Array 1 297931-296191 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADKOK010000004.1 Cronobacter malonaticus strain MOD1_GK962 cmalGK962_contig_33, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 297930 29 100.0 32 ............................. TTCGGGCCAATTCTAAAAGGCGTTCCCTTTGT 297869 29 100.0 32 ............................. CCTGCCGCGCAGCACCGACAGCGCCGGTACAC 297808 29 100.0 32 ............................. CATTACCGTATTGACGGCGACGCATTAATCGC 297747 29 100.0 32 ............................. GACTCGCCCACCCATTTGGCCACCGCAACCAG 297686 29 100.0 32 ............................. TTGGCAAGATGTCGCTGAGTGAATCCTCGGTC 297625 29 100.0 32 ............................. CCCGAGACCGAGGCGCGGCTAAAAACGCTCGT 297564 29 100.0 32 ............................. GCTTTCGACGGACTTCCAAGAACCGAGCGAAG 297503 29 100.0 32 ............................. TGGTGACGGTTGACGCCTACGGAATCGAGAGT 297442 29 100.0 32 ............................. CACGAGGACGAATACGTCTGCTACGTGTACGT 297381 29 96.6 32 ..A.......................... GCCGATATCTCTGATTGTTACTCGTCGCTGAA 297320 29 100.0 32 ............................. TCCGTCCTGTGTGTGGGCGTTGACACTGGCGG 297259 29 100.0 32 ............................. AATCTCCTTAAGCGCGGCCATGTACATCAGGT 297198 29 100.0 32 ............................. GGCGGGCCTTGAATTGTGGGAGAAAAAAATCA 297137 29 100.0 32 ............................. TCCAGGACATGAAAGCTGACGCGCAGAAAAAA 297076 29 100.0 32 ............................. CTGATAGCTACGGCGAGGGGGAAACGTGTTAC 297015 29 93.1 32 ..........T.T................ CACCGCATCGACACGCCGACTGCGCAAAAAGA 296954 29 93.1 32 ............T.....A.......... GACGAATTATGGAACGTAAGTTTCTCGACTGG 296893 29 96.6 32 ............T................ AGGATATCGCTGATGCAGCGGCATATGAAGAA 296832 29 96.6 32 .G........................... CGCCGTGGATAAGAGCAGAGAGCAGTTTTTAG 296771 29 100.0 32 ............................. GGTAACTATACCTACGGCGACTTAAGGCATGT 296710 29 100.0 33 ............................. CCACCCTTTCATCCATAACCACCCCATCAACGC 296648 29 100.0 33 ............................. CCACCCTTTCATCCATAACCACCCCATCAACGC 296586 29 100.0 32 ............................. CCGCTGACGAATACGCCGTTATTTATGTAACC C [296577] 296524 29 100.0 32 ............................. GGTCATTGCCGTTCGCGCAGGTGAGGCCGTCT 296463 29 100.0 32 ............................. TGTCCCCGTTATCCAGAGCGGACTGCAGTCCG 296402 29 96.6 32 ............T................ ACTACACCCGAATCTACCCGAAATGACGCCGA 296341 29 100.0 32 ............................. GGGAAATAACCCTTATTGTCTGTTCGCCCTCT 296280 29 89.7 32 ...........AT....C........... TACTCTACGTAGTGCGAGAACGGCTCGCCTGC 296219 29 89.7 0 ............T............G..A | ========== ====== ====== ====== ============================= ================================= ================== 29 29 98.3 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACCGTGCTCGCCGCCGGTGAAATCGAACCGCCGCAGCCCGCAACCGACATGCTGCCGCCCGCGATACCGCAAGCCGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGTATGCTGGTCGTCGTGACGGAAAGCGTCCCACCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTGGGCGACGTATCGCGCCGCGTGCGTGAGATGATCTGGCATCAGATAAATGAGTTAGCGGAGGAGGGCAACGTGGTGATGGCGTGGGCTACGAATAATGAATCCGGCTTCGATTTCCAGACGTACGGCGTTAATCGGCGGATTCCGGTAGATTTAGACGGCCTGCGCCTTGTCTCGTTTTTACCGCTTGAAAATCAGTAGGTTAAACGCTCTTTAACAATGCGAGATTGTAAACCAAACGTTGGTAGGATGTTGTTGGCCGAAAAAGTGTAATAAATACAGTTATATAGTTTTAGA # Right flank : TGGTTGAGTAGAATCGCCAGGCCAGGTGGGTGCGCTTTGCTTACCCACCCTACATATAAACTGGCGGGCCTGCCCTTAACCGACCCACAAAAACTTCCCGTGCGTGCTCTCGATTGCGCAATAAACCGGCATACGGCGCGCGTTGGGTTGCAATCGCCATGGGCAACAGACATAATGCGCCCTGCGCGTTTAACGACGCTCTCAATGGGGGCCCTGTTGGTTCTCCCGCAACGCTACTCTGTTTACCAGGTCAGGTCCGGAAGGAAGCAGCCAAGGCAGATGACGTGTGTGCCGGGATGTAGCTGGCAGGGCCCCCACCCATTTCTGCCTCTCCCCGCCGCGATAACCTGCTTCGACTGTGCTTCTTTTAAGCATCCGCTCCTGTGTTTTCCCGTTCTTCCCACAGCTATTTATTTCCGCGTTGCCAGCCGCTTTATTTTATTCTGTCGTTTAAATTTAATTATACTGTCATTTATTTGTCATCTTATTGTCATAATAGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 325587-324703 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADKOK010000004.1 Cronobacter malonaticus strain MOD1_GK962 cmalGK962_contig_33, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 325586 29 100.0 32 ............................. ATTACCAGGGGGGATATTGGGAGTATCTTCAG 325525 29 100.0 32 ............................. CCGATACCGGCGATTAATCGGGGGACGGTGTA 325464 29 100.0 32 ............................. CAGATATCATGCTGGCAGATTTCAGCGGGAAA 325403 29 100.0 32 ............................. TGTCGCTAACATAGTTTCTCCTGAGCGTGACA 325342 29 100.0 32 ............................. GCTGCGCAAATACGAGGCAATCGTATTAATTA 325281 29 100.0 32 ............................. CTCGAGGCGGATTTTGTGCCGCTACAGCTCAC 325220 29 100.0 32 ............................. GTAAAGGACCCGAGCGCCCGGAAATTGAGTTA 325159 29 100.0 32 ............................. ATGGCGCTCTCTACAATCTGGAGGCGATAAAC 325098 29 100.0 32 ............................. TGGATATCACCCGGCAATGGCCGGGGAACAGC 325037 29 100.0 32 ............................. CGCCCCTCTCGGGGCGCGCTCCTGTTAGTCTT 324976 29 100.0 32 ............................. CTTCGGCAACCGGATCGGCTTTGCCTCCATAT 324915 29 100.0 32 ............................. ATGGTCGCGCAAAGCGCCATGCGGCCTACACC 324854 29 100.0 32 ............................. CGGATTGCATCAGATAACCGACTCCATGAATC 324793 29 100.0 32 ............................. CGGATTGCATCAGATAACCGACTCCATGAATC 324732 29 93.1 0 ...........TT................ | G [324711] ========== ====== ====== ====== ============================= ================================ ================== 15 29 99.5 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACGAAAGCTTCAAATGGATGATGGCGAACAACATCGCGTTTATCGTCGCCAACATCAATATCAACTACCGGCGGCCCGCCGTGCTTGGCGATCTGCTGACTGTCACCAGCCATGTCAAACAGCTTAACGGTAAAAGCGGAGTGTTAAGCCAGGTCATTACGCTGGAGCCGGAAGGCGAGGTGGTCGCCGATGCGCTTATCACTTTTGTGTGTATCGATCTGAAAACACAAAAAGCCTTACCGATTGAAGGCGAACTGCGCGAAAAGCTGGAAAAAATCACAGGGTAAATTCTGCAAAAGTGGCGCTTGTGCCGACAATCATGGACTTATCACCGCTCAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACACCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTAAGAAAATGTTGGTAGGATGTGGGTGGCGAAAAAATCGCAATAAGTACAAGTGCTTAACGTTAGT # Right flank : CCCAGGTTCTTCACGCCTGTCAATCGCCTCCCCTTTTCCCGCCACATTCTTCAGCAACGTTTATACTTCAAAGCCCTTGTTAAATTTTGAACACTGCGCAACGAAGGAGAGGTTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTACGATGGCTTCAGTAAAGGGCTGCAGGCGCATCTCATCTGCCACTGCCTGCTGATTGAAACCGACCATCACGGGCTGGTGCTGGTGGATACCGGCTTTGGCTGTGACGATATGCGCCACCCTGGCCGCCGTTTACCGCTCTTTTTCCGGGCGCTGAACAATATCCAGTACCGGGAATCATTAACGGCGCTGCACCATATCAAGGCGCTCGGCTTTAAGCCGGAGGATGTACGGCACATTGTGCTGACGCATCTGGATTTCGATCACGCGGGCGGGCTGAGCGATTTCCCGCAGGCGCAGGTGCATCTGATGCAGCGGGAAATGACCGCCGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //