Array 1 1128953-1127580 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP060288.1 Pseudomonas mendocina strain CPS5 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1128952 29 100.0 32 ............................. ACCTTGAGGATCAGGACTTCGGCGATGACGAG 1128891 29 100.0 32 ............................. GCATCGATTCCCATGCCCCGCAGTACGGCCGA 1128830 29 100.0 32 ............................. GCTGATGAGATTAACGCTGGCGGCTCTCATCG 1128769 29 100.0 32 ............................. GTGCCGAACTGGATCAACTGCTTGCCAGGCTC 1128708 29 100.0 32 ............................. CATGTTCAGGTCGGCGACGGCATGCGCATCAC 1128647 29 100.0 32 ............................. AGCGCGAGCAGCGGGAGCAACGCCAGGCACCA 1128586 29 100.0 32 ............................. TTATGAGTTGGGATGGTTTCACTAACGGTTGT 1128525 29 100.0 32 ............................. CTGCTTGGCTGCGTCAGCGACACGCCAGGCGT 1128464 29 100.0 32 ............................. GCATTGACAGGCGTGCCAGTGGAAATGATGCA 1128403 29 100.0 32 ............................. GTGAGGGCGGCCCATGCTCGTTCTTGATCGCG 1128342 29 100.0 32 ............................. CGCAACGTAACGAAAATAAGGACGTTGCCGAG 1128281 29 100.0 32 ............................. TCCTCGCGGCTGGTGGCGATCAGGCCATGCAC 1128220 29 100.0 32 ............................. ATTCACAGACCTTACGACCCTCACCATCAGTT 1128159 29 100.0 32 ............................. CTGAGCCGCGCCGTGCTGCGCCGTGACGGCTT 1128098 29 100.0 32 ............................. CAGGTGTTTGTCGATATTTGGCACGTCTTGAC 1128037 29 100.0 32 ............................. CCCTTGGAGTACGACTTGCAGTTTTAGATCGC 1127976 29 100.0 32 ............................. AACATGAACATGTTCAACGACGCCAACAGCTA 1127915 29 100.0 32 ............................. GCCTGGCCGTTGATCGAGGGCACCGGCCGTAT 1127854 29 100.0 32 ............................. CAGAAGATCGTCTGGTCGCGCGATGTATGGAG 1127793 29 100.0 33 ............................. ATGAAGAAAGTCCTGCTGTGCGTTTTCGCAATC 1127731 29 96.6 33 .............T............... ATATGACAGGGAAAGCGCGATAAAGGCGGGATA 1127669 29 96.6 32 .......T..................... GCCGGCCGCTCGCGTCTGATGGGCCAGGTGGC 1127608 29 79.3 0 ............T...AT..A....G..A | ========== ====== ====== ====== ============================= ================================= ================== 23 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATGAACCG # Left flank : GCGAAGATCATTCCCACCATCGAAGAGGTGCTGTCCGCTGGCGGCATCTCGCCACCCGAAGCACCGCCGGAGTCAGTACCACCGGCTATCCCCAACCCGGAAAGCATCGGCGATGCCGGGCACAGGGCGCAGTAATGAGCTTTCTGGTCGTGGTCACCGAGAACGTCCCGCCGCGCCTGCGTGGGCGTATGGCCATCTGGCTGCTGGAGGTGCGTGCGGGTGTTTACATAGGCGACGTATCCAAACGCACCCGGGAAATGATCTGGGAGCAATTGAGCCAGGGGCATGAAGACGGCAACGTGGTCATGGCCTGGGCGAGTAACCACGAGTCGGGTTACGAGTTCCAGACGCTAGGCCCGAATCGCCGGCTGCCGGTGGACTTCGATGGCCTGAATCTGGTCGCTTTTCACCCCTTGGAAAACCCTGATCTTTAACAAAGAAAAGTTGGTAGATTTTTAGCGGCCAATTTTTCCCTTTGGGGACAATTGGTTACGCTAAGT # Right flank : AGCGCCACTCTGTGCGCTGTTTTTTAGCCGAGCAGGCGAGTAATCTTGCCGCCGATGGTTCTGCGTGCACGCATGTGACGCGGATGAAAAGGGAACAGGGTGCGGCGAATCTCGCCAATGCCCTGGCTGCCCCCGCAACTGTAAGCGGCGAGCGATGCCCGGATGCCACTGACTTTGGTCGGGAAGGCGGGCGAAGTGCCAAGCCGTGAGCCAGGAGACCTGCCATCGGCAACGGGCGTTTCGCCCACCCTTCATCCGAATCGCCGCGCGGTGGGCGCGGCAAAGGAACTCGCATGCATATCGAACCCGGTGTCGTCGAAGGCGCCAAGATCCTGCTCAGCTACGCAACAGCCGTTACCGCGTTTGGCCTGACCGCCAAACTCGCCCTGGACAGCGTCCGCAACAATGGTGGTATCGCCGCCCTGGCACTGCGCAGCCTGCTGACCACCGTCCTGGTGTTCTGCTTCTTCGAACTATTCCCGCATCACCCGGTAGGCGTT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1138838-1138320 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP060288.1 Pseudomonas mendocina strain CPS5 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1138837 29 100.0 32 ............................. GCCGTTGAGCGCCTCCTGATAGCGCTGCTCGA 1138776 29 100.0 32 ............................. TTCCAGGTGCGCGCAACATGATTTGGCGAGGG 1138715 29 100.0 33 ............................. CGGACTCCTGTTTGGTACCGTTTTGTGCTGAGC 1138653 29 100.0 32 ............................. TTGGGTGCCCTGGAAGCTGACGGTTTTCATAG 1138592 29 100.0 32 ............................. AGCGGCGGCGCCTACCTGAGCCGCGTGCTGAT 1138531 29 100.0 32 ............................. TGGTGATCGAGCACTACACCAACTACGACAGC 1138470 29 100.0 32 ............................. CGGGAGATGATGAGCCGGAGTTTTACGACGGA 1138409 29 100.0 32 ............................. GTGTGCGCCCGGTCGTAGCGCTCGACGCAATC 1138348 29 89.7 0 ..........................GAA | ========== ====== ====== ====== ============================= ================================= ================== 9 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATGAACCG # Left flank : GTCCGGGGTGGGTCGAGGCGGAGCTGGATATCCAGCAGCGCCACTTGCAGCAGAACGGTTTCATCCACGCCGGTGTGCAAACCACTCTGGCCGATCATGCAGCCGGTGCCGCTGCTGCGACGCTGGTGGCCGAAGGGCAGACGGTGCTGACGCTGGAGTTCAAGGTCAACCTGCTACGACCTGCGCGCAGCTCGCGGTTGTTCTGCCGCGCCGAGGTGCTCAAGGCCGGGCGCCAGGCGACAGTGGTCGAGGCCGAGGTGTTTGGCGAGGAACACGGCCAGAAACGCCTGTACAGCAAGGCTTCGGTAACCATGGCGGGGATGGTGCTGGCAGAGCGAGCCTGAGCCTGTTTCGAGGCGCTATGCTGTGCTCGAAGGCTTGCCTTGGGCCGCTTGCGGGCCTGATCGGTCTGCTCGAAATACCGCGATCTTTAACAAGGAAAAGTTGGTAGATTTTTAGCGGCTGATTTTTCCCTTTGGGAACAGTTGGTTAAGCTAAGT # Right flank : ATAAGCCTTGCCCCACCCTAACGTCCGAGGCGCTTCGCGGTATGAGCGCAGCAGTCTGATGCACAAGGTCGTGGTCAATCTTGTGCCCGTGCTGCTGGTATAGAAATCGGCATGATTGTCGGGTGCTGGCTATGCTGGCACTTTGTTTCAGGTCGAGTCTCACGATGCCAAGGAGTGCCAGATGAAAGGATTCGCCGATCTCAGCGAGCAGGCCCGTCGCCTTTGGGCCAAGAGTGGCGATGGCTTCGGCCATGGTGTGCTGGCGCATTTGCTGGATGTGGCGGCGGTGGCCGAACGGATGCTGGCCCATGAGCCTGCGAGCACACTGAATTGGGCGGCTCAGGCGCTGGGGCTGGAGCGCGAGCATGTCGCCCGCTGGATTGCCTGCCTGGTAGGCCTGCATGACTTCGGCAAGGCCATCCCCGGCTTTCAGGACAAGTGGCTCGAAGGGCGGCAGGCTGATGAGGCGCTTGGGCTGGTATTTCCCGACCGTGCCCTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //