Array 1 4110919-4112289 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR778149.1 Escherichia coli isolate SC487 chromosome 1 Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4110919 29 100.0 32 ............................. GATACGCTTCATCGCCCGACGTGGGGAGCATA 4110980 29 100.0 32 ............................. ATATTGTCAGAAACTGGCTGGAGCATGGTGAC 4111041 29 100.0 32 ............................. GTGGCTGAACTTCCGATGCGATGAATGTTATT 4111102 29 100.0 32 ............................. GCGAATGCCCCATCTGTAAACGCCGGGGAAAA 4111163 29 100.0 32 ............................. CGCTTTTGCTCAGTAGTGAGTGTGATTTCATC 4111224 29 100.0 32 ............................. CAGGTACAGCCGTTTCGGTGTTTTGTTTTTGT 4111285 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA 4111346 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 4111407 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 4111468 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 4111529 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 4111590 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 4111651 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 4111712 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 4111773 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 4111834 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 4111895 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 4111956 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 4112017 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 4112078 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 4112139 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 4112200 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 4112261 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 4127791-4128916 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR778149.1 Escherichia coli isolate SC487 chromosome 1 Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4127791 29 100.0 32 ............................. GGTATTTTCAGCAGATTAACCACCGCGATCGC 4127852 29 100.0 32 ............................. ATTACATCCGGCAATATCATGCTGATGCCTCG 4127913 29 100.0 32 ............................. GGCGGGCCGTTGGCTAAACGCTGCGATCTGCC 4127974 29 100.0 32 ............................. GGACGCCCAGGAAAAGGACATTGCAGCGTCAT 4128035 29 100.0 32 ............................. AAGGTCGTAAACATTGAAGACGCGATCGCGCG 4128096 29 100.0 32 ............................. TAACAGGAATGTTTACGCTGGCTGAGGCTGAG 4128157 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 4128218 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 4128279 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 4128340 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 4128401 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 4128462 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 4128523 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 4128584 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 4128644 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 4128705 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 4128766 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 4128827 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 4128888 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 19 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAATACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //