Array 1 77280-76712 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRNT01000003.1 Cronobacter dublinensis strain cro4191B1-1 contig3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 77279 28 100.0 32 ............................ GCACCCATCGGCAGCGCAACATCTGGCTGGGA 77219 28 100.0 33 ............................ CTCCGGGCTGGGGATTACTGCACGTCGTTAAAG 77158 28 100.0 32 ............................ ATCGACGCGCTGGCGCTTGATATTCCGCTTCA 77098 28 100.0 32 ............................ AAACAGGAGTGACCATGAATCTGTTTCAACGT 77038 28 100.0 32 ............................ ATTAACGCCAACGCAATTAAGGGAAACAGTAG 76978 28 100.0 32 ............................ TTCAGCGCTACCGCCGGATATTTTTTCGATAT 76918 28 100.0 32 ............................ TTTTTCGTATTAGGCCACAGGTAATCAATCAC 76858 28 92.9 32 .......C..A................. ACTTCGCTGGTAGCTCTCCGAGACTATCATGA 76798 28 92.9 32 ...........TA............... ACTGACGCCTCCGGGCTTCGCCCTCCGCGATC 76738 27 78.6 0 ...T.......TA........C-.C... | ========== ====== ====== ====== ============================ ================================= ================== 10 28 96.4 32 GTTCACTGCCGCGCAGGCAGCTTAGAAA # Left flank : GGCGCTGGCGGAATTAGAGGCCACGCGCTGGCGGGCTGGGTTACAGGATTACTGCCAGAGCAGTGCAATATTACCCGTGCCTCAGGTGCAGGGCTGGCGGACCGTCTCGCGCGTACAGGTGAAAAGTAATCCCGAACGCCTGATGCGTCGCTCGGTGCGCAAAGGCTGGCTGACGGAAGAAGCCGCGCGGCAACGGCTCTGCGATTTACACGAGCAACAGACCTCTCTGCCGTGGATTCAGGTTAAAAGTCTCTCCAGCGGCCAGTACTACAGAATCTTTATCCAGCACGGCGAGCTGCTGACCGCGCCCGTCAGCGGCGTGTTCAGCAGTTATGGATTAAGCCCCAACGCGACGATTCCCTGGTTCTGACCTTTTTTAAAAATGCCTCGCTAACCTGTTGATTTATATCATGCGCTGGCGAGGCGCTAAAAAAGGGTATACGGCATACAAAATGTATAACAGGCTTTTAAAAACAAAGGACTGATTTATTTCAGCGTTA # Right flank : TCGTATTACTGCTCCGCCAGACTTGACCTTCCTGCAAGGGGAGGGTTTAAGCTCAACGGGTGCACGTTGACGATAAGGACTGGAAGATGCAACGCCGAGATTTTATTAAGTACACCGCCGCGCTGGGCGCGTTAAGCGCGCTGCCGACATGGAGCCGGGCCGCGTTTGCCGCAGAGCAACCGGCGCTGCCCATTCCCGCGCTGCTGACGCCTGACGCCAGCAGCCGCATTCAGCTCACGGTGCAGGCGGGCAAAACCGCGTTCGCCGGGAAAAATGTCACCACCTGGGGCTATAACGGCTCGCTGCTTGGCCCGGCGATTAAGCTGCGCCAGGGCAAGCCGGTGAATGTCGAGATCCGCAATACGCTCGCCGAAGAGACGACGGTGCACTGGCACGGGCTGGAAGTGCCGGGCGCGGTGGACGGCGGCCCGCAGGGCGTCATCGCGCCGGGGCAGACCCGCAGCGTGAGCTTTACGCCGGAGCAGCGCGCCGCGACGTGC # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCGCAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCGCAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 184810-186546 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRNT01000002.1 Cronobacter dublinensis strain cro4191B1-1 contig2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 184810 29 100.0 32 ............................. AATTGCGTCAAACGCATTCATTCTCGTTATTG 184871 29 100.0 32 ............................. TTTGCAGACTCGTTAATATAGCTGTCGGTTTT 184932 29 100.0 32 ............................. CAATAACCAACTTAGCGAGTCCGGACGTCAGA 184993 29 100.0 32 ............................. ACGACAGTGTGCTGACGCTCTGGGACGGTTCA 185054 29 100.0 32 ............................. GACCCCGCAGCACCCACCCACCAGTCGTTCAA 185115 29 100.0 32 ............................. CCTACCTGCTTTTGCTGCGGCGCGAGCAAAAT 185176 29 100.0 32 ............................. GCCCACGCCTCTAAAGTGGCCGCCCTCGGCTG 185237 29 100.0 32 ............................. TCCAGCCCGGACAGGACACGCCAGCTATTCGG 185298 29 100.0 32 ............................. GCTTTCGGCGAGGTCGTTGAACTGCTGCCACT 185359 29 100.0 32 ............................. TTTTTGTTTATCGCCACTTCGTTGACGGCAAA 185420 29 100.0 32 ............................. CATTGTTTTTGCGTGGGTCGACGAGCAGTTGC 185481 29 100.0 32 ............................. CGTATCACTTCGTCTTCGTGACCGGCTTCATA 185542 29 100.0 32 ............................. AGCAACATCGACACAGCAAAACTGAAAGCGGC 185603 29 100.0 32 ............................. AGATCGAGACGTCGTATTCTCTCGATAGCTTG 185664 29 100.0 32 ............................. CCCAAAGGCTGTTCTCTGCCTGATAGCAGCGT 185725 29 100.0 32 ............................. CGTGAGTGAAATAAGCAAAGAGCAGATTATTT 185786 29 100.0 32 ............................. TTTGGGGTCGCGAAGAGCAGCAGGCATTTTTG 185847 29 100.0 32 ............................. GATTTACGAACGGCAACCCCCAGGGCGGTGTG 185908 29 100.0 32 ............................. TCATAAACAGACTGCATATAACGCGGGTAATC 185969 29 100.0 32 ............................. GCGCGCTGCGTGGCGTCAGCCAGTTCAAGCAT 186030 29 100.0 32 ............................. GTTTGTGGTCGTTGTAAAGGCACAGGCCTGCG 186091 29 100.0 32 ............................. CAGACCGAGAATATCTTGTTACCGAGATAGGC 186152 29 100.0 32 ............................. TTGCTTCAGCTCGCGTGCGCGCTTGATTGAAT 186213 29 100.0 32 ............................. TTCTTAAACAGATACGGCCAGACCAGCACGCG 186274 29 100.0 32 ............................. GTCGCGGAAACCTACCTCAACGGGCGCGGCAC 186335 29 100.0 32 ............................. GTGATAACCAGCTCTTTGTCTTCCAGTTGCCA 186396 29 96.6 32 .............T............... AAACTGGTTGGAGATAGCTTCATTGGCTACAA 186457 29 100.0 32 ............................. GCATTCCAAAAACCTTTCATTAACATATTCAT 186518 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 29 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ACGAAAGCTTTAAATGGATGATGGCGCACAACATCGCCTTTATTGTCGTCAATATCAACATCAATTATCGCCGTCCTGCGGTGCTTGGCGACGTGCTGACCATCACCAGCGAGATGAAACAGCTCAATGGTAAAAGCGGAGTGCTGAGCCAGGTGATTACGCTGGGGCCCGAAGACGAGGTAGTCGCCGACGCGCTCATCACGTTCGTGTGTGTCGATCTTAAAACCCAGAAAGCGCTGCCGATTGAAGGCGAACTGCGCGAAAAACTGGAAAATATCACAGGGTAAATTCTGCAATCACGCTGCCTGTGCGTGTCGTCATGGACTTCCACTTACCGAAAGCGAACAATCCGGTAGATGTTACCGGCCCGAAAGCACGCTGAAAAAAGGTTTTTAAAATCAACAGGGCAGCCGCTCTTTAACAAGATGGGTTGTGAAGTAAATGTTGGTAGAATGTTGGGGTCGATAAAAGTTTAAAGAAAACAACAGGTTGTTTTTAGA # Right flank : GAACCCGTTTGCCGTGGCGCAAAAAACTCATCTCTGTCATTCGTGCCAGCCCGAATATCCAGCTCAACCACCCGACAAAGCAAACATTCGCAACCCCTCCCAAACCCCATATTCTTCAGCGGCGTTTATACTTCAAAGCCAACATGAAATTTCGCAACACTGCGCAACGAAGGAGAGGCTATGCGGGTACACCATCTTAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTATGACGGCTTCAGCAAAGGGTTGCACGCGCATCTGATTTGCCATTGTCTGCTGATTGAAACCCAAAATCACGGACTCGTGCTGGTGGATACCGGCTTCGGCTGCGACGATATGCGCCATCCTGGCCGTCGTTTGCCCCTCTTTTTCCGGGCGCTGAATAACATTCAGTACCGCGAATCATTAACGGCGCTGCATCATATTAAGGCGCTCGGTTTTAAGCCGGAGGATGTACGGCACATTGTGCTGACGCATCTGGATTTCGATCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 212768-214931 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRNT01000002.1 Cronobacter dublinensis strain cro4191B1-1 contig2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 212768 29 100.0 32 ............................. CCAGAAATTCGGCTCGCTGCCCAGCAAATACC 212829 29 100.0 32 ............................. AGAACGGCGACGGGGGAGGCGTAACTGACCCG 212890 29 100.0 32 ............................. AACGCAGCAAAACTGAAAGCGGCGGCGCTGGC 212951 29 100.0 32 ............................. CTTTTTCAACGTTCGAACACTCGCCGTCGGCA 213012 29 100.0 32 ............................. TGGGCAAAAGCCGATGCAGGGCTCGTTCCCGT 213073 29 100.0 32 ............................. GCTCGCCGATACGAAATTTACGGCGCGCTTCA 213134 29 100.0 32 ............................. ACTGGAGCTACAGCAGCAAAGTTGTCTATGCC 213195 29 100.0 32 ............................. GCTTCGATTTCGCGTTCATCGAAACCGGCTTG 213256 29 100.0 32 ............................. TCGGCCGGCGTTGGCTTGTACATGTTTGCGGC 213317 29 100.0 32 ............................. CAACGCCGGGAGAGCGAGGCGCAGCGCCTGGC 213378 29 100.0 32 ............................. GGAGCGCCAGCGGGAGGGAATAAAGGTCGCTG 213439 29 100.0 32 ............................. GGAGCGCCAGCGGGAGGGAATAAAGGTCGCTG 213500 29 100.0 32 ............................. CGCTTGCCACAAATCATCGCCAGCGAAGACGG 213561 29 100.0 32 ............................. GCCATGACACTTTCGACAGCGAATACCAGAAC 213622 29 100.0 32 ............................. GGTCGGCGATAAAGTGGCCAAATCGCTGGCTG 213683 29 100.0 32 ............................. CAAGAACGCAACGTACTATTTTAATCTCGCGT 213744 29 100.0 32 ............................. TAAATCAAGTTGGCGTGCTCGCGACCCTCGCG 213805 29 100.0 32 ............................. ATCCCGCCGCCGAGTATTTTGCCCAACAGCCC 213866 29 100.0 32 ............................. ACGCCGCAGCAGCGCAAATTACAGGGCAAGGG 213927 29 100.0 32 ............................. GGTGGTTACGTTCAGCTCAAGGCCAGTAGCTG 213988 29 100.0 32 ............................. GGGTCAGAGCCTGTGGCGGATATTTCCAACGC 214049 29 100.0 32 ............................. CCATCCATATGGCTGGTGTGGAGCGCGTCAAA 214110 29 100.0 32 ............................. CGGTTTTTTATTACCAACAGAGGCACGTTCGG 214171 29 100.0 32 ............................. CAGGTTTATAACGGCTGTAAAAATGCGAAAAA 214232 29 100.0 32 ............................. ATGTGACTATTGGTGACATTGCTCAAATTTGT 214293 29 96.6 32 ............A................ TTCATTAATTCAACAAAACAGCAAATAGCCGA 214354 29 100.0 32 ............................. AGAGTCAATAGATAGTGAGAGAAAAAATTACC 214415 29 100.0 32 ............................. CGGGCGATTTGAGCAGCGTTAAACTGTGGTAC 214476 29 100.0 32 ............................. CCAGAGTTGGTCAGAACTGCCGATTACAGCCG 214537 29 100.0 32 ............................. CGAGTGCTGGCGTTCGGCATTGCATCAAGCAA 214598 29 100.0 32 ............................. CTCACTGACAGAGTATTTCCGCGTTCCGGGAC 214659 29 100.0 32 ............................. CGCTTAGCGACGTTGATTTTATCGACCTGTAT 214720 29 100.0 32 ............................. TTATGCCCAAAGCCTGGAATGCCTGGACGCCA 214781 29 96.6 32 .........A................... ACGAGTTTCGCGCGCGCATCCAGTTATCGCCG 214842 29 100.0 32 ............................. AACGCCGCCGGTGCGTTCGCGCGCTGCGCCAC 214903 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 36 29 99.8 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : GAGGTGCTGGCGGCGGGCGACATCGAACCACCGCAACCCGCGGCGGATATGCTGCCGCCCGCTATTCCACTGGCGGATTCGCTGGCCGAAGCGGGCTTCAGGAGCCGCTAATGAGCATGCTGATGGTTGTCACCGAAAACGTGCCGCCGAGACTGCGCGGGCGGCTCGCTATCTGGCTGCTTGAACTGCGCGCCGGGGTTTATGTCGGTGACGTCTCGAAGCGGGTGCGTGAAATGATCTGGCATCAGATAACCGAACTCGCGGAAGAGGGCAATGTCGTGATGGCCTGGGCTACGAATAATGAATCCGGCTTCGATTTCCAGACGTATGGCGTTAACCGACGTATTCCGGTGGATTTAGACGGCCTGCGCCTTGTCTCATTTTTACCCCTTCAGAATCAGTAGGTTAACTGCTCTTTAAGAATATGGAGATGTAATAAAAAGGTTGGTAGATTGTTGGGTGTGAAAAATTTCCTTATAGAACAGTTGCATAGTTTTAGA # Right flank : GGCCATGCATGCATTTATGATGGGCAAATTTGGATAAGCGATTTTCGACAAAAATCGCTCTACCCCGGAGAGAGTTATCGAAAAGCACAACCAGCTTTTAAACTATACAGGCACTACTGAGATGAATAAGAAAAACCTTTTACTGGCTATTCCAGCGTTATATTGTTTTTGCGTGTTTGCCGGGGATGACACTCCCGGGCAACAGCCGCAACAGGCCGCGCTCAAATTCAACCAGTGGTATATAAAACACTTCAACGATTCGGATGATAATCTGCTTAACAGTAAAGAAATCGAAATCTACGTGGCGAAAGAGACGCTGGAAACGTTACGACACGCGAGAAATAACGACGATGAATTTTATGATGCCGACTTTTTTATAAAAGCGCAGGACATCATGCCTGACTGGCCAACCCATACGGTTGTAACCGGCGCAGAATACGATCCCGTTTGTACTCAGGTGTACGTCTCATTCGGCCAGCATCAGACGCATGGCGTGGTTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //