 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //